Wall clock time and date at job start Mon Mar 30 2020 02:12:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46906 * 1 3 3 C 1.46850 * 110.99943 * 2 1 4 4 C 1.53034 * 109.52650 * 174.15678 * 3 2 1 5 5 C 1.53119 * 109.27558 * 59.17663 * 4 3 2 6 6 C 1.53116 * 109.15404 * 302.34319 * 5 4 3 7 7 C 1.46845 * 111.00351 * 235.79025 * 2 1 3 8 8 H 1.09002 * 109.45898 * 65.83436 * 7 2 1 9 9 C 1.50704 * 109.45808 * 305.85670 * 7 2 1 10 10 H 1.07993 * 119.99915 * 330.25827 * 9 7 2 11 11 C 1.37878 * 119.99392 * 150.26352 * 9 7 2 12 12 N 1.31515 * 120.00424 * 7.51783 * 11 9 7 13 13 Si 1.86804 * 119.99711 * 187.51928 * 11 9 7 14 14 H 1.48494 * 109.47326 * 179.97438 * 13 11 9 15 15 H 1.48508 * 109.46887 * 299.99773 * 13 11 9 16 16 H 1.48502 * 109.47272 * 59.99590 * 13 11 9 17 17 H 1.08995 * 109.46787 * 190.39273 * 1 2 3 18 18 H 1.09001 * 109.47537 * 310.39492 * 1 2 3 19 19 H 1.08998 * 109.46799 * 70.39417 * 1 2 3 20 20 H 1.09000 * 109.46180 * 294.17646 * 3 2 1 21 21 H 1.09000 * 109.45813 * 54.14074 * 3 2 1 22 22 H 1.08991 * 109.50467 * 179.12060 * 4 3 2 23 23 H 1.08998 * 109.50011 * 299.24176 * 4 3 2 24 24 H 1.09006 * 109.52100 * 62.25115 * 5 4 3 25 25 H 1.08999 * 109.52220 * 182.37393 * 5 4 3 26 26 H 1.08997 * 109.51052 * 297.72206 * 6 5 4 27 27 H 1.09006 * 109.49697 * 177.60388 * 6 5 4 28 28 H 0.96994 * 119.99863 * 356.05995 * 12 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4691 0.0000 0.0000 3 6 1.9953 1.3710 0.0000 4 6 3.5181 1.3343 0.1468 5 6 4.1189 0.5370 -1.0142 6 6 3.5182 -0.8714 -1.0204 7 6 1.9954 -0.7707 -1.1337 8 1 1.7328 -0.2707 -2.0659 9 6 1.3983 -2.1544 -1.1205 10 1 1.1130 -2.6105 -0.1841 11 6 1.2163 -2.8379 -2.3040 12 7 1.6964 -2.3488 -3.4265 13 14 0.2878 -4.4588 -2.3132 14 1 0.2296 -4.9881 -3.6994 15 1 0.9870 -5.4347 -1.4391 16 1 -1.0918 -4.2419 -1.8083 17 1 -0.3633 -1.0108 0.1854 18 1 -0.3634 0.6660 0.7827 19 1 -0.3633 0.3448 -0.9681 20 1 1.7325 1.8608 -0.9376 21 1 1.5634 1.9257 0.8329 22 1 3.9098 2.3513 0.1311 23 1 3.7813 0.8569 1.0907 24 1 3.8887 1.0355 -1.9559 25 1 5.1999 0.4725 -0.8909 26 1 3.7813 -1.3834 -0.0948 27 1 3.9101 -1.4303 -1.8702 28 1 2.1283 -1.4803 -3.4315 RHF calculation, no. of doubly occupied orbitals= 32 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000036466145.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:12:48 Heat of formation + Delta-G solvation = -35.253126 kcal Electronic energy + Delta-G solvation = -10270.613138 eV Core-core repulsion = 8512.810290 eV Total energy + Delta-G solvation = -1757.802848 eV No. of doubly occupied orbitals = 32 Molecular weight (most abundant/longest-lived isotopes) = 169.116 amu Computer time = 0.10 seconds Orbital eigenvalues (eV) -39.82955 -35.15480 -34.27503 -31.29654 -27.62377 -26.57813 -23.65782 -23.07553 -20.61569 -18.88771 -16.48107 -16.29508 -15.65362 -15.35801 -15.16793 -14.48985 -13.90420 -13.45199 -13.34401 -12.97307 -12.66151 -12.39263 -12.05810 -11.92982 -11.77178 -11.59689 -11.19812 -10.70884 -10.27302 -9.05904 -8.61959 -6.32251 1.52298 1.60005 1.79535 2.55795 3.13412 3.34649 4.00113 4.08349 4.16660 4.44376 4.51432 4.63305 4.71737 4.72762 4.86086 4.96223 5.06907 5.13113 5.17124 5.21802 5.41724 5.52872 5.98453 6.02134 6.46630 6.50004 6.76889 7.48263 8.75199 Molecular weight = 169.12amu Principal moments of inertia in cm(-1) A = 0.063619 B = 0.016715 C = 0.014406 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 440.016218 B = 1674.768556 C = 1943.131290 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.050 3.950 2 N -0.549 5.549 3 C 0.049 3.951 4 C -0.104 4.104 5 C -0.120 4.120 6 C -0.097 4.097 7 C 0.201 3.799 8 H -0.034 1.034 9 C -0.592 4.592 