Wall clock time and date at job start Mon Mar 30 2020 02:12:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46906 * 1 3 3 C 1.46850 * 110.99943 * 2 1 4 4 C 1.53034 * 109.52650 * 174.15678 * 3 2 1 5 5 C 1.53119 * 109.27558 * 59.17663 * 4 3 2 6 6 C 1.53116 * 109.15404 * 302.34319 * 5 4 3 7 7 C 1.46845 * 111.00351 * 235.79025 * 2 1 3 8 8 H 1.09002 * 109.45898 * 65.83436 * 7 2 1 9 9 C 1.50704 * 109.45808 * 305.85670 * 7 2 1 10 10 H 1.07993 * 119.99915 * 330.25827 * 9 7 2 11 11 C 1.37878 * 119.99392 * 150.26352 * 9 7 2 12 12 N 1.31515 * 120.00424 * 7.51783 * 11 9 7 13 13 Si 1.86804 * 119.99711 * 187.51928 * 11 9 7 14 14 H 1.48494 * 109.47326 * 179.97438 * 13 11 9 15 15 H 1.48508 * 109.46887 * 299.99773 * 13 11 9 16 16 H 1.48502 * 109.47272 * 59.99590 * 13 11 9 17 17 H 1.08995 * 109.46787 * 190.39273 * 1 2 3 18 18 H 1.09001 * 109.47537 * 310.39492 * 1 2 3 19 19 H 1.08998 * 109.46799 * 70.39417 * 1 2 3 20 20 H 1.09000 * 109.46180 * 294.17646 * 3 2 1 21 21 H 1.09000 * 109.45813 * 54.14074 * 3 2 1 22 22 H 1.08991 * 109.50467 * 179.12060 * 4 3 2 23 23 H 1.08998 * 109.50011 * 299.24176 * 4 3 2 24 24 H 1.09006 * 109.52100 * 62.25115 * 5 4 3 25 25 H 1.08999 * 109.52220 * 182.37393 * 5 4 3 26 26 H 1.08997 * 109.51052 * 297.72206 * 6 5 4 27 27 H 1.09006 * 109.49697 * 177.60388 * 6 5 4 28 28 H 0.96994 * 119.99863 * 356.05995 * 12 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4691 0.0000 0.0000 3 6 1.9953 1.3710 0.0000 4 6 3.5181 1.3343 0.1468 5 6 4.1189 0.5370 -1.0142 6 6 3.5182 -0.8714 -1.0204 7 6 1.9954 -0.7707 -1.1337 8 1 1.7328 -0.2707 -2.0659 9 6 1.3983 -2.1544 -1.1205 10 1 1.1130 -2.6105 -0.1841 11 6 1.2163 -2.8379 -2.3040 12 7 1.6964 -2.3488 -3.4265 13 14 0.2878 -4.4588 -2.3132 14 1 0.2296 -4.9881 -3.6994 15 1 0.9870 -5.4347 -1.4391 16 1 -1.0918 -4.2419 -1.8083 17 1 -0.3633 -1.0108 0.1854 18 1 -0.3634 0.6660 0.7827 19 1 -0.3633 0.3448 -0.9681 20 1 1.7325 1.8608 -0.9376 21 1 1.5634 1.9257 0.8329 22 1 3.9098 2.3513 0.1311 23 1 3.7813 0.8569 1.0907 24 1 3.8887 1.0355 -1.9559 25 1 5.1999 0.4725 -0.8909 26 1 3.7813 -1.3834 -0.0948 27 1 3.9101 -1.4303 -1.8702 28 1 2.1283 -1.4803 -3.4315 RHF calculation, no. of doubly occupied orbitals= 32 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000036466145.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:12:48 Heat of formation + Delta-G solvation = -15.341632 kcal Electronic energy + Delta-G solvation = -10269.749711 eV Core-core repulsion = 8512.810290 eV Total energy + Delta-G solvation = -1756.939421 eV No. of doubly occupied orbitals = 32 Molecular weight (most abundant/longest-lived isotopes) = 169.116 amu Computer time = 0.09 seconds Orbital eigenvalues (eV) -38.06061 -33.10882 -32.55400 -29.44214 -25.85583 -24.53522 -21.92665 -21.24082 -18.88125 -16.78985 -14.63736 -14.51255 -13.71344 -13.61290 -13.54747 -12.77314 -12.19685 -11.62010 -11.45742 -11.12135 -10.80405 -10.71456 -10.28072 -10.13279 -10.04399 -9.81755 -9.50673 -8.60493 -8.17806 -7.19084 -6.34957 -4.04096 3.44865 3.46198 3.65225 4.52560 5.00399 5.36331 5.52655 5.61068 5.74900 6.10344 6.13967 6.24855 6.28589 6.41382 6.47069 6.62930 6.71525 6.82370 6.89868 7.04344 7.18565 7.48347 7.96147 8.11064 8.45400 8.64299 8.90989 9.68235 11.03089 Molecular weight = 169.12amu Principal moments of inertia in cm(-1) A = 0.063619 B = 0.016715 C = 0.014406 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 440.016218 B = 1674.768556 C = 1943.131290 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.048 3.952 2 N -0.539 5.539 3 C 0.054 3.946 4 C -0.110 4.110 5 C -0.125 4.125 6 C -0.102 4.102 7 C 0.200 3.800 8 H 0.002 0.998 9 C -0.584 4.584 10 H 0.056 0.944 11 C 0.018 3.982 12 N -0.913 