Wall clock time and date at job start Mon Mar 30 2020 02:01:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.53003 * 109.47212 * 2 1 4 4 N 1.46496 * 109.46867 * 179.97438 * 3 2 1 5 5 C 1.36935 * 120.00168 * 270.00096 * 4 3 2 6 6 H 1.07997 * 119.99803 * 144.92408 * 5 4 3 7 7 C 1.38812 * 120.00029 * 324.92336 * 5 4 3 8 8 N 1.31620 * 119.99923 * 337.94615 * 7 5 4 9 9 Si 1.86798 * 120.00018 * 157.95106 * 7 5 4 10 10 H 1.48498 * 109.47670 * 59.99599 * 9 7 5 11 11 H 1.48500 * 109.47161 * 180.02562 * 9 7 5 12 12 H 1.48508 * 109.46770 * 299.99456 * 9 7 5 13 13 C 1.46503 * 119.99704 * 90.00219 * 4 3 2 14 14 C 1.53004 * 117.49740 * 183.23422 * 13 4 3 15 15 C 1.52995 * 117.49870 * 114.57730 * 13 4 3 16 16 H 1.09000 * 109.47049 * 59.99220 * 1 2 3 17 17 H 1.09000 * 109.47293 * 179.97438 * 1 2 3 18 18 H 1.09005 * 109.46810 * 300.00102 * 1 2 3 19 19 H 1.09001 * 109.46702 * 240.00376 * 2 1 3 20 20 H 1.08994 * 109.46972 * 120.00359 * 2 1 3 21 21 H 1.08995 * 109.46805 * 60.00115 * 3 2 1 22 22 H 1.09000 * 109.47048 * 300.00092 * 3 2 1 23 23 H 0.96995 * 119.99672 * 175.76702 * 8 7 5 24 24 H 1.08999 * 115.55313 * 328.90767 * 13 4 3 25 25 H 1.09001 * 117.49599 * 0.02562 * 14 13 4 26 26 H 1.09000 * 117.49619 * 145.02077 * 14 13 4 27 27 H 1.09002 * 117.50220 * 214.97803 * 15 13 4 28 28 H 1.09001 * 117.50083 * 359.97438 * 15 13 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 7 3.5051 1.4424 0.0006 5 6 4.1893 1.4425 1.1868 6 1 5.1221 0.9050 1.2721 7 6 3.6839 2.1336 2.2795 8 7 2.8258 3.1149 2.0980 9 14 4.2218 1.6708 4.0074 10 1 5.6928 1.8343 4.1286 11 1 3.5425 2.5528 4.9902 12 1 3.8571 0.2567 4.2773 13 6 4.2381 1.4422 -1.2679 14 6 5.7647 1.3656 -1.2016 15 6 5.0803 2.6763 -1.5972 16 1 -0.3633 0.5140 -0.8899 17 1 -0.3634 -1.0277 -0.0005 18 1 -0.3633 0.5139 0.8900 19 1 1.8933 -0.5138 -0.8900 20 1 1.8934 -0.5139 0.8899 21 1 1.6768 1.9563 0.8900 22 1 1.6768 1.9563 -0.8900 23 1 2.4259 3.5571 2.8631 24 1 3.7441 0.9344 -2.0962 25 1 6.2237 1.3149 -0.2142 26 1 6.2752 0.8075 -1.9865 27 1 5.1408 2.9801 -2.6423 28 1 5.0887 3.4886 -0.8704 RHF calculation, no. of doubly occupied orbitals= 32 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000023804164.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:01:04 Heat of formation + Delta-G solvation = 17.926984 kcal Electronic energy + Delta-G solvation = -10039.132021 eV Core-core repulsion = 8283.635235 eV Total energy + Delta-G solvation = -1755.496785 eV No. of doubly occupied orbitals = 32 Molecular weight (most abundant/longest-lived isotopes) = 169.116 amu Computer time = 0.12 seconds Orbital eigenvalues (eV) -38.84526 -35.90287 -34.10226 -31.68426 -27.44817 -25.29196 -23.05628 -22.23060 -21.40393 -18.24957 -17.26810 -16.46324 -15.89990 -15.10927 -14.78066 -14.18797 -13.70103 -13.24166 -13.10821 -12.62502 -12.45482 -12.27212 -12.18100 -11.91570 -11.66019 -11.34225 -11.22233 -10.88748 -10.45803 -8.53001 -7.78409 -5.44439 1.44361 1.46587 1.53518 2.49488 3.13804 3.41466 3.53473 4.28998 4.34765 4.42980 4.52834 4.56108 4.70881 4.88278 4.92619 5.05703 5.12951 5.27207 5.33266 5.40297 5.52338 5.59429 5.68355 5.90268 6.45671 7.15895 7.87583 8.37019 9.11747 Molecular weight = 169.12amu Principal moments of inertia in cm(-1) A = 0.030004 B = 0.023183 C = 0.015165 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 932.975094 B = 1207.467150 C = 1845.882947 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.129 4.129 3 C 0.143 3.857 4 N -0.574 5.574 5 C -0.261 4.261 6 H 0.060 0.940 7 C -0.041 4.041 8 N -0.917 5.917 9 Si 0.955 3.045 10 H -0.276 1.276 11 H -0.292 