Wall clock time and date at job start Mon Mar 30 2020 01:40:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08997 * 115.56263 * 2 1 4 4 C 1.53070 * 117.49161 * 145.70535 * 2 1 3 5 5 C 1.52996 * 59.98460 * 107.48638 * 4 2 1 6 6 H 1.08999 * 117.50631 * 252.49606 * 5 4 2 7 7 C 1.50700 * 117.49770 * 107.49769 * 5 4 2 8 8 O 1.21293 * 120.00282 * 291.25504 * 7 5 4 9 9 N 1.34777 * 120.00075 * 111.25401 * 7 5 4 10 10 C 1.37104 * 120.00173 * 180.02562 * 9 7 5 11 11 H 1.08002 * 119.99666 * 359.97438 * 10 9 7 12 12 C 1.38945 * 120.00001 * 180.27893 * 10 9 7 13 13 N 1.31414 * 119.99893 * 359.72318 * 12 10 9 14 14 Si 1.86801 * 119.99957 * 179.72309 * 12 10 9 15 15 H 1.48501 * 109.46896 * 89.99808 * 14 12 10 16 16 H 1.48504 * 109.46757 * 209.99794 * 14 12 10 17 17 H 1.48492 * 109.47185 * 329.99590 * 14 12 10 18 18 H 1.08994 * 109.47383 * 205.68712 * 1 2 3 19 19 H 1.08996 * 109.47464 * 325.69313 * 1 2 3 20 20 H 1.09009 * 109.46932 * 85.69078 * 1 2 3 21 21 H 1.09005 * 117.49604 * 0.02562 * 4 2 1 22 22 H 1.09000 * 117.53672 * 214.95782 * 4 2 1 23 23 H 0.97000 * 120.00140 * 0.02562 * 9 7 5 24 24 H 0.97004 * 119.99542 * 180.02562 * 13 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 2.0003 0.9833 0.0000 4 6 2.2366 -1.1218 0.7651 5 6 2.2365 -1.1210 -0.7649 6 1 1.6113 -1.8583 -1.2686 7 6 3.5293 -0.7812 -1.4607 8 8 3.9711 0.3469 -1.4024 9 7 4.1947 -1.7308 -2.1477 10 6 5.3712 -1.4217 -2.7803 11 1 5.7645 -0.4172 -2.7284 12 6 6.0542 -2.3993 -3.4933 13 7 5.5753 -3.6214 -3.5569 14 14 7.6531 -1.9763 -4.3616 15 1 8.7934 -2.2049 -3.4382 16 1 7.8075 -2.8374 -5.5616 17 1 7.6295 -0.5504 -4.7754 18 1 -0.3634 -0.9260 0.4454 19 1 -0.3634 0.8488 0.5792 20 1 -0.3633 0.0772 -1.0249 21 1 1.6112 -1.8596 1.2678 22 1 3.1719 -0.8770 1.2684 23 1 3.8413 -2.6329 -2.1946 24 1 6.0524 -4.3039 -4.0544 RHF calculation, no. of doubly occupied orbitals= 31 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000037714203.mol2 24 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:40:28 Heat of formation + Delta-G solvation = -48.956216 kcal Electronic energy + Delta-G solvation = -9394.611366 eV Core-core repulsion = 7500.381213 eV Total energy + Delta-G solvation = -1894.230153 eV No. of doubly occupied orbitals = 31 Molecular weight (most abundant/longest-lived isotopes) = 169.084 amu Computer time = 0.11 seconds Orbital eigenvalues (eV) -40.52480 -37.68681 -35.92158 -33.29111 -29.62554 -27.36895 -24.38333 -21.72606 -20.70957 -19.81191 -18.05235 -16.78126 -15.95017 -15.64663 -15.26723 -14.63666 -14.05318 -13.59111 -13.50022 -12.97609 -12.81402 -12.47852 -12.24963 -12.13350 -11.59275 -11.17436 -10.87750 -10.39968 -10.07576 -8.51209 -6.01129 1.34716 1.39350 1.52989 1.87991 2.27123 2.86129 3.11614 3.26819 3.92176 4.00922 4.14513 4.45964 4.50444 4.81530 4.92576 4.99131 5.13235 5.24687 5.36236 5.49483 5.95207 6.53679 7.06084 7.50503 8.05852 8.66277 Molecular weight = 169.08amu Principal moments of inertia in cm(-1) A = 0.106645 B = 0.010814 C = 0.010299 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 262.489611 B = 2588.589607 C = 2717.981433 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C -0.125 4.125 3 H 0.086 0.914 4 C -0.139 4.139 5 C -0.190 4.190 6 H 0.133 0.867 7 C 0.460 3.540 8 O -0.642 6.642 9 N -0.566 5.566 10 C -0.342 4.342 11 H 0.078 0.922 12 C -0.012 4.012 13 N -0.918 5.918 14 Si 0.997 