Wall clock time and date at job start Mon Mar 30 2020 02:13:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46904 * 1 3 3 C 1.46896 * 110.99970 * 2 1 4 4 C 1.52998 * 109.47026 * 66.05184 * 3 2 1 5 5 C 1.50706 * 109.47348 * 179.97438 * 4 3 2 6 6 H 1.08000 * 119.99302 * 359.97438 * 5 4 3 7 7 C 1.37871 * 120.00436 * 179.72505 * 5 4 3 8 8 N 1.31515 * 119.99684 * 359.97438 * 7 5 4 9 9 Si 1.86800 * 120.00405 * 180.02562 * 7 5 4 10 10 H 1.48497 * 109.47050 * 59.99579 * 9 7 5 11 11 H 1.48496 * 109.47289 * 179.97438 * 9 7 5 12 12 H 1.48504 * 109.46492 * 299.99554 * 9 7 5 13 13 C 1.46898 * 110.99485 * 236.04894 * 2 1 3 14 14 C 1.53001 * 117.50381 * 7.70050 * 13 2 1 15 15 C 1.53005 * 117.50241 * 299.03941 * 13 2 1 16 16 H 1.08999 * 109.47067 * 59.99300 * 1 2 3 17 17 H 1.08992 * 109.47258 * 180.02562 * 1 2 3 18 18 H 1.09010 * 109.46685 * 299.99963 * 1 2 3 19 19 H 1.09000 * 109.47613 * 306.05109 * 3 2 1 20 20 H 1.09002 * 109.46818 * 186.04615 * 3 2 1 21 21 H 1.09001 * 109.47671 * 59.99839 * 4 3 2 22 22 H 1.08998 * 109.47454 * 299.99836 * 4 3 2 23 23 H 0.97004 * 120.00247 * 180.02562 * 8 7 5 24 24 H 1.09003 * 115.54773 * 153.37287 * 13 2 1 25 25 H 1.09008 * 117.49475 * 0.02562 * 14 13 2 26 26 H 1.08993 * 117.50155 * 145.01456 * 14 13 2 27 27 H 1.08995 * 117.50288 * 214.98284 * 15 13 2 28 28 H 1.09000 * 117.49184 * 359.97438 * 15 13 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 1.6316 2.0573 1.3183 5 6 2.1722 3.4641 1.3186 6 1 2.7208 3.8319 0.4641 7 6 1.9620 4.2832 2.4076 8 7 1.2892 3.8370 3.4458 9 14 2.6314 6.0271 2.4077 10 1 2.0447 6.7826 1.2718 11 1 2.2721 6.6952 3.6842 12 1 4.1093 5.9899 2.2668 13 6 1.9954 -0.7659 -1.1376 14 6 0.9929 -1.2526 -2.1861 15 6 1.6335 -2.2504 -1.2180 16 1 -0.3633 0.5139 -0.8899 17 1 -0.3633 -1.0276 0.0005 18 1 -0.3633 0.5139 0.8901 19 1 1.5611 1.9274 -0.8308 20 1 3.0797 1.3443 -0.1082 21 1 2.0659 1.5014 2.1492 22 1 0.5473 2.0844 1.4267 23 1 1.1410 4.4134 4.2118 24 1 2.9846 -0.4695 -1.4866 25 1 -0.0572 -1.0040 -2.0319 26 1 1.3227 -1.2766 -3.2247 27 1 2.3843 -2.9305 -1.6200 28 1 1.0052 -2.6587 -0.4263 RHF calculation, no. of doubly occupied orbitals= 32 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000037081114.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:13:46 Heat of formation + Delta-G solvation = 3.219767 kcal Electronic energy + Delta-G solvation = -9643.838130 eV Core-core repulsion = 7887.703592 eV Total energy + Delta-G solvation = -1756.134538 eV No. of doubly occupied orbitals = 32 Molecular weight (most abundant/longest-lived isotopes) = 169.116 amu Computer time = 0.11 seconds Orbital eigenvalues (eV) -39.75522 -36.05249 -34.41831 -31.04927 -27.90027 -25.93966 -23.25837 -22.31404 -20.87459 -18.66973 -17.31557 -16.58455 -16.24435 -15.50702 -14.83852 -14.24366 -14.05030 -13.34043 -13.16563 -12.85135 -12.60543 -12.49209 -12.25667 -11.93885 -11.70458 -11.46998 -11.28374 -10.99752 -10.54029 -8.99429 -8.20082 -6.32028 1.40580 1.44221 1.52152 2.40369 2.82591 3.13179 3.22383 3.93666 4.07644 4.18187 4.28492 4.41747 4.66168 4.70341 4.78356 4.91015 4.93812 5.05729 5.13418 5.28030 5.45427 5.64291 5.78393 6.08345 6.30273 6.32015 6.84746 7.37210 8.92094 Molecular weight = 169.12amu Principal moments of inertia in cm(-1) A = 0.108398 B = 0.009454 C = 0.009096 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 258.246332 B = 2960.898359 C = 3077.537369 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 N -0.529 5.529 3 C 0.081 3.919 4 C 0.035 3.965 5 C -0.547 4.547 6 H 0.061 0.939 7 C 0.002 3.998 8 N -0.933 5.933 9 Si 0.969 3.031 10 H -0.266 1.266 11 H -0.282 