Wall clock time and date at job start Mon Mar 30 2020 02:01:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.53003 * 109.47212 * 2 1 4 4 N 1.46496 * 109.46867 * 179.97438 * 3 2 1 5 5 C 1.36935 * 120.00168 * 270.00096 * 4 3 2 6 6 H 1.07997 * 119.99803 * 144.92408 * 5 4 3 7 7 C 1.38812 * 120.00029 * 324.92336 * 5 4 3 8 8 N 1.31620 * 119.99923 * 337.94615 * 7 5 4 9 9 Si 1.86798 * 120.00018 * 157.95106 * 7 5 4 10 10 H 1.48498 * 109.47670 * 59.99599 * 9 7 5 11 11 H 1.48500 * 109.47161 * 180.02562 * 9 7 5 12 12 H 1.48508 * 109.46770 * 299.99456 * 9 7 5 13 13 C 1.46503 * 119.99704 * 90.00219 * 4 3 2 14 14 C 1.53004 * 117.49740 * 183.23422 * 13 4 3 15 15 C 1.52995 * 117.49870 * 114.57730 * 13 4 3 16 16 H 1.09000 * 109.47049 * 59.99220 * 1 2 3 17 17 H 1.09000 * 109.47293 * 179.97438 * 1 2 3 18 18 H 1.09005 * 109.46810 * 300.00102 * 1 2 3 19 19 H 1.09001 * 109.46702 * 240.00376 * 2 1 3 20 20 H 1.08994 * 109.46972 * 120.00359 * 2 1 3 21 21 H 1.08995 * 109.46805 * 60.00115 * 3 2 1 22 22 H 1.09000 * 109.47048 * 300.00092 * 3 2 1 23 23 H 0.96995 * 119.99672 * 175.76702 * 8 7 5 24 24 H 1.08999 * 115.55313 * 328.90767 * 13 4 3 25 25 H 1.09001 * 117.49599 * 0.02562 * 14 13 4 26 26 H 1.09000 * 117.49619 * 145.02077 * 14 13 4 27 27 H 1.09002 * 117.50220 * 214.97803 * 15 13 4 28 28 H 1.09001 * 117.50083 * 359.97438 * 15 13 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 7 3.5051 1.4424 0.0006 5 6 4.1893 1.4425 1.1868 6 1 5.1221 0.9050 1.2721 7 6 3.6839 2.1336 2.2795 8 7 2.8258 3.1149 2.0980 9 14 4.2218 1.6708 4.0074 10 1 5.6928 1.8343 4.1286 11 1 3.5425 2.5528 4.9902 12 1 3.8571 0.2567 4.2773 13 6 4.2381 1.4422 -1.2679 14 6 5.7647 1.3656 -1.2016 15 6 5.0803 2.6763 -1.5972 16 1 -0.3633 0.5140 -0.8899 17 1 -0.3634 -1.0277 -0.0005 18 1 -0.3633 0.5139 0.8900 19 1 1.8933 -0.5138 -0.8900 20 1 1.8934 -0.5139 0.8899 21 1 1.6768 1.9563 0.8900 22 1 1.6768 1.9563 -0.8900 23 1 2.4259 3.5571 2.8631 24 1 3.7441 0.9344 -2.0962 25 1 6.2237 1.3149 -0.2142 26 1 6.2752 0.8075 -1.9865 27 1 5.1408 2.9801 -2.6423 28 1 5.0887 3.4886 -0.8704 RHF calculation, no. of doubly occupied orbitals= 32 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000023804164.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:01:04 Heat of formation + Delta-G solvation = 33.916952 kcal Electronic energy + Delta-G solvation = -10038.438644 eV Core-core repulsion = 8283.635235 eV Total energy + Delta-G solvation = -1754.803408 eV No. of doubly occupied orbitals = 32 Molecular weight (most abundant/longest-lived isotopes) = 169.116 amu Computer time = 0.14 seconds Orbital eigenvalues (eV) -37.02764 -34.14647 -32.20892 -29.80301 -25.54182 -23.46577 -21.36483 -20.54395 -19.52839 -16.24400 -15.39490 -14.57797 -14.07854 -13.41391 -13.07998 -12.44470 -11.91851 -11.48641 -11.23180 -10.75029 -10.70683 -10.57724 -10.49641 -10.08034 -9.80057 -9.55446 -9.41384 -9.18303 -8.40488 -6.50368 -5.72333 -3.33261 3.38349 3.44207 3.46532 4.49093 4.98959 5.31681 5.38321 5.88586 5.94723 5.97417 6.13977 6.20506 6.35889 6.53311 6.56670 6.61613 6.72549 6.90441 6.95050 7.10619 7.26553 7.32938 7.78693 7.85882 8.53375 9.21569 9.85343 10.41355 11.22482 Molecular weight = 169.12amu Principal moments of inertia in cm(-1) A = 0.030004 B = 0.023183 C = 0.015165 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 932.975094 B = 1207.467150 C = 1845.882947 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.140 4.140 3 C 0.144 3.856 4 N -0.555 5.555 5 C -0.255 4.255 6 H 0.065 0.935 7 C 0.008 3.992 8 N -0.885 5.885 9 Si 0.896 3.104 10 H -0.281 1.281 11 H -0.290 1.290 12 H -0.283 1.283 13 C 0.121 3.879 14 C -0.198 4.198 15 C -0.224 4.224 16 H 0.045 0.955 17 H 0.039 0.961 18 H 0.050 0.950 19 H 0.040 0.960 20 H 0.057 0.943 21 H 0.099 0.901 22 H 0.022 0.978 23 H 0.254 0.746 24 H 0.086 0.914 25 H 0.096 0.904 26 H 0.073 0.927 27 H 0.068 0.932 28 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.972 -3.619 -3.754 5.304 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.180 4.180 3 C 0.019 3.981 4 N -0.272 5.272 5 C -0.385 4.385 6 H 0.082 0.918 7 C -0.191 4.191 8 N -0.528 5.528 9 Si 0.725 3.275 10 H -0.207 1.207 11 H -0.216 1.216 12 H -0.209 1.209 13 C 0.012 3.988 14 C -0.236 4.236 15 C -0.265 4.265 16 H 0.064 0.936 17 H 0.058 0.942 18 H 0.069 0.931 19 H 0.059 0.941 20 H 0.075 0.925 21 H 0.117 0.883 22 H 0.041 0.959 23 H 0.064 0.936 24 H 0.103 0.897 25 H 0.114 0.886 26 H 0.092 0.908 27 H 0.087 0.913 28 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -1.043 -3.463 -3.605 5.106 hybrid contribution 0.323 -0.152 0.883 0.953 sum -0.720 -3.615 -2.721 4.582 Atomic orbital electron populations 1.21699 0.97535 0.99920 1.01098 1.22091 0.93634 1.01593 1.00667 1.21028 0.82795 0.92439 1.01862 1.43483 1.00923 1.83186 0.99565 1.19043 1.07140 1.24496 0.87792 0.91791 1.25114 1.00218 0.94731 0.99088 1.70049 1.32458 1.20547 1.29738 0.86474 0.78383 0.78048 0.84558 1.20725 1.21596 1.20897 1.21217 0.89062 0.97876 0.90631 1.23025 0.97189 1.01405 1.01969 1.23367 1.09982 0.93638 0.99489 0.93637 0.94161 0.93071 0.94138 0.92458 0.88324 0.95908 0.93588 0.89676 0.88551 0.90831 0.91302 0.89099 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.47 9.91 37.16 0.37 -2.11 15 2 C -0.14 -2.88 6.26 -26.73 -0.17 -3.05 15 3 C 0.14 3.47 5.34 -4.04 -0.02 3.45 15 4 N -0.55 -14.22 2.78 -165.67 -0.46 -14.68 15 5 C -0.26 -7.04 8.63 -15.06 -0.13 -7.17 15 6 H 0.06 1.76 6.55 -52.49 -0.34 1.42 15 7 C 0.01 0.24 4.96 -17.43 -0.09 0.15 15 8 N -0.89 -25.67 11.33 55.49 0.63 -25.04 15 9 Si 0.90 21.74 29.61 -169.99 -5.03 16.70 15 10 H -0.28 -6.76 7.11 56.52 0.40 -6.36 15 11 H -0.29 -7.05 7.11 56.52 0.40 -6.65 15 12 H -0.28 -6.80 7.11 56.52 0.40 -6.40 15 13 C 0.12 2.72 6.56 -67.93 -0.45 2.27 15 14 C -0.20 -4.07 9.80 -26.69 -0.26 -4.33 15 15 C -0.22 -4.76 10.36 -26.70 -0.28 -5.04 15 16 H 0.04 0.72 8.14 -51.93 -0.42 0.30 15 17 H 0.04 0.60 8.14 -51.93 -0.42 0.18 15 18 H 0.05 0.89 8.14 -51.93 -0.42 0.46 15 19 H 0.04 0.79 8.14 -51.93 -0.42 0.37 15 20 H 0.06 1.27 8.14 -51.93 -0.42 0.85 15 21 H 0.10 2.66 5.35 -51.93 -0.28 2.38 15 22 H 0.02 0.52 8.07 -51.93 -0.42 0.10 15 23 H 0.25 7.10 8.32 -40.82 -0.34 6.76 15 24 H 0.09 1.73 8.14 -51.93 -0.42 1.30 15 25 H 0.10 2.15 6.37 -51.93 -0.33 1.82 15 26 H 0.07 1.29 8.14 -51.93 -0.42 0.87 15 27 H 0.07 1.27 8.14 -51.93 -0.42 0.85 15 28 H 0.09 2.20 8.14 -51.93 -0.42 1.77 15 LS Contribution 234.80 15.07 3.54 3.54 Total: -1.00 -28.59 234.80 -6.66 -35.25 By element: Atomic # 1 Polarization: 4.35 SS G_CDS: -4.31 Total: 0.04 kcal Atomic # 6 Polarization: -14.80 SS G_CDS: -1.02 Total: -15.82 kcal Atomic # 7 Polarization: -39.88 SS G_CDS: 0.17 Total: -39.72 kcal Atomic # 14 Polarization: 21.74 SS G_CDS: -5.03 Total: 16.70 kcal Total LS contribution 3.54 Total: 3.54 kcal Total: -28.59 -6.66 -35.25 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000023804164.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.167 kcal (2) G-P(sol) polarization free energy of solvation -28.591 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.576 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.659 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.250 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.917 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.14 seconds