5.913 13 Si 1.069 2.931 14 H -0.284 1.284 15 H -0.287 1.287 16 H -0.288 1.288 17 H 0.074 0.926 18 H 0.039 0.961 19 H 0.011 0.989 20 H 0.017 0.983 21 H 0.057 0.943 22 H 0.051 0.949 23 H 0.064 0.936 24 H 0.048 0.952 25 H 0.048 0.952 26 H 0.054 0.946 27 H 0.055 0.945 28 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.708 4.676 4.699 6.666 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.100 4.100 2 N -0.265 5.265 3 C -0.075 4.075 4 C -0.148 4.148 5 C -0.163 4.163 6 C -0.141 4.141 7 C 0.093 3.907 8 H 0.020 0.980 9 C -0.623 4.623 10 H 0.074 0.926 11 C -0.186 4.186 12 N -0.549 5.549 13 Si 0.897 3.103 14 H -0.209 1.209 15 H -0.214 1.214 16 H -0.215 1.215 17 H 0.093 0.907 18 H 0.058 0.942 19 H 0.029 0.971 20 H 0.035 0.965 21 H 0.075 0.925 22 H 0.070 0.930 23 H 0.082 0.918 24 H 0.067 0.933 25 H 0.066 0.934 26 H 0.072 0.928 27 H 0.074 0.926 28 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 0.385 3.197 4.135 5.241 hybrid contribution 0.245 1.739 0.223 1.771 sum 0.630 4.937 4.358 6.615 Atomic orbital electron populations 1.22036 0.88488 1.01818 0.97671 1.62037 1.06994 1.10463 1.46967 1.22021 0.95256 0.91568 0.98612 1.21511 0.95197 0.98696 0.99392 1.21701 0.98655 0.98366 0.97553 1.21707 0.97869 0.93513 1.00971 1.19433 0.90979 0.93656 0.86603 0.97999 1.21866 1.44548 1.00570 0.95334 0.92593 1.25843 0.96168 1.04314 0.92292 1.70807 1.36107 1.19193 1.28813 0.83544 0.75985 0.74895 0.75864 1.20896 1.21389 1.21465 0.90726 0.94233 0.97064 0.96469 0.92471 0.93018 0.91758 0.93289 0.93366 0.92765 0.92611 0.92012 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.05 1.03 9.14 60.07 0.55 1.58 15 2 N -0.54 -12.36 4.74 -236.32 -1.12 -13.48 15 3 C 0.05 1.05 5.46 -3.83 -0.02 1.03 15 4 C -0.11 -1.95 6.09 -26.65 -0.16 -2.11 15 5 C -0.13 -2.43 6.00 -26.61 -0.16 -2.59 15 6 C -0.10 -2.40 5.32 -26.65 -0.14 -2.55 15 7 C 0.20 5.15 1.49 -68.88 -0.10 5.05 15 8 H 0.00 0.07 6.79 -51.93 -0.35 -0.29 15 9 C -0.58 -16.46 7.05 -34.44 -0.24 -16.71 15 10 H 0.06 1.60 7.57 -52.49 -0.40 1.21 15 11 C 0.02 0.52 5.44 -17.82 -0.10 0.42 15 12 N -0.91 -27.57 13.62 55.43 0.75 -26.82 15 13 Si 1.07 25.26 29.91 -169.99 -5.08 20.18 15 14 H -0.28 -6.73 7.11 56.52 0.40 -6.32 15 15 H -0.29 -6.53 7.11 56.52 0.40 -6.13 15 16 H -0.29 -6.51 7.11 56.52 0.40 -6.10 15 17 H 0.07 1.68 7.02 -51.93 -0.36 1.31 15 18 H 0.04 0.71 7.98 -51.93 -0.41 0.30 15 19 H 0.01 0.24 8.12 -51.93 -0.42 -0.18 15 20 H 0.02 0.34 8.14 -51.93 -0.42 -0.08 15 21 H 0.06 0.98 8.01 -51.93 -0.42 0.56 15 22 H 0.05 0.77 8.14 -51.93 -0.42 0.35 15 23 H 0.06 1.14 8.14 -51.93 -0.42 0.71 15 24 H 0.05 0.96 8.14 -51.93 -0.42 0.53 15 25 H 0.05 0.83 8.14 -51.93 -0.42 0.41 15 26 H 0.05 1.29 8.14 -51.93 -0.42 0.87 15 27 H 0.06 1.40 8.03 -51.93 -0.42 0.98 15 28 H 0.27 8.12 6.59 -40.82 -0.27 7.86 15 LS Contribution 224.56 15.07 3.38 3.38 Total: -1.00 -29.80 224.56 -6.83 -36.63 By element: Atomic # 1 Polarization: 0.36 SS G_CDS: -4.38 Total: -4.02 kcal Atomic # 6 Polarization: -15.49 SS G_CDS: -0.38 Total: -15.87 kcal Atomic # 7 Polarization: -39.94 SS G_CDS: -0.36 Total: -40.30 kcal Atomic # 14 Polarization: 25.26 SS G_CDS: -5.08 Total: 20.18 kcal Total LS contribution 3.38 Total: 3.38 kcal Total: -29.80 -6.83 -36.63 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000036466145.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.287 kcal (2) G-P(sol) polarization free energy of solvation -29.800 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.513 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.828 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.629 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.342 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.09 seconds