1.282 12 H -0.266 1.266 13 C -0.005 4.005 14 C -0.210 4.210 15 C -0.161 4.161 16 H 0.031 0.969 17 H 0.082 0.918 18 H 0.050 0.950 19 H 0.022 0.978 20 H 0.064 0.936 21 H -0.009 1.009 22 H -0.005 1.005 23 H 0.264 0.736 24 H 0.117 0.883 25 H 0.096 0.904 26 H 0.108 0.892 27 H 0.115 0.885 28 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.039 -7.452 -9.396 11.992 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 N -0.251 5.251 3 C -0.047 4.047 4 C -0.003 4.003 5 C -0.586 4.586 6 H 0.079 0.921 7 C -0.196 4.196 8 N -0.573 5.573 9 Si 0.793 3.207 10 H -0.191 1.191 11 H -0.208 1.208 12 H -0.191 1.191 13 C -0.114 4.114 14 C -0.249 4.249 15 C -0.199 4.199 16 H 0.050 0.950 17 H 0.100 0.900 18 H 0.069 0.931 19 H 0.040 0.960 20 H 0.082 0.918 21 H 0.009 0.991 22 H 0.014 0.986 23 H 0.073 0.927 24 H 0.135 0.865 25 H 0.114 0.886 26 H 0.126 0.874 27 H 0.133 0.867 28 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges 0.135 -7.622 -8.781 11.628 hybrid contribution -0.138 1.270 -0.260 1.304 sum -0.003 -6.352 -9.040 11.049 Atomic orbital electron populations 1.22431 0.87435 1.01879 1.00314 1.61867 1.08288 1.14306 1.40616 1.22008 0.98762 0.86434 0.97459 1.18944 0.95109 0.93801 0.92437 1.21602 1.35488 0.98872 1.02614 0.92092 1.25982 0.95323 1.03389 0.94951 1.70108 1.41715 1.38406 1.07024 0.85453 0.79118 0.78610 0.77565 1.19105 1.20773 1.19056 1.22836 0.99127 0.96494 0.92914 1.23577 0.99358 1.05235 0.96748 1.23113 1.03728 0.91567 1.01514 0.95043 0.89967 0.93069 0.95988 0.91776 0.99069 0.98646 0.92704 0.86510 0.88561 0.87365 0.86656 0.89101 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.95 7.95 127.69 1.02 1.97 15 2 N -0.53 -20.22 4.97 -897.03 -4.46 -24.68 15 3 C 0.08 3.57 4.87 86.30 0.42 3.99 15 4 C 0.03 1.91 4.90 29.85 0.15 2.05 15 5 C -0.55 -31.93 9.11 25.60 0.23 -31.70 15 6 H 0.06 3.38 7.74 -2.91 -0.02 3.36 15 7 C 0.00 0.09 5.46 84.65 0.46 0.55 15 8 N -0.93 -57.87 13.29 21.45 0.28 -57.59 15 9 Si 0.97 44.69 29.54 68.60 2.03 46.71 15 10 H -0.27 -11.74 7.11 99.48 0.71 -11.03 15 11 H -0.28 -12.71 7.11 99.48 0.71 -12.01 15 12 H -0.27 -11.74 7.11 99.48 0.71 -11.03 15 13 C 0.00 -0.14 6.11 44.92 0.27 0.14 15 14 C -0.21 -5.00 9.51 30.62 0.29 -4.71 15 15 C -0.16 -3.82 9.99 30.62 0.31 -3.51 15 16 H 0.03 1.03 7.23 -2.39 -0.02 1.02 15 17 H 0.08 2.40 6.63 -2.39 -0.02 2.39 15 18 H 0.05 2.05 6.47 -2.38 -0.02 2.03 15 19 H 0.02 0.96 8.12 -2.39 -0.02 0.94 15 20 H 0.06 2.76 7.96 -2.39 -0.02 2.74 15 21 H -0.01 -0.56 8.14 -2.39 -0.02 -0.58 15 22 H 0.00 -0.28 6.55 -2.39 -0.02 -0.30 15 23 H 0.26 15.36 8.31 -92.71 -0.77 14.59 15 24 H 0.12 3.34 7.93 -2.39 -0.02 3.32 15 25 H 0.10 2.34 5.90 -2.38 -0.01 2.32 15 26 H 0.11 2.15 8.14 -2.39 -0.02 2.13 15 27 H 0.12 2.19 8.14 -2.39 -0.02 2.17 15 28 H 0.09 2.22 7.56 -2.39 -0.02 2.20 15 Total: -1.00 -64.61 231.84 2.12 -62.50 By element: Atomic # 1 Polarization: 3.16 SS G_CDS: 1.12 Total: 4.28 kcal Atomic # 6 Polarization: -34.37 SS G_CDS: 3.15 Total: -31.22 kcal Atomic # 7 Polarization: -78.09 SS G_CDS: -4.17 Total: -82.27 kcal Atomic # 14 Polarization: 44.69 SS G_CDS: 2.03 Total: 46.71 kcal Total: -64.61 2.12 -62.50 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000037081114.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.717 kcal (2) G-P(sol) polarization free energy of solvation -64.613 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.103 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.116 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.497 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.220 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.12 seconds