10 H 0.048 0.952 11 C -0.032 4.032 12 N -0.938 5.938 13 Si 1.114 2.886 14 H -0.285 1.285 15 H -0.271 1.271 16 H -0.271 1.271 17 H 0.056 0.944 18 H 0.079 0.921 19 H -0.005 1.005 20 H 0.009 0.991 21 H 0.088 0.912 22 H 0.090 0.910 23 H 0.068 0.932 24 H 0.042 0.958 25 H 0.074 0.926 26 H 0.049 0.951 27 H 0.027 0.973 28 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.785 5.368 6.133 8.188 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.098 4.098 2 N -0.274 5.274 3 C -0.079 4.079 4 C -0.142 4.142 5 C -0.158 4.158 6 C -0.136 4.136 7 C 0.093 3.907 8 H -0.017 1.017 9 C -0.631 4.631 10 H 0.066 0.934 11 C -0.230 4.230 12 N -0.576 5.576 13 Si 0.936 3.064 14 H -0.211 1.211 15 H -0.196 1.196 16 H -0.196 1.196 17 H 0.075 0.925 18 H 0.097 0.903 19 H 0.014 0.986 20 H 0.027 0.973 21 H 0.107 0.893 22 H 0.109 0.891 23 H 0.087 0.913 24 H 0.061 0.939 25 H 0.093 0.907 26 H 0.067 0.933 27 H 0.046 0.954 28 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges 0.468 3.914 5.596 6.845 hybrid contribution 0.219 1.584 -0.176 1.609 sum 0.686 5.498 5.420 7.751 Atomic orbital electron populations 1.22047 0.87885 1.01688 0.98204 1.62002 1.07762 1.12674 1.44962 1.22219 0.96735 0.89510 0.99481 1.21524 0.93714 1.00574 0.98386 1.21653 1.00180 0.95556 0.98422 1.21543 0.96545 0.96192 0.99318 1.19300 0.92419 0.92749 0.86190 1.01659 1.22144 1.44183 1.01816 0.94922 0.93416 1.27262 0.96379 1.07429 0.91941 1.70930 1.37866 1.19047 1.29743 0.82969 0.75806 0.71532 0.76101 1.21071 1.19605 1.19590 0.92519 0.90262 0.98601 0.97251 0.89339 0.89141 0.91286 0.93892 0.90688 0.93259 0.95436 0.93477 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.05 2.09 9.14 127.69 1.17 3.26 15 2 N -0.55 -24.59 4.74 -901.59 -4.27 -28.86 15 3 C 0.05 1.75 5.46 86.32 0.47 2.22 15 4 C -0.10 -3.33 6.09 30.65 0.19 -3.14 15 5 C -0.12 -4.47 6.00 30.67 0.18 -4.28 15 6 C -0.10 -4.62 5.32 30.64 0.16 -4.45 15 7 C 0.20 10.52 1.49 44.19 0.07 10.58 15 8 H -0.03 -2.01 6.79 -2.39 -0.02 -2.03 15 9 C -0.59 -33.91 7.05 25.60 0.18 -33.73 15 10 H 0.05 2.76 7.57 -2.91 -0.02 2.73 15 11 C -0.03 -1.87 5.44 84.65 0.46 -1.41 15 12 N -0.94 -58.26 13.62 21.45 0.29 -57.96 15 13 Si 1.11 50.95 29.91 68.60 2.05 53.01 15 14 H -0.29 -13.05 7.11 99.48 0.71 -12.34 15 15 H -0.27 -11.58 7.11 99.48 0.71 -10.87 15 16 H -0.27 -11.51 7.11 99.48 0.71 -10.81 15 17 H 0.06 2.53 7.02 -2.39 -0.02 2.51 15 18 H 0.08 2.65 7.98 -2.39 -0.02 2.63 15 19 H 0.00 -0.21 8.12 -2.39 -0.02 -0.23 15 20 H 0.01 0.35 8.14 -2.39 -0.02 0.33 15 21 H 0.09 2.66 8.01 -2.39 -0.02 2.64 15 22 H 0.09 2.25 8.14 -2.39 -0.02 2.23 15 23 H 0.07 2.17 8.14 -2.39 -0.02 2.15 15 24 H 0.04 1.63 8.14 -2.38 -0.02 1.61 15 25 H 0.07 2.38 8.14 -2.39 -0.02 2.36 15 26 H 0.05 2.33 8.14 -2.39 -0.02 2.31 15 27 H 0.03 1.41 8.03 -2.38 -0.02 1.39 15 28 H 0.25 16.11 6.59 -92.71 -0.61 15.50 15 Total: -1.00 -64.85 224.56 2.21 -62.64 By element: Atomic # 1 Polarization: 0.87 SS G_CDS: 1.26 Total: 2.13 kcal Atomic # 6 Polarization: -33.83 SS G_CDS: 2.88 Total: -30.95 kcal Atomic # 7 Polarization: -82.85 SS G_CDS: -3.98 Total: -86.83 kcal Atomic # 14 Polarization: 50.95 SS G_CDS: 2.05 Total: 53.01 kcal Total: -64.85 2.21 -62.64 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000036466145.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.383 kcal (2) G-P(sol) polarization free energy of solvation -64.849 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.466 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.212 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.637 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.253 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.10 seconds