Wall clock time and date at job start Mon Mar 30 2020 02:01:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52998 * 109.47363 * 2 1 4 4 N 1.46500 * 109.47053 * 120.00026 * 2 1 3 5 5 C 1.36936 * 120.00064 * 301.50918 * 4 2 1 6 6 H 1.07999 * 120.00088 * 305.16591 * 5 4 2 7 7 C 1.38812 * 120.00046 * 125.16041 * 5 4 2 8 8 N 1.31616 * 119.99963 * 344.77896 * 7 5 4 9 9 Si 1.86806 * 120.00104 * 164.78002 * 7 5 4 10 10 H 1.48502 * 109.46842 * 0.02562 * 9 7 5 11 11 H 1.48500 * 109.47077 * 119.99658 * 9 7 5 12 12 H 1.48493 * 109.47043 * 240.00347 * 9 7 5 13 13 C 1.46500 * 120.00206 * 121.23643 * 4 2 1 14 14 C 1.53002 * 117.50017 * 188.62407 * 13 4 2 15 15 C 1.52995 * 117.50001 * 119.99945 * 13 4 2 16 16 H 1.09005 * 109.46897 * 305.47544 * 1 2 3 17 17 H 1.08994 * 109.46799 * 65.46702 * 1 2 3 18 18 H 1.08993 * 109.47331 * 185.47220 * 1 2 3 19 19 H 1.08996 * 109.47044 * 239.99839 * 2 1 3 20 20 H 1.09000 * 109.46953 * 174.07026 * 3 2 1 21 21 H 1.08999 * 109.46854 * 294.06773 * 3 2 1 22 22 H 1.09002 * 109.47216 * 54.06739 * 3 2 1 23 23 H 0.97001 * 119.99943 * 180.02562 * 8 7 5 24 24 H 1.08999 * 115.54728 * 334.32408 * 13 4 2 25 25 H 1.09002 * 117.49527 * 359.97438 * 14 13 4 26 26 H 1.09001 * 117.50125 * 145.02231 * 14 13 4 27 27 H 1.08998 * 117.49973 * 214.97961 * 15 13 4 28 28 H 1.09001 * 117.49957 * 359.97438 * 15 13 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 7 2.0183 -0.6906 1.1962 5 6 1.6622 -0.2411 2.4397 6 1 1.8481 0.7862 2.7162 7 6 1.0621 -1.1058 3.3447 8 7 0.5640 -2.2511 2.9295 9 14 0.9615 -0.6438 5.1519 10 1 1.5897 0.6858 5.3586 11 1 -0.4623 -0.5884 5.5702 12 1 1.6767 -1.6612 5.9634 13 6 2.8828 -1.8657 1.0620 14 6 3.1949 -2.6618 2.3308 15 6 4.2771 -1.7922 1.6875 16 1 -0.3633 0.5964 0.8369 17 1 -0.3633 0.4267 -0.9349 18 1 -0.3633 -1.0229 0.0980 19 1 1.8933 -0.5138 -0.8899 20 1 3.1249 1.4442 0.1062 21 1 1.7661 1.9247 -0.9383 22 1 1.5926 1.9861 0.8321 23 1 0.1443 -2.8551 3.5619 24 1 2.7775 -2.4229 0.1311 25 1 2.7574 -2.3109 3.2654 26 1 3.2950 -3.7429 2.2348 27 1 5.0891 -2.3013 1.1684 28 1 4.5514 -0.8694 2.1986 RHF calculation, no. of doubly occupied orbitals= 32 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000023811920.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:01:06 Heat of formation + Delta-G solvation = 26.984505 kcal Electronic energy + Delta-G solvation = -10327.144372 eV Core-core repulsion = 8572.040351 eV Total energy + Delta-G solvation = -1755.104022 eV No. of doubly occupied orbitals = 32 Molecular weight (most abundant/longest-lived isotopes) = 169.116 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -38.97972 -35.79111 -33.95426 -30.49549 -27.70276 -26.40995 -22.74294 -21.98975 -21.32486 -18.15400 -16.92038 -16.49859 -15.59515 -15.00797 -14.45300 -14.10180 -13.70183 -13.13479 -12.99981 -12.72847 -12.52888 -12.24942 -12.08833 -11.97475 -11.73768 -11.31944 -11.04262 -10.66945 -10.12770 -8.24121 -7.63277 -5.60262 1.39802 1.45022 1.52957 2.46822 3.24032 3.53844 3.65434 4.37974 4.45530 4.59991 4.70948 4.78570 4.82639 4.98554 5.04366 5.07658 5.23975 5.25351 5.29572 5.53653 5.66388 5.72740 5.79387 5.84758 6.62746 7.31068 7.87971 8.52862 9.15592 Molecular weight = 169.12amu Principal moments of inertia in cm(-1) A = 0.039074 B = 0.023417 C = 0.018384 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 716.418684 B = 1195.435030 C = 1522.715426 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C 0.157 3.843 3 C -0.140 4.140 4 N -0.566 5.566 5 C -0.275 4.275 6 H 0.039 0.961 7 C 0.003 3.997 8 N -0.892 5.892 9 Si 0.934 3.066 10 H -0.270 1.270 11 H -0.288 1.288 12 H -0.286 1.286 13 C 0.131 3.869 14 C -0.176 4.176 15 C -0.217 4.217 16 H 0.031 0.969 17 H 0.063 0.937 18 H 0.025 0.975 19 H 0.059 0.941 20 H 0.041 0.959 21 H 0.069 0.931 22 H 0.035 0.965 23 H 0.250 0.750 24 H 0.088 0.912 25 H 0.083 0.917 26 H 0.071 0.929 27 H 0.096 0.904 28 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.794 2.383 -3.846 5.318 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C 0.051 3.949 3 C -0.199 4.199 4 N -0.285 5.285 5 C -0.406 4.406 6 H 0.056 0.944 7 C -0.197 4.197 8 N -0.532 5.532 9 Si 0.761 3.239 10 H -0.195 1.195 11 H -0.214 1.214 12 H -0.212 1.212 13 C 0.023 3.977 14 C -0.214 4.214 15 C -0.258 4.258 16 H 0.051 0.949 17 H 0.082 0.918 18 H 0.044 0.956 19 H 0.077 0.923 20 H 0.060 0.940 21 H 0.088 0.912 22 H 0.054 0.946 23 H 0.059 0.941 24 H 0.106 0.894 25 H 0.101 0.899 26 H 0.089 0.911 27 H 0.114 0.886 28 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 2.661 2.271 -3.796 5.162 hybrid contribution -0.275 -0.112 1.328 1.361 sum 2.385 2.159 -2.468 4.055 Atomic orbital electron populations 1.21898 0.97614 0.99764 0.99675 1.20634 0.92610 0.92816 0.88825 1.22010 0.99980 0.97224 1.00694 1.43488 1.52791 1.30578 1.01664 1.18699 1.35084 0.95551 0.91243 0.94402 1.26011 0.95071 0.97133 1.01523 1.70227 1.37813 1.11206 1.33944 0.85787 0.77220 0.78230 0.82648 1.19492 1.21431 1.21215 1.20917 0.90385 0.91739 0.94694 1.22982 1.02894 0.95447 1.00115 1.23398 0.93886 1.01284 1.07208 0.94934 0.91821 0.95624 0.92281 0.93993 0.91191 0.94574 0.94059 0.89423 0.89851 0.91099 0.88614 0.91393 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.45 9.05 71.98 0.65 -4.80 15 2 C 0.16 6.58 3.38 44.99 0.15 6.73 15 3 C -0.14 -5.15 9.07 71.98 0.65 -4.50 15 4 N -0.57 -28.02 2.55 -654.27 -1.67 -29.69 15 5 C -0.27 -14.86 7.44 84.03 0.63 -14.23 15 6 H 0.04 2.13 7.40 -2.91 -0.02 2.11 15 7 C 0.00 0.18 3.13 84.86 0.27 0.44 15 8 N -0.89 -50.67 11.55 21.65 0.25 -50.42 15 9 Si 0.93 43.94 29.43 68.60 2.02 45.96 15 10 H -0.27 -12.45 7.11 99.48 0.71 -11.75 15 11 H -0.29 -13.48 7.11 99.48 0.71 -12.77 15 12 H -0.29 -13.38 7.11 99.48 0.71 -12.67 15 13 C 0.13 6.12 6.16 44.99 0.28 6.40 15 14 C -0.18 -8.33 8.47 30.60 0.26 -8.07 15 15 C -0.22 -9.12 10.27 30.59 0.31 -8.80 15 16 H 0.03 1.46 7.81 -2.38 -0.02 1.44 15 17 H 0.06 2.13 8.14 -2.39 -0.02 2.11 15 18 H 0.02 1.17 8.14 -2.39 -0.02 1.15 15 19 H 0.06 2.28 7.89 -2.39 -0.02 2.26 15 20 H 0.04 1.54 8.14 -2.39 -0.02 1.52 15 21 H 0.07 2.07 8.14 -2.39 -0.02 2.05 15 22 H 0.04 1.42 7.55 -2.39 -0.02 1.40 15 23 H 0.25 13.81 8.31 -92.71 -0.77 13.04 15 24 H 0.09 3.84 8.09 -2.39 -0.02 3.82 15 25 H 0.08 4.47 4.75 -2.39 -0.01 4.46 15 26 H 0.07 3.14 8.14 -2.39 -0.02 3.12 15 27 H 0.10 3.38 8.14 -2.39 -0.02 3.36 15 28 H 0.07 3.02 8.14 -2.39 -0.02 3.00 15 Total: -1.00 -58.22 230.64 4.90 -53.32 By element: Atomic # 1 Polarization: 6.55 SS G_CDS: 1.11 Total: 7.66 kcal Atomic # 6 Polarization: -30.02 SS G_CDS: 3.20 Total: -26.83 kcal Atomic # 7 Polarization: -78.68 SS G_CDS: -1.42 Total: -80.10 kcal Atomic # 14 Polarization: 43.94 SS G_CDS: 2.02 Total: 45.96 kcal Total: -58.22 4.90 -53.32 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000023811920.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.302 kcal (2) G-P(sol) polarization free energy of solvation -58.220 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.082 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.902 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.318 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.985 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds