Wall clock time and date at job start Mon Mar 30 2020 01:57:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52995 * 109.47045 * 2 1 4 4 H 1.08995 * 109.87435 * 305.50135 * 3 2 1 5 5 C 1.54325 * 109.88015 * 184.32595 * 3 2 1 6 6 C 1.55159 * 102.94270 * 218.38763 * 5 3 2 7 7 C 1.54910 * 101.58052 * 35.50406 * 6 5 3 8 8 N 1.47026 * 109.88512 * 66.52185 * 3 2 1 9 9 C 1.36935 * 125.64316 * 298.38666 * 8 3 2 10 10 H 1.08001 * 120.00609 * 338.65390 * 9 8 3 11 11 C 1.38813 * 119.99869 * 158.65044 * 9 8 3 12 12 N 1.31617 * 120.00474 * 159.23612 * 11 9 8 13 13 Si 1.86802 * 119.99805 * 339.23857 * 11 9 8 14 14 H 1.48496 * 109.47182 * 84.79926 * 13 11 9 15 15 H 1.48500 * 109.47066 * 204.79934 * 13 11 9 16 16 H 1.48494 * 109.47198 * 324.79515 * 13 11 9 17 17 H 1.08997 * 109.47386 * 52.11899 * 1 2 3 18 18 H 1.08993 * 109.47545 * 172.12336 * 1 2 3 19 19 H 1.09011 * 109.46898 * 292.12461 * 1 2 3 20 20 H 1.09000 * 109.46587 * 120.00030 * 2 1 3 21 21 H 1.08994 * 109.46857 * 239.99785 * 2 1 3 22 22 H 1.09002 * 110.72295 * 336.75138 * 5 3 2 23 23 H 1.08998 * 110.72039 * 100.02351 * 5 3 2 24 24 H 1.08997 * 111.00769 * 277.42488 * 6 5 3 25 25 H 1.09006 * 111.03490 * 153.59068 * 6 5 3 26 26 H 1.09000 * 110.36588 * 204.14836 * 7 6 5 27 27 H 1.09000 * 110.36914 * 81.82749 * 7 6 5 28 28 H 0.97000 * 120.00715 * 180.02562 * 12 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6023 1.9902 -0.8345 5 6 3.5793 1.4549 -0.1095 6 6 3.9853 2.6189 0.8326 7 6 2.9292 2.4906 1.9586 8 7 1.6874 2.0975 1.2681 9 6 0.4159 2.3072 1.7314 10 1 -0.4162 2.3095 1.0430 11 6 0.1966 2.5169 3.0860 12 7 -0.9069 3.1096 3.4901 13 14 1.4677 1.9578 4.3354 14 1 2.5104 3.0047 4.4832 15 1 0.8068 1.7289 5.6454 16 1 2.0963 0.6951 3.8710 17 1 -0.3634 0.6310 -0.8111 18 1 -0.3634 -1.0179 -0.1408 19 1 -0.3633 0.3871 0.9521 20 1 1.8933 -0.5139 0.8900 21 1 1.8933 -0.5138 -0.8899 22 1 3.9985 0.5115 0.2404 23 1 3.8915 1.6606 -1.1333 24 1 3.9008 3.5799 0.3253 25 1 4.9925 2.4730 1.2232 26 1 2.7957 3.4469 2.4643 27 1 3.2264 1.7216 2.6717 28 1 -1.0601 3.2564 4.4366 RHF calculation, no. of doubly occupied orbitals= 32 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000037913730.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:57:45 Heat of formation + Delta-G solvation = -6.697483 kcal Electronic energy + Delta-G solvation = -10343.463188 eV Core-core repulsion = 8586.898606 eV Total energy + Delta-G solvation = -1756.564582 eV No. of doubly occupied orbitals = 32 Molecular weight (most abundant/longest-lived isotopes) = 169.116 amu Computer time = 0.11 seconds Orbital eigenvalues (eV) -39.68664 -34.61212 -33.94929 -31.74738 -28.71470 -26.31110 -23.82923 -22.10203 -20.78170 -18.83319 -17.28538 -16.92860 -15.32958 -15.00422 -14.74864 -14.27648 -14.03715 -13.73208 -13.05629 -12.94846 -12.80021 -12.45723 -12.11450 -11.88094 -11.62347 -11.42636 -11.34839 -11.08137 -10.69204 -8.94984 -8.12529 -5.37592 1.29545 1.37290 1.46046 2.44299 3.10945 3.37293 3.94118 3.98684 4.20330 4.33402 4.48381 4.61671 4.72883 4.76730 4.92730 5.00526 5.12856 5.17180 5.23516 5.27512 5.38095 5.63118 5.66924 5.83170 6.17551 6.85309 7.61738 8.20562 9.07784 Molecular weight = 169.12amu Principal moments of inertia in cm(-1) A = 0.043251 B = 0.023832 C = 0.018231 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 647.221723 B = 1174.621943 C = 1535.467267 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.120 4.120 3 C 0.144 3.856 4 H 0.036 0.964 5 C -0.116 4.116 6 C -0.121 4.121 7 C 0.098 3.902 8 N -0.623 5.623 9 C -0.206 4.206 10 H 0.066 0.934 11 C -0.044 4.044 12 N -0.962 