Wall clock time and date at job start Mon Mar 30 2020 01:45:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31625 * 1 3 3 Si 1.86801 * 119.99789 * 2 1 4 4 H 1.48501 * 109.46896 * 270.00217 * 3 2 1 5 5 H 1.48501 * 109.47275 * 30.00256 * 3 2 1 6 6 H 1.48499 * 109.47039 * 150.00056 * 3 2 1 7 7 C 1.38805 * 120.00056 * 179.97438 * 2 1 3 8 8 H 1.08004 * 120.00292 * 359.97438 * 7 2 1 9 9 N 1.36939 * 119.99849 * 179.97438 * 7 2 1 10 10 C 1.46506 * 120.00073 * 180.02562 * 9 7 2 11 11 C 1.52998 * 109.47237 * 179.72302 * 10 9 7 12 12 C 1.54258 * 110.03455 * 292.90744 * 11 10 9 13 13 C 1.54967 * 104.16246 * 217.13741 * 12 11 10 14 14 C 1.54887 * 102.77367 * 37.88475 * 13 12 11 15 15 C 1.53874 * 110.03277 * 175.68586 * 11 10 9 16 16 H 0.97000 * 119.99835 * 359.97438 * 1 2 3 17 17 H 0.97005 * 120.00057 * 359.72558 * 9 7 2 18 18 H 1.09001 * 109.46512 * 299.72672 * 10 9 7 19 19 H 1.08998 * 109.47174 * 59.71793 * 10 9 7 20 20 H 1.09006 * 110.01511 * 54.29951 * 11 10 9 21 21 H 1.09005 * 110.48463 * 335.78619 * 12 11 10 22 22 H 1.09006 * 110.48910 * 98.42335 * 12 11 10 23 23 H 1.09007 * 110.71710 * 279.57479 * 13 12 11 24 24 H 1.09001 * 110.92470 * 156.29521 * 13 12 11 25 25 H 1.09006 * 110.48348 * 203.40513 * 14 13 12 26 26 H 1.08996 * 110.59816 * 80.82043 * 14 13 12 27 27 H 1.09001 * 110.03624 * 238.57082 * 15 11 10 28 28 H 1.09006 * 110.03109 * 359.95719 * 15 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4976 2.0464 -1.4001 5 1 1.4477 2.6527 0.7001 6 1 3.5477 1.4402 0.7000 7 6 2.0103 -1.2021 0.0005 8 1 1.4703 -2.1374 0.0014 9 7 3.3797 -1.2020 0.0000 10 6 4.1123 -2.4708 0.0000 11 6 5.6165 -2.1912 -0.0076 12 6 6.0268 -1.5435 -1.3462 13 6 7.4161 -2.1572 -1.6541 14 6 7.2572 -3.6218 -1.1759 15 6 6.3987 -3.5118 0.1010 16 1 -0.4850 0.8401 0.0004 17 1 3.8647 -0.3619 -0.0048 18 1 3.8529 -3.0399 0.8927 19 1 3.8449 -3.0447 -0.8872 20 1 5.8778 -1.5332 0.8212 21 1 5.3138 -1.8016 -2.1292 22 1 6.1021 -0.4613 -1.2392 23 1 8.1964 -1.6484 -1.0880 24 1 7.6297 -2.1206 -2.7224 25 1 8.2303 -4.0554 -0.9452 26 1 6.7441 -4.2180 -1.9304 27 1 7.0403 -3.4944 0.9820 28 1 5.7066 -4.3519 0.1600 RHF calculation, no. of doubly occupied orbitals= 32 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000037258584.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:45:07 Heat of formation + Delta-G solvation = -30.882525 kcal Electronic energy + Delta-G solvation = -9782.201659 eV Core-core repulsion = 8024.588335 eV Total energy + Delta-G solvation = -1757.613324 eV No. of doubly occupied orbitals = 32 Molecular weight (most abundant/longest-lived isotopes) = 169.116 amu Computer time = 0.12 seconds Orbital eigenvalues (eV) -39.39588 -36.28757 -33.54722 -30.52145 -29.49020 -26.25378 -23.67200 -21.43252 -20.83066 -19.47140 -17.02874 -16.36800 -16.13304 -15.29236 -14.94571 -14.57637 -14.12249 -13.67839 -13.29730 -12.85585 -12.23350 -11.95897 -11.90949 -11.83535 -11.79094 -11.59707 -11.42801 -11.25571 -10.96552 -9.31833 -8.05655 -5.39131 1.35103 1.39104 1.46702 2.46163 3.25426 3.54984 3.78873 3.85584 3.99479 4.48237 4.58414 4.64368 4.67383 4.78360 4.90104 4.98932 5.05390 5.14621 5.20601 5.29395 5.43613 5.53790 5.56213 5.72711 6.19055 7.05270 7.81928 8.02490 9.16220 Molecular weight = 169.12amu Principal moments of inertia in cm(-1) A = 0.076640 B = 0.012059 C = 0.010991 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 365.254857 B = 2321.357421 C = 2546.865960 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.984 5.984 2 C -0.064 4.064 3 Si 0.957 3.043 4 H -0.275 1.275 5 H -0.292 1.292 6 H -0.253 1.253 7 C -0.241 4.241 8 H 0.054 0.946 9 N -0.758 5.758 10 C 0.160 3.840 