1.292 12 H -0.278 1.278 13 C 0.098 3.902 14 C -0.182 4.182 15 C -0.220 4.220 16 H 0.059 0.941 17 H 0.065 0.935 18 H 0.041 0.959 19 H 0.052 0.948 20 H 0.035 0.965 21 H 0.067 0.933 22 H 0.026 0.974 23 H 0.251 0.749 24 H 0.112 0.888 25 H 0.073 0.927 26 H 0.113 0.887 27 H 0.103 0.897 28 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.813 -4.725 -4.700 6.714 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.168 4.168 3 C 0.018 3.982 4 N -0.292 5.292 5 C -0.391 4.391 6 H 0.077 0.923 7 C -0.238 4.238 8 N -0.561 5.561 9 Si 0.783 3.217 10 H -0.202 1.202 11 H -0.218 1.218 12 H -0.204 1.204 13 C -0.010 4.010 14 C -0.220 4.220 15 C -0.260 4.260 16 H 0.078 0.922 17 H 0.084 0.916 18 H 0.061 0.939 19 H 0.071 0.929 20 H 0.053 0.947 21 H 0.085 0.915 22 H 0.045 0.955 23 H 0.060 0.940 24 H 0.129 0.871 25 H 0.091 0.909 26 H 0.131 0.869 27 H 0.121 0.879 28 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -0.873 -4.582 -4.568 6.528 hybrid contribution 0.299 0.202 1.097 1.154 sum -0.573 -4.380 -3.471 5.618 Atomic orbital electron populations 1.21638 0.94780 1.01723 1.01411 1.21913 0.96001 0.98812 1.00114 1.20988 0.82431 0.94386 1.00441 1.43721 1.01625 1.83627 1.00228 1.19233 1.07004 1.23791 0.89084 0.92286 1.25801 1.00794 0.94876 1.02297 1.70176 1.33908 1.21700 1.30284 0.85537 0.78048 0.77672 0.80437 1.20202 1.21756 1.20404 1.21558 0.90140 0.99083 0.90212 1.23039 0.95968 1.00941 1.02028 1.23280 1.09830 0.92537 1.00400 0.92190 0.91579 0.93946 0.92895 0.94651 0.91476 0.95545 0.93999 0.87067 0.90855 0.86884 0.87861 0.92906 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.43 9.91 71.98 0.71 -3.71 15 2 C -0.13 -5.15 6.26 30.60 0.19 -4.96 15 3 C 0.14 6.87 5.34 86.38 0.46 7.33 15 4 N -0.57 -29.35 2.78 -678.05 -1.88 -31.24 15 5 C -0.26 -14.51 8.63 84.03 0.73 -13.78 15 6 H 0.06 3.28 6.55 -2.91 -0.02 3.26 15 7 C -0.04 -2.29 4.96 84.86 0.42 -1.87 15 8 N -0.92 -54.34 11.33 21.65 0.25 -54.09 15 9 Si 0.96 45.19 29.61 68.60 2.03 47.23 15 10 H -0.28 -12.73 7.11 99.48 0.71 -12.02 15 11 H -0.29 -13.74 7.11 99.48 0.71 -13.04 15 12 H -0.28 -12.82 7.11 99.48 0.71 -12.12 15 13 C 0.10 4.24 6.56 44.99 0.30 4.53 15 14 C -0.18 -7.09 9.80 30.62 0.30 -6.79 15 15 C -0.22 -9.02 10.36 30.62 0.32 -8.71 15 16 H 0.06 1.75 8.14 -2.39 -0.02 1.73 15 17 H 0.07 1.79 8.14 -2.39 -0.02 1.77 15 18 H 0.04 1.42 8.14 -2.38 -0.02 1.40 15 19 H 0.05 1.96 8.14 -2.39 -0.02 1.94 15 20 H 0.03 1.54 8.14 -2.39 -0.02 1.52 15 21 H 0.07 3.70 5.35 -2.39 -0.01 3.69 15 22 H 0.03 1.21 8.07 -2.39 -0.02 1.19 15 23 H 0.25 14.37 8.32 -92.71 -0.77 13.60 15 24 H 0.11 4.18 8.14 -2.39 -0.02 4.16 15 25 H 0.07 3.21 6.37 -2.39 -0.02 3.20 15 26 H 0.11 3.52 8.14 -2.39 -0.02 3.50 15 27 H 0.10 3.50 8.14 -2.39 -0.02 3.48 15 28 H 0.05 2.57 8.14 -2.39 -0.02 2.55 15 Total: -1.00 -61.18 234.80 4.93 -56.26 By element: Atomic # 1 Polarization: 8.70 SS G_CDS: 1.11 Total: 9.80 kcal Atomic # 6 Polarization: -31.38 SS G_CDS: 3.42 Total: -27.96 kcal Atomic # 7 Polarization: -83.69 SS G_CDS: -1.64 Total: -85.33 kcal Atomic # 14 Polarization: 45.19 SS G_CDS: 2.03 Total: 47.23 kcal Total: -61.18 4.93 -56.26 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000023804164.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.186 kcal (2) G-P(sol) polarization free energy of solvation -61.184 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.002 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.925 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.259 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.927 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.12 seconds