5.962 13 Si 0.942 3.058 14 H -0.275 1.275 15 H -0.313 1.313 16 H -0.272 1.272 17 H 0.042 0.958 18 H 0.053 0.947 19 H 0.046 0.954 20 H 0.041 0.959 21 H 0.082 0.918 22 H 0.077 0.923 23 H 0.098 0.902 24 H 0.073 0.927 25 H 0.095 0.905 26 H 0.033 0.967 27 H 0.018 0.982 28 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.408 -4.683 -6.655 13.212 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.159 4.159 3 C 0.038 3.962 4 H 0.054 0.946 5 C -0.154 4.154 6 C -0.159 4.159 7 C -0.027 4.027 8 N -0.349 5.349 9 C -0.335 4.335 10 H 0.084 0.916 11 C -0.237 4.237 12 N -0.611 5.611 13 Si 0.772 3.228 14 H -0.201 1.201 15 H -0.242 1.242 16 H -0.198 1.198 17 H 0.061 0.939 18 H 0.072 0.928 19 H 0.065 0.935 20 H 0.060 0.940 21 H 0.100 0.900 22 H 0.096 0.904 23 H 0.116 0.884 24 H 0.092 0.908 25 H 0.113 0.887 26 H 0.052 0.948 27 H 0.035 0.965 28 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges 10.254 -4.623 -6.523 13.002 hybrid contribution -0.186 -0.083 1.151 1.169 sum 10.068 -4.706 -5.372 12.344 Atomic orbital electron populations 1.21854 0.96961 1.00206 1.01796 1.21860 0.95856 0.97387 1.00831 1.21379 0.95091 0.91976 0.87705 0.94564 1.22621 0.93109 0.98781 1.00875 1.22694 0.97918 0.99423 0.95845 1.22074 0.87802 0.96743 0.96047 1.45085 1.01006 1.67348 1.21417 1.18575 0.84116 1.39551 0.91269 0.91604 1.25623 0.98211 1.01312 0.98595 1.69941 1.29565 1.46243 1.15325 0.85984 0.79005 0.79503 0.78276 1.20148 1.24155 1.19766 0.93917 0.92769 0.93494 0.94022 0.90000 0.90403 0.88372 0.90797 0.88678 0.94839 0.96459 0.93231 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.85 8.96 71.98 0.65 -5.21 15 2 C -0.12 -4.25 5.46 30.59 0.17 -4.09 15 3 C 0.14 5.45 3.24 45.34 0.15 5.60 15 4 H 0.04 1.41 8.14 -2.39 -0.02 1.39 15 5 C -0.12 -3.30 6.48 31.78 0.21 -3.09 15 6 C -0.12 -3.70 7.09 31.99 0.23 -3.48 15 7 C 0.10 4.20 4.71 86.86 0.41 4.61 15 8 N -0.62 -29.91 2.91 -668.28 -1.94 -31.85 15 9 C -0.21 -11.84 8.04 84.03 0.68 -11.16 15 10 H 0.07 4.08 7.03 -2.91 -0.02 4.06 15 11 C -0.04 -2.65 5.44 84.86 0.46 -2.19 15 12 N -0.96 -62.08 13.97 21.65 0.30 -61.78 15 13 Si 0.94 48.61 24.28 68.60 1.67 50.28 15 14 H -0.28 -13.48 6.59 99.48 0.66 -12.83 15 15 H -0.31 -16.37 7.11 99.48 0.71 -15.67 15 16 H -0.27 -13.60 6.64 99.48 0.66 -12.94 15 17 H 0.04 1.60 8.13 -2.39 -0.02 1.58 15 18 H 0.05 1.79 8.14 -2.39 -0.02 1.77 15 19 H 0.05 2.24 5.43 -2.38 -0.01 2.23 15 20 H 0.04 1.57 8.14 -2.39 -0.02 1.55 15 21 H 0.08 2.28 8.14 -2.39 -0.02 2.26 15 22 H 0.08 2.03 7.85 -2.39 -0.02 2.01 15 23 H 0.10 2.18 8.14 -2.39 -0.02 2.16 15 24 H 0.07 2.18 8.14 -2.39 -0.02 2.16 15 25 H 0.09 2.33 8.14 -2.38 -0.02 2.31 15 26 H 0.03 1.56 6.87 -2.39 -0.02 1.55 15 27 H 0.02 0.78 5.46 -2.39 -0.01 0.77 15 28 H 0.26 15.97 8.31 -92.71 -0.77 15.20 15 Total: -1.00 -66.77 216.98 3.98 -62.79 By element: Atomic # 1 Polarization: -1.44 SS G_CDS: 1.02 Total: -0.43 kcal Atomic # 6 Polarization: -21.94 SS G_CDS: 2.94 Total: -19.01 kcal Atomic # 7 Polarization: -91.99 SS G_CDS: -1.64 Total: -93.63 kcal Atomic # 14 Polarization: 48.61 SS G_CDS: 1.67 Total: 50.28 kcal Total: -66.77 3.98 -62.79 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000037913730.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.093 kcal (2) G-P(sol) polarization free energy of solvation -66.769 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.677 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.979 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.790 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.697 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.11 seconds