11 C -0.100 4.100 12 C -0.122 4.122 13 C -0.118 4.118 14 C -0.120 4.120 15 C -0.114 4.114 16 H 0.259 0.741 17 H 0.366 0.634 18 H 0.019 0.981 19 H 0.020 0.980 20 H 0.068 0.932 21 H 0.052 0.948 22 H 0.056 0.944 23 H 0.075 0.925 24 H 0.073 0.927 25 H 0.082 0.918 26 H 0.062 0.938 27 H 0.076 0.924 28 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.189 -3.848 -1.757 17.702 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.635 5.635 2 C -0.256 4.256 3 Si 0.784 3.216 4 H -0.201 1.201 5 H -0.218 1.218 6 H -0.178 1.178 7 C -0.371 4.371 8 H 0.072 0.928 9 N -0.404 5.404 10 C 0.034 3.966 11 C -0.119 4.119 12 C -0.160 4.160 13 C -0.156 4.156 14 C -0.157 4.157 15 C -0.152 4.152 16 H 0.068 0.932 17 H 0.199 0.801 18 H 0.037 0.963 19 H 0.038 0.962 20 H 0.086 0.914 21 H 0.071 0.929 22 H 0.075 0.925 23 H 0.094 0.906 24 H 0.091 0.909 25 H 0.101 0.899 26 H 0.081 0.919 27 H 0.095 0.905 28 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 16.991 -3.970 -1.745 17.535 hybrid contribution -0.429 1.011 0.062 1.100 sum 16.562 -2.959 -1.684 16.908 Atomic orbital electron populations 1.69894 1.07162 1.26820 1.59625 1.25546 0.96190 1.01390 1.02437 0.85372 0.78599 0.79339 0.78298 1.20131 1.21831 1.17773 1.19088 0.82904 0.93537 1.41617 0.92834 1.42747 1.02424 1.04312 1.90896 1.20961 0.90989 0.87125 0.97530 1.21966 0.93249 0.98281 0.98368 1.22430 0.97679 0.99468 0.96384 1.22502 0.95816 0.95858 1.01383 1.22348 1.00060 0.96666 0.96641 1.22129 0.98189 0.95709 0.99202 0.93212 0.80082 0.96342 0.96194 0.91381 0.92881 0.92519 0.90637 0.90851 0.89891 0.91886 0.90513 0.91917 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.98 -64.77 13.97 21.65 0.30 -64.47 15 2 C -0.06 -3.92 5.50 84.86 0.47 -3.45 15 3 Si 0.96 46.69 27.73 68.60 1.90 48.59 15 4 H -0.28 -13.00 7.11 99.48 0.71 -12.29 15 5 H -0.29 -14.23 7.11 99.48 0.71 -13.52 15 6 H -0.25 -11.21 6.52 99.48 0.65 -10.56 15 7 C -0.24 -14.43 10.47 84.03 0.88 -13.54 15 8 H 0.05 3.51 8.06 -2.91 -0.02 3.49 15 9 N -0.76 -37.52 5.24 -343.44 -1.80 -39.32 15 10 C 0.16 6.48 5.31 86.38 0.46 6.94 15 11 C -0.10 -3.07 2.97 -10.07 -0.03 -3.10 15 12 C -0.12 -3.52 6.05 31.69 0.19 -3.32 15 13 C -0.12 -2.51 6.91 31.91 0.22 -2.29 15 14 C -0.12 -2.41 6.83 31.67 0.22 -2.19 15 15 C -0.11 -2.73 6.46 31.32 0.20 -2.53 15 16 H 0.26 16.12 8.31 -92.71 -0.77 15.35 15 17 H 0.37 17.17 5.39 -92.70 -0.50 16.67 15 18 H 0.02 0.77 8.14 -2.39 -0.02 0.75 15 19 H 0.02 0.84 8.02 -2.39 -0.02 0.82 15 20 H 0.07 2.11 8.14 -2.38 -0.02 2.09 15 21 H 0.05 1.71 7.77 -2.38 -0.02 1.69 15 22 H 0.06 1.65 8.14 -2.38 -0.02 1.63 15 23 H 0.07 1.43 8.14 -2.38 -0.02 1.41 15 24 H 0.07 1.40 8.14 -2.39 -0.02 1.38 15 25 H 0.08 1.32 8.14 -2.38 -0.02 1.30 15 26 H 0.06 1.29 8.14 -2.39 -0.02 1.27 15 27 H 0.08 1.59 8.14 -2.39 -0.02 1.57 15 28 H 0.06 1.54 7.67 -2.38 -0.02 1.52 15 Total: -1.00 -67.70 228.55 3.57 -64.13 By element: Atomic # 1 Polarization: 14.00 SS G_CDS: 0.56 Total: 14.56 kcal Atomic # 6 Polarization: -26.09 SS G_CDS: 2.61 Total: -23.49 kcal Atomic # 7 Polarization: -102.29 SS G_CDS: -1.50 Total: -103.79 kcal Atomic # 14 Polarization: 46.69 SS G_CDS: 1.90 Total: 48.59 kcal Total: -67.70 3.57 -64.13 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000037258584.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.248 kcal (2) G-P(sol) polarization free energy of solvation -67.699 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.451 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.568 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.131 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.883 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.12 seconds