Wall clock time and date at job start Mon Mar 30 2020 02:12:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 N 1.46895 * 109.46777 * 2 1 4 4 C 1.46903 * 110.99931 * 179.97438 * 3 2 1 5 5 H 1.09010 * 109.46791 * 325.00354 * 4 3 2 6 6 C 1.50694 * 109.47456 * 205.00105 * 4 3 2 7 7 H 1.08005 * 119.99656 * 265.23491 * 6 4 3 8 8 C 1.37876 * 120.00239 * 85.23124 * 6 4 3 9 9 N 1.31521 * 119.99733 * 353.98791 * 8 6 4 10 10 Si 1.86801 * 120.00080 * 173.70950 * 8 6 4 11 11 H 1.48496 * 109.46948 * 59.99992 * 10 8 6 12 12 H 1.48500 * 109.46950 * 179.97438 * 10 8 6 13 13 H 1.48494 * 109.47169 * 300.00067 * 10 8 6 14 14 C 1.53005 * 109.47243 * 84.99659 * 4 3 2 15 15 C 1.52997 * 117.50029 * 252.43761 * 14 4 3 16 16 C 1.52999 * 117.50151 * 183.77850 * 14 4 3 17 17 H 1.09005 * 109.46873 * 60.00446 * 1 2 3 18 18 H 1.09005 * 109.47223 * 179.97438 * 1 2 3 19 19 H 1.08996 * 109.47453 * 300.00436 * 1 2 3 20 20 H 1.09001 * 109.47059 * 239.99329 * 2 1 3 21 21 H 1.09003 * 109.46607 * 120.00025 * 2 1 3 22 22 H 1.00903 * 111.00088 * 303.94846 * 3 2 1 23 23 H 0.96999 * 120.00021 * 0.96529 * 9 8 6 24 24 H 1.08997 * 115.54629 * 38.10662 * 14 4 3 25 25 H 1.09003 * 117.49959 * 359.97438 * 15 14 4 26 26 H 1.09003 * 117.50079 * 145.01751 * 15 14 4 27 27 H 1.09000 * 117.49963 * 214.98154 * 16 14 4 28 28 H 1.09002 * 117.49312 * 359.97277 * 16 14 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0196 1.3850 0.0000 4 6 3.4881 1.4242 0.0006 5 1 3.8736 0.5924 0.5904 6 6 3.9557 2.7249 0.6011 7 1 4.1869 3.5631 -0.0396 8 6 4.0882 2.8449 1.9682 9 7 3.6953 1.8672 2.7552 10 14 4.8329 4.3929 2.7021 11 1 4.0111 5.5682 2.3168 12 1 4.8628 4.2741 4.1820 13 1 6.2162 4.5671 2.1909 14 6 4.0020 1.3119 -1.4362 15 6 4.6592 -0.0062 -1.8504 16 6 5.5166 1.2445 -1.6416 17 1 -0.3633 0.5138 -0.8901 18 1 -0.3634 -1.0277 -0.0005 19 1 -0.3634 0.5139 0.8899 20 1 1.8934 -0.5139 -0.8899 21 1 1.8933 -0.5139 0.8900 22 1 1.6442 1.9012 -0.7814 23 1 3.3253 1.0560 2.3733 24 1 3.4151 1.8397 -2.1879 25 1 4.7259 -0.7932 -1.0992 26 1 4.5050 -0.3454 -2.8748 27 1 5.9262 1.7277 -2.5287 28 1 6.1470 1.2807 -0.7531 RHF calculation, no. of doubly occupied orbitals= 32 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000023804149.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:12:26 Heat of formation + Delta-G solvation = -8.477143 kcal Electronic energy + Delta-G solvation = -9955.916332 eV Core-core repulsion = 8199.274578 eV Total energy + Delta-G solvation = -1756.641754 eV No. of doubly occupied orbitals = 32 Molecular weight (most abundant/longest-lived isotopes) = 169.116 amu Computer time = 0.10 seconds Orbital eigenvalues (eV) -39.17880 -36.13077 -34.58260 -31.09281 -27.50701 -24.61526 -23.22996 -22.79979 -21.52942 -18.77250 -16.78340 -16.53876 -15.62031 -15.18233 -14.97592 -14.71777 -14.12481 -13.24823 -12.84525 -12.63082 -12.48625 -12.40411 -12.14494 -11.94351 -11.55442 -11.39004 -11.24908 -10.48995 -10.29274 -8.85115 -8.47348 -6.20330 1.56088 1.64300 1.82764 2.63008 3.01118 3.24479 3.81974 3.96122 4.16190 4.24860 4.30899 4.46001 4.57953 4.65075 4.71737 4.92465 5.01094 5.07679 5.14181 5.25459 5.30534 5.39919 6.05923 6.30282 6.61366 6.84491 6.92241 7.64711 8.90908 Molecular weight = 169.12amu Principal moments of inertia in cm(-1) A = 0.037039 B = 0.018485 C = 0.013491 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 755.787287 B = 1514.382438 C = 2074.882745 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C 0.053 3.947 3 N -0.690 5.690 4 C 0.229 3.771 5 H 0.004 0.996 6 C -0.584 4.584 7 H 0.040 0.960 8 C -0.024 4.024 9 N -0.933 5.933 10 Si 1.112 2.888 11 H -0.275 1.275 12 H -0.288 1.288 13 H -0.271 1.271 14 C -0.172 4.172 15 C -0.178 4.178 16 C -0.165 4.165 17 H 0.061 0.939 18 H 0.073 0.927 19 H 0.045 0.955 20 H 0.024 0.976 21 H 0.035 0.965 22 H 0.326 0.674 23 H 0.259 0.741 24 H 0.093 0.907 25 H 0.075 0.925 26 H 0.111 0.889 27 H 0.106 0.894 28 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.016 -2.049 -7.736 8.066 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.077 4.077 3 N -0.321 5.321 4 C 0.122 3.878 5 H 0.022 0.978 6 C -0.623 4.623 7 H 0.058 0.942 8 C -0.224 4.224 9 N -0.570 5.570 10 Si 0.935 3.065 11 H -0.201 1.201 12 H -0.214 1.214 13 H -0.197 1.197 14 C -0.192 4.192 15 C -0.215 4.215 16 C -0.202 4.202 17 H 0.080 0.920 18 H 0.092 0.908 19 H 0.064 0.936 20 H 0.042 0.958 21 H 0.053 0.947 22 H 0.143 0.857 23 H 0.069 0.931 24 H 0.111 0.889 25 H 0.093 0.907 26 H 0.129 0.871 27 H 0.124 0.876 28 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -0.685 -1.279 -5.622 5.807 hybrid contribution -0.249 -1.143 -2.129 2.429 sum -0.934 -2.422 -7.751 8.174 Atomic orbital electron populations 1.21677 0.93792 1.02041 1.01762 1.21884 0.96513 0.91013 0.98265 1.61246 1.10256 1.11865 1.48739 1.18813 0.84282 0.95520 0.89223 0.97786 1.22049 1.46993 0.99212 0.94070 0.94166 1.27108 0.95052 1.05148 0.95094 1.70843 1.40321 1.07337 1.38510 0.83006 0.76388 0.72005 0.75128 1.20061 1.21425 1.19664 1.23082 0.96459 1.00415 0.99237 1.23018 1.05354 0.90975 1.02127 1.22710 0.93621 1.01571 1.02343 0.92039 0.90812 0.93604 0.95833 0.94680 0.85673 0.93055 0.88859 0.90678 0.87108 0.87552 0.90937 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.27 10.17 71.98 0.73 -3.54 15 2 C 0.05 2.09 6.20 86.31 0.54 2.62 15 3 N -0.69 -31.99 6.23 -495.43 -3.09 -35.08 15 4 C 0.23 11.52 1.69 44.17 0.07 11.59 15 5 H 0.00 0.23 6.46 -2.38 -0.02 0.22 15 6 C -0.58 -32.98 8.38 25.60 0.21 -32.76 15 7 H 0.04 2.26 7.82 -2.91 -0.02 2.24 15 8 C -0.02 -1.41 5.45 84.65 0.46 -0.95 15 9 N -0.93 -58.49 13.62 21.45 0.29 -58.20 15 10 Si 1.11 51.49 29.91 68.60 2.05 53.54 15 11 H -0.28 -12.00 7.11 99.48 0.71 -11.30 15 12 H -0.29 -13.46 7.11 99.48 0.71 -12.76 15 13 H -0.27 -11.63 7.11 99.48 0.71 -10.93 15 14 C -0.17 -7.08 5.00 -10.79 -0.05 -7.14 15 15 C -0.18 -6.19 10.18 30.62 0.31 -5.88 15 16 C -0.16 -6.20 9.97 30.62 0.31 -5.90 15 17 H 0.06 1.74 8.14 -2.38 -0.02 1.72 15 18 H 0.07 1.93 8.14 -2.38 -0.02 1.91 15 19 H 0.04 1.57 8.14 -2.39 -0.02 1.55 15 20 H 0.02 0.87 8.01 -2.39 -0.02 0.85 15 21 H 0.03 1.53 8.05 -2.39 -0.02 1.51 15 22 H 0.33 13.93 8.37 -89.69 -0.75 13.18 15 23 H 0.26 16.55 6.83 -92.71 -0.63 15.92 15 24 H 0.09 3.62 7.97 -2.39 -0.02 3.60 15 25 H 0.07 2.75 8.07 -2.39 -0.02 2.73 15 26 H 0.11 3.14 8.14 -2.39 -0.02 3.12 15 27 H 0.11 3.37 8.14 -2.39 -0.02 3.35 15 28 H 0.07 3.05 8.14 -2.39 -0.02 3.04 15 Total: -1.00 -64.08 238.57 2.34 -61.74 By element: Atomic # 1 Polarization: 19.44 SS G_CDS: 0.51 Total: 19.94 kcal Atomic # 6 Polarization: -44.53 SS G_CDS: 2.58 Total: -41.94 kcal Atomic # 7 Polarization: -90.48 SS G_CDS: -2.80 Total: -93.28 kcal Atomic # 14 Polarization: 51.49 SS G_CDS: 2.05 Total: 53.54 kcal Total: -64.08 2.34 -61.74 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000023804149.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.262 kcal (2) G-P(sol) polarization free energy of solvation -64.083 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.821 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.344 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.739 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.477 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.11 seconds