Wall clock time and date at job start Mon Mar 30 2020 01:40:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09007 * 115.56121 * 2 1 4 4 C 1.53000 * 117.50436 * 214.31283 * 2 1 3 5 5 C 1.52992 * 117.50170 * 145.68666 * 2 1 3 6 6 H 1.09001 * 117.49911 * 359.97438 * 5 2 1 7 7 C 1.50703 * 117.50304 * 214.98254 * 5 2 1 8 8 O 1.21293 * 119.99482 * 359.97438 * 7 5 2 9 9 N 1.34777 * 120.00290 * 180.02562 * 7 5 2 10 10 C 1.37092 * 119.99729 * 180.27555 * 9 7 5 11 11 H 1.08002 * 120.00496 * 359.72414 * 10 9 7 12 12 C 1.38958 * 120.00096 * 179.72242 * 10 9 7 13 13 N 1.31406 * 120.00295 * 180.02562 * 12 10 9 14 14 Si 1.86800 * 119.99484 * 359.97438 * 12 10 9 15 15 H 1.48500 * 109.47210 * 90.00351 * 14 12 10 16 16 H 1.48506 * 109.47251 * 210.00025 * 14 12 10 17 17 H 1.48504 * 109.47424 * 330.00119 * 14 12 10 18 18 H 1.08994 * 109.47208 * 274.30670 * 1 2 3 19 19 H 1.08997 * 109.47350 * 34.31670 * 1 2 3 20 20 H 1.09000 * 109.46581 * 154.30936 * 1 2 3 21 21 H 1.08998 * 117.50074 * 145.01841 * 4 2 1 22 22 H 1.09004 * 117.49200 * 359.97438 * 4 2 1 23 23 H 0.97001 * 119.99727 * 359.97438 * 9 7 5 24 24 H 0.97004 * 119.99848 * 179.97438 * 13 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 2.0004 0.9834 0.0000 4 6 2.2366 -1.1209 -0.7650 5 6 2.2365 -1.1209 0.7650 6 1 1.6113 -1.8581 1.2687 7 6 3.5293 -0.7810 1.4609 8 8 3.9720 0.3467 1.4008 9 7 4.1941 -1.7302 2.1490 10 6 5.3672 -1.4195 2.7867 11 1 5.7610 -0.4153 2.7340 12 6 6.0497 -2.3967 3.5010 13 7 7.1739 -2.0989 4.1127 14 14 5.3681 -4.1335 3.5928 15 1 5.9043 -4.9360 2.4642 16 1 5.7720 -4.7565 4.8790 17 1 3.8861 -4.0889 3.5084 18 1 -0.3633 0.0772 1.0247 19 1 -0.3634 0.8487 -0.5793 20 1 -0.3632 -0.9261 -0.4455 21 1 3.1717 -0.8750 -1.2683 22 1 1.6113 -1.8586 -1.2680 23 1 3.8402 -2.6321 2.1967 24 1 7.6500 -2.7810 4.6116 RHF calculation, no. of doubly occupied orbitals= 31 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000037714204.mol2 24 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:40:29 Heat of formation + Delta-G solvation = -44.156492 kcal Electronic energy + Delta-G solvation = -9433.089457 eV Core-core repulsion = 7539.067436 eV Total energy + Delta-G solvation = -1894.022021 eV No. of doubly occupied orbitals = 31 Molecular weight (most abundant/longest-lived isotopes) = 169.084 amu Computer time = 0.10 seconds Orbital eigenvalues (eV) -40.65717 -37.74665 -35.97749 -33.78619 -29.67479 -27.41337 -24.20503 -21.69837 -21.15198 -20.00666 -18.01980 -16.97194 -15.82562 -15.76072 -14.98869 -14.75588 -14.37105 -13.95389 -13.59205 -13.03327 -12.83141 -12.46624 -12.23717 -12.00144 -11.59116 -11.20131 -10.89369 -10.48853 -10.30790 -8.46400 -6.08021 1.28276 1.32521 1.43066 1.77615 2.19976 2.75916 2.93579 3.19360 3.89306 3.94942 4.05366 4.39326 4.47718 4.80460 4.92658 5.00078 5.12938 5.26203 5.48285 5.52338 5.89139 6.53180 6.80932 7.33775 7.90128 8.71208 Molecular weight = 169.08amu Principal moments of inertia in cm(-1) A = 0.077960 B = 0.012533 C = 0.011385 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 359.071763 B = 2233.603086 C = 2458.731551 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C -0.129 4.129 3 H 0.082 0.918 4 C -0.137 4.137 5 C -0.190 4.190 6 H 0.145 0.855 7 C 0.471 3.529 8 O -0.633 6.633 9 N -0.583 5.583 10 C -0.337 4.337 11 H 0.053 0.947 12 C -0.013 4.013 13 N -0.931 5.931 14 Si 0.968 3.032 