Wall clock time and date at job start Mon Mar 30 2020 02:12:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 N 1.46895 * 109.46777 * 2 1 4 4 C 1.46903 * 110.99931 * 179.97438 * 3 2 1 5 5 H 1.09010 * 109.46791 * 325.00354 * 4 3 2 6 6 C 1.50694 * 109.47456 * 205.00105 * 4 3 2 7 7 H 1.08005 * 119.99656 * 265.23491 * 6 4 3 8 8 C 1.37876 * 120.00239 * 85.23124 * 6 4 3 9 9 N 1.31521 * 119.99733 * 353.98791 * 8 6 4 10 10 Si 1.86801 * 120.00080 * 173.70950 * 8 6 4 11 11 H 1.48496 * 109.46948 * 59.99992 * 10 8 6 12 12 H 1.48500 * 109.46950 * 179.97438 * 10 8 6 13 13 H 1.48494 * 109.47169 * 300.00067 * 10 8 6 14 14 C 1.53005 * 109.47243 * 84.99659 * 4 3 2 15 15 C 1.52997 * 117.50029 * 252.43761 * 14 4 3 16 16 C 1.52999 * 117.50151 * 183.77850 * 14 4 3 17 17 H 1.09005 * 109.46873 * 60.00446 * 1 2 3 18 18 H 1.09005 * 109.47223 * 179.97438 * 1 2 3 19 19 H 1.08996 * 109.47453 * 300.00436 * 1 2 3 20 20 H 1.09001 * 109.47059 * 239.99329 * 2 1 3 21 21 H 1.09003 * 109.46607 * 120.00025 * 2 1 3 22 22 H 1.00903 * 111.00088 * 303.94846 * 3 2 1 23 23 H 0.96999 * 120.00021 * 0.96529 * 9 8 6 24 24 H 1.08997 * 115.54629 * 38.10662 * 14 4 3 25 25 H 1.09003 * 117.49959 * 359.97438 * 15 14 4 26 26 H 1.09003 * 117.50079 * 145.01751 * 15 14 4 27 27 H 1.09000 * 117.49963 * 214.98154 * 16 14 4 28 28 H 1.09002 * 117.49312 * 359.97277 * 16 14 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0196 1.3850 0.0000 4 6 3.4881 1.4242 0.0006 5 1 3.8736 0.5924 0.5904 6 6 3.9557 2.7249 0.6011 7 1 4.1869 3.5631 -0.0396 8 6 4.0882 2.8449 1.9682 9 7 3.6953 1.8672 2.7552 10 14 4.8329 4.3929 2.7021 11 1 4.0111 5.5682 2.3168 12 1 4.8628 4.2741 4.1820 13 1 6.2162 4.5671 2.1909 14 6 4.0020 1.3119 -1.4362 15 6 4.6592 -0.0062 -1.8504 16 6 5.5166 1.2445 -1.6416 17 1 -0.3633 0.5138 -0.8901 18 1 -0.3634 -1.0277 -0.0005 19 1 -0.3634 0.5139 0.8899 20 1 1.8934 -0.5139 -0.8899 21 1 1.8933 -0.5139 0.8900 22 1 1.6442 1.9012 -0.7814 23 1 3.3253 1.0560 2.3733 24 1 3.4151 1.8397 -2.1879 25 1 4.7259 -0.7932 -1.0992 26 1 4.5050 -0.3454 -2.8748 27 1 5.9262 1.7277 -2.5287 28 1 6.1470 1.2807 -0.7531 RHF calculation, no. of doubly occupied orbitals= 32 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000023804149.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:12:26 Heat of formation + Delta-G solvation = 11.023472 kcal Electronic energy + Delta-G solvation = -9955.070722 eV Core-core repulsion = 8199.274578 eV Total energy + Delta-G solvation = -1755.796144 eV No. of doubly occupied orbitals = 32 Molecular weight (most abundant/longest-lived isotopes) = 169.116 amu Computer time = 0.10 seconds Orbital eigenvalues (eV) -37.44029 -34.46301 -32.51901 -29.37520 -25.55676 -22.66291 -21.67237 -21.17810 -19.73632 -16.67890 -15.12361 -14.83539 -13.69243 -13.49531 -13.39205 -12.92042 -12.14563 -11.48758 -11.32188 -10.97763 -10.89624 -10.67681 -10.53367 -10.07496 -9.74212 -9.65160 -9.52609 -8.38682 -8.27935 -7.02744 -6.22981 -3.94012 3.50288 3.52341 3.70745 4.54670 4.68208 5.20958 5.48821 5.69498 5.71797 5.78148 5.89345 5.95783 6.14613 6.21058 6.32445 6.37279 6.59872 6.69774 6.70322 6.81616 6.90792 7.17598 8.12593 8.48024 8.60222 8.73895 9.02242 9.82958 11.17572 Molecular weight = 169.12amu Principal moments of inertia in cm(-1) A = 0.037039 B = 0.018485 C = 0.013491 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 755.787287 B = 1514.382438 C = 2074.882745 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.049 3.951 3 N -0.672 5.672 4 C 0.225 3.775 5 H 0.039 0.961 6 C -0.577 4.577 7 H 0.046 0.954 8 C 0.029 3.971 9 N -0.903 5.903 10 Si 1.066 2.934 11 H -0.289 1.289 12 H -0.284 1.284 13 H -0.290 1.290 14 C -0.151 4.151 15 C -0.203 4.203 16 C -0.164 4.164 17 H 0.044 0.956 18 H 0.045 0.955 19 H 0.059 0.941 20 H 0.011 0.989 21 H 0.059 0.941 22 H 0.317 0.683 23 H 0.274 0.726 24 H 0.081 0.919 25 H 0.083 0.917 26 H 0.076 0.924 27 H 0.077 0.923 28 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.909 -2.261 -6.182 6.645 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.081 4.081 3 N -0.302 5.302 4 C 0.119 3.881 5 H 0.057 0.943 6 C -0.616 4.616 7 H 0.064 0.936 8 C -0.177 4.177 9 N -0.538 5.538 10 Si 0.895 3.105 11 H -0.216 1.216 12 H -0.210 1.210 13 H -0.216 1.216 14 C -0.171 4.171 15 C -0.240 4.240 16 C -0.202 4.202 17 H 0.063 0.937 18 H 0.064 0.936 19 H 0.078 0.922 20 H 0.029 0.971 21 H 0.078 0.922 22 H 0.134 0.866 23 H 0.085 0.915 24 H 0.100 0.900 25 H 0.102 0.898 26 H 0.095 0.905 27 H 0.096 0.904 28 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -0.573 -1.486 -4.041 4.344 hybrid contribution -0.266 -1.030 -2.552 2.765 sum -0.839 -2.516 -6.594 7.107 Atomic orbital electron populations 1.21757 0.96655 1.00156 1.01685 1.21907 0.94219 0.93023 0.98903 1.61563 1.11153 1.09605 1.47929 1.19068 0.83227 0.98326 0.87494 0.94269 1.21689 1.47704 0.98249 0.93957 0.93615 1.25730 0.94990 1.03091 0.93939 1.70715 1.37929 1.06908 1.38232 0.83595 0.75968 0.74839 0.76066 1.21581 1.20984 1.21642 1.23281 0.95225 0.97356 1.01254 1.22993 1.08044 0.92320 1.00655 1.22667 0.94987 1.00451 1.02098 0.93683 0.93581 0.92176 0.97129 0.92232 0.86615 0.91509 0.90038 0.89798 0.90531 0.90414 0.88601 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.42 10.17 37.16 0.38 -2.05 15 2 C 0.05 0.99 6.20 -3.82 -0.02 0.96 15 3 N -0.67 -15.59 6.23 -107.94 -0.67 -16.27 15 4 C 0.23 5.62 1.69 -68.86 -0.12 5.50 15 5 H 0.04 1.08 6.46 -51.92 -0.34 0.74 15 6 C -0.58 -16.14 8.38 -34.44 -0.29 -16.43 15 7 H 0.05 1.29 7.82 -52.48 -0.41 0.88 15 8 C 0.03 0.84 5.45 -17.82 -0.10 0.74 15 9 N -0.90 -27.57 13.62 55.43 0.75 -26.81 15 10 Si 1.07 25.52 29.91 -169.99 -5.08 20.44 15 11 H -0.29 -6.69 7.11 56.52 0.40 -6.29 15 12 H -0.28 -6.84 7.11 56.52 0.40 -6.44 15 13 H -0.29 -6.60 7.11 56.52 0.40 -6.20 15 14 C -0.15 -3.21 5.00 -90.62 -0.45 -3.67 15 15 C -0.20 -3.77 10.18 -26.70 -0.27 -4.05 15 16 C -0.16 -3.23 9.97 -26.70 -0.27 -3.50 15 17 H 0.04 0.70 8.14 -51.93 -0.42 0.27 15 18 H 0.05 0.66 8.14 -51.93 -0.42 0.24 15 19 H 0.06 1.06 8.14 -51.93 -0.42 0.64 15 20 H 0.01 0.20 8.01 -51.93 -0.42 -0.21 15 21 H 0.06 1.28 8.05 -51.93 -0.42 0.86 15 22 H 0.32 6.92 8.37 -39.29 -0.33 6.59 15 23 H 0.27 8.39 6.83 -40.82 -0.28 8.11 15 24 H 0.08 1.67 7.97 -51.93 -0.41 1.26 15 25 H 0.08 1.59 8.07 -51.93 -0.42 1.17 15 26 H 0.08 1.25 8.14 -51.93 -0.42 0.83 15 27 H 0.08 1.35 8.14 -51.93 -0.42 0.93 15 28 H 0.10 2.03 8.14 -51.93 -0.42 1.60 15 LS Contribution 238.57 15.07 3.60 3.60 Total: -1.00 -29.67 238.57 -6.90 -36.57 By element: Atomic # 1 Polarization: 9.31 SS G_CDS: -4.35 Total: 4.96 kcal Atomic # 6 Polarization: -21.34 SS G_CDS: -1.14 Total: -22.48 kcal Atomic # 7 Polarization: -43.16 SS G_CDS: 0.08 Total: -43.08 kcal Atomic # 14 Polarization: 25.52 SS G_CDS: -5.08 Total: 20.44 kcal Total LS contribution 3.60 Total: 3.60 kcal Total: -29.67 -6.90 -36.57 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000023804149.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.590 kcal (2) G-P(sol) polarization free energy of solvation -29.668 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.922 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.899 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.566 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.023 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.10 seconds