3.003 15 H -0.269 1.269 16 H -0.267 1.267 17 H -0.273 1.273 18 H 0.076 0.924 19 H 0.076 0.924 20 H 0.059 0.941 21 H 0.135 0.865 22 H 0.078 0.922 23 H 0.397 0.603 24 H 0.280 0.720 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.167 0.228 4.802 8.629 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.144 4.144 3 H 0.104 0.896 4 C -0.177 4.177 5 C -0.211 4.211 6 H 0.150 0.850 7 C 0.248 3.752 8 O -0.531 6.531 9 N -0.200 5.200 10 C -0.471 4.471 11 H 0.096 0.904 12 C -0.212 4.212 13 N -0.558 5.558 14 Si 0.820 3.180 15 H -0.194 1.194 16 H -0.192 1.192 17 H -0.198 1.198 18 H 0.095 0.905 19 H 0.095 0.905 20 H 0.078 0.922 21 H 0.153 0.847 22 H 0.096 0.904 23 H 0.231 0.769 24 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -6.800 0.770 4.722 8.314 hybrid contribution 0.856 -0.313 -0.635 1.111 sum -5.944 0.458 4.087 7.228 Atomic orbital electron populations 1.21374 0.89553 1.03527 1.02462 1.22388 0.96810 0.93687 1.01537 0.89614 1.23158 1.02493 1.01685 0.90342 1.22179 0.96665 1.05874 0.96358 0.84956 1.20119 0.87272 0.84854 0.82932 1.90452 1.71811 1.23361 1.67469 1.41911 1.21161 1.11670 1.45290 1.19726 1.00119 0.97696 1.29575 0.90405 1.26122 1.02864 0.94503 0.97707 1.69683 1.41266 1.02563 1.42329 0.84879 0.77018 0.78223 0.77897 1.19384 1.19155 1.19785 0.90496 0.90500 0.92153 0.84687 0.90359 0.76861 0.91082 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.48 10.19 71.98 0.73 -1.74 14 2 C -0.13 -3.98 5.92 -10.77 -0.06 -4.04 14 3 H 0.09 3.19 7.67 -2.39 -0.02 3.18 14 4 C -0.14 -4.24 9.88 30.62 0.30 -3.94 14 5 C -0.19 -7.10 5.91 -11.54 -0.07 -7.17 14 6 H 0.13 4.29 8.14 -2.39 -0.02 4.27 14 7 C 0.46 23.68 7.57 87.66 0.66 24.34 14 8 O -0.64 -38.15 15.83 -3.07 -0.05 -38.20 14 9 N -0.57 -30.87 5.29 -306.98 -1.62 -32.49 14 10 C -0.34 -20.24 9.68 84.04 0.81 -19.42 14 11 H 0.08 4.90 7.16 -2.91 -0.02 4.88 14 12 C -0.01 -0.65 5.50 84.92 0.47 -0.18 14 13 N -0.92 -50.62 13.05 21.66 0.28 -50.34 14 14 Si 1.00 43.65 29.55 68.60 2.03 45.68 14 15 H -0.27 -11.34 7.11 99.48 0.71 -10.64 14 16 H -0.27 -10.95 7.11 99.48 0.71 -10.24 14 17 H -0.27 -12.03 7.11 99.48 0.71 -11.33 14 18 H 0.08 1.38 7.90 -2.39 -0.02 1.36 14 19 H 0.08 1.43 8.14 -2.39 -0.02 1.42 14 20 H 0.06 1.34 8.14 -2.38 -0.02 1.32 14 21 H 0.14 3.02 8.05 -2.38 -0.02 3.00 14 22 H 0.08 2.64 8.14 -2.39 -0.02 2.62 14 23 H 0.40 20.58 7.90 -92.71 -0.73 19.85 14 24 H 0.28 14.31 8.31 -92.71 -0.77 13.54 14 Total: -1.00 -68.25 219.24 3.95 -64.30 By element: Atomic # 1 Polarization: 22.75 SS G_CDS: 0.46 Total: 23.21 kcal Atomic # 6 Polarization: -15.00 SS G_CDS: 2.85 Total: -12.16 kcal Atomic # 7 Polarization: -81.49 SS G_CDS: -1.34 Total: -82.83 kcal Atomic # 8 Polarization: -38.15 SS G_CDS: -0.05 Total: -38.20 kcal Atomic # 14 Polarization: 43.65 SS G_CDS: 2.03 Total: 45.68 kcal Total: -68.25 3.95 -64.30 kcal The number of atoms in the molecule is 24 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000037714203.mol2 24 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.340 kcal (2) G-P(sol) polarization free energy of solvation -68.246 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.906 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.950 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.296 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.956 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.11 seconds