15 H -0.255 1.255 16 H -0.271 1.271 17 H -0.233 1.233 18 H 0.060 0.940 19 H 0.073 0.927 20 H 0.079 0.921 21 H 0.078 0.922 22 H 0.141 0.859 23 H 0.391 0.609 24 H 0.281 0.719 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.839 -5.775 -7.164 16.619 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.148 4.148 3 H 0.100 0.900 4 C -0.174 4.174 5 C -0.211 4.211 6 H 0.163 0.837 7 C 0.260 3.740 8 O -0.520 6.520 9 N -0.222 5.222 10 C -0.466 4.466 11 H 0.072 0.928 12 C -0.212 4.212 13 N -0.571 5.571 14 Si 0.787 3.213 15 H -0.179 1.179 16 H -0.196 1.196 17 H -0.156 1.156 18 H 0.079 0.921 19 H 0.092 0.908 20 H 0.098 0.902 21 H 0.096 0.904 22 H 0.159 0.841 23 H 0.227 0.773 24 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -13.353 -5.090 -7.061 15.939 hybrid contribution 0.629 -0.518 0.566 0.992 sum -12.724 -5.608 -6.494 15.347 Atomic orbital electron populations 1.21374 0.89416 1.03600 1.02518 1.22391 0.96929 0.93732 1.01723 0.89962 1.23193 1.02553 1.01617 0.90048 1.22233 0.96133 1.06259 0.96471 0.83728 1.20211 0.87071 0.84590 0.82164 1.90508 1.71433 1.23636 1.66432 1.41991 1.21531 1.11554 1.47127 1.19056 0.99540 0.98276 1.29706 0.92837 1.26164 0.95699 1.04365 0.94984 1.69800 1.17019 1.36951 1.33322 0.85327 0.80350 0.76261 0.79357 1.17915 1.19555 1.15647 0.92062 0.90784 0.90173 0.90373 0.84129 0.77295 0.90925 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.21 10.19 71.98 0.73 -1.48 14 2 C -0.13 -3.78 5.92 -10.80 -0.06 -3.84 14 3 H 0.08 2.95 7.67 -2.38 -0.02 2.93 14 4 C -0.14 -3.70 9.88 30.59 0.30 -3.40 14 5 C -0.19 -6.36 5.91 -11.54 -0.07 -6.43 14 6 H 0.15 3.83 8.14 -2.39 -0.02 3.81 14 7 C 0.47 23.01 7.57 87.66 0.66 23.68 14 8 O -0.63 -37.60 15.83 -3.07 -0.05 -37.65 14 9 N -0.58 -29.22 5.09 -306.98 -1.56 -30.78 14 10 C -0.34 -20.51 10.16 84.04 0.85 -19.66 14 11 H 0.05 3.86 7.39 -2.91 -0.02 3.84 14 12 C -0.01 -0.74 5.50 84.93 0.47 -0.27 14 13 N -0.93 -56.95 13.96 21.66 0.30 -56.64 14 14 Si 0.97 39.57 27.74 68.60 1.90 41.47 14 15 H -0.25 -9.83 7.11 99.48 0.71 -9.13 14 16 H -0.27 -10.83 7.11 99.48 0.71 -10.13 14 17 H -0.23 -8.13 6.52 99.48 0.65 -7.49 14 18 H 0.06 1.21 8.14 -2.39 -0.02 1.19 14 19 H 0.07 1.27 8.14 -2.39 -0.02 1.25 14 20 H 0.08 1.20 7.90 -2.39 -0.02 1.18 14 21 H 0.08 2.42 8.14 -2.39 -0.02 2.40 14 22 H 0.14 2.58 8.05 -2.38 -0.02 2.56 14 23 H 0.39 16.29 5.76 -92.71 -0.53 15.76 14 24 H 0.28 15.61 8.31 -92.71 -0.77 14.84 14 Total: -1.00 -76.08 216.11 4.08 -71.99 By element: Atomic # 1 Polarization: 22.41 SS G_CDS: 0.60 Total: 23.01 kcal Atomic # 6 Polarization: -14.29 SS G_CDS: 2.89 Total: -11.40 kcal Atomic # 7 Polarization: -86.16 SS G_CDS: -1.26 Total: -87.42 kcal Atomic # 8 Polarization: -37.60 SS G_CDS: -0.05 Total: -37.65 kcal Atomic # 14 Polarization: 39.57 SS G_CDS: 1.90 Total: 41.47 kcal Total: -76.08 4.08 -71.99 kcal The number of atoms in the molecule is 24 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000037714204.mol2 24 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.837 kcal (2) G-P(sol) polarization free energy of solvation -76.078 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.240 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.084 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.994 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.156 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.10 seconds