Wall clock time and date at job start Mon Mar 30 2020 01:57:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53008 * 109.46781 * 2 1 4 4 H 1.08997 * 109.87038 * 54.24310 * 3 2 1 5 5 C 1.54331 * 110.00853 * 175.33686 * 3 2 1 6 6 C 1.55154 * 102.94031 * 141.68321 * 5 3 2 7 7 C 1.55135 * 101.48515 * 324.33126 * 6 5 3 8 8 N 1.47018 * 109.88219 * 293.22142 * 3 2 1 9 9 C 1.36939 * 125.64687 * 61.45245 * 8 3 2 10 10 H 1.07995 * 119.99901 * 31.62795 * 9 8 3 11 11 C 1.38812 * 119.99850 * 211.62507 * 9 8 3 12 12 N 1.31621 * 119.99807 * 189.02101 * 11 9 8 13 13 Si 1.86795 * 119.99937 * 9.02377 * 11 9 8 14 14 H 1.48510 * 109.46907 * 174.46214 * 13 11 9 15 15 H 1.48500 * 109.47321 * 294.45942 * 13 11 9 16 16 H 1.48502 * 109.47501 * 54.46325 * 13 11 9 17 17 H 1.09001 * 109.47418 * 308.30476 * 1 2 3 18 18 H 1.08997 * 109.47349 * 68.30768 * 1 2 3 19 19 H 1.09002 * 109.46869 * 188.30898 * 1 2 3 20 20 H 1.08995 * 109.47783 * 240.00105 * 2 1 3 21 21 H 1.09000 * 109.47345 * 119.99616 * 2 1 3 22 22 H 1.08999 * 110.71926 * 260.04835 * 5 3 2 23 23 H 1.08998 * 110.72107 * 23.14125 * 5 3 2 24 24 H 1.08997 * 111.00416 * 82.56824 * 6 5 3 25 25 H 1.08998 * 111.00395 * 206.38515 * 6 5 3 26 26 H 1.09002 * 110.49867 * 278.45455 * 7 6 5 27 27 H 1.09003 * 110.33967 * 156.05720 * 7 6 5 28 28 H 0.96998 * 119.99993 * 354.94901 * 12 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 1.5986 1.9915 0.8319 5 6 3.5786 1.4588 0.1179 6 6 3.9870 2.6229 -0.8230 7 6 2.9374 2.4861 -1.9572 8 7 1.6926 2.0957 -1.2705 9 6 0.4232 2.3018 -1.7410 10 1 -0.3888 2.4683 -1.0488 11 6 0.1802 2.2969 -3.1077 12 7 -0.9954 2.6685 -3.5685 13 14 1.5216 1.7628 -4.2929 14 1 0.9741 1.7180 -5.6726 15 1 2.6456 2.7318 -4.2377 16 1 2.0116 0.4140 -3.9107 17 1 -0.3634 0.6370 0.8064 18 1 -0.3634 0.3798 -0.9548 19 1 -0.3633 -1.0169 0.1485 20 1 1.8934 -0.5138 -0.8899 21 1 1.8933 -0.5138 0.8900 22 1 3.8846 1.6661 1.1433 23 1 4.0017 0.5149 -0.2259 24 1 3.8972 3.5841 -0.3169 25 1 4.9967 2.4788 -1.2073 26 1 3.2386 1.7137 -2.6649 27 1 2.8055 3.4397 -2.4684 28 1 -1.7147 2.8754 -2.9516 RHF calculation, no. of doubly occupied orbitals= 32 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000037913731.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:57:46 Heat of formation + Delta-G solvation = 9.093493 kcal Electronic energy + Delta-G solvation = -10368.297728 eV Core-core repulsion = 8612.417894 eV Total energy + Delta-G solvation = -1755.879834 eV No. of doubly occupied orbitals = 32 Molecular weight (most abundant/longest-lived isotopes) = 169.116 amu Computer time = 0.11 seconds Orbital eigenvalues (eV) -37.98635 -32.64859 -32.35193 -29.70766 -27.10043 -24.02457 -21.92447 -20.63552 -18.95934 -17.35892 -15.48808 -14.98123 -13.53633 -13.36373 -13.01722 -12.59697 -12.34642 -11.62919 -11.57408 -11.17148 -11.03851 -10.50292 -10.30748 -10.05492 -9.86871 -9.80417 -9.37866 -8.96190 -8.44576 -6.92974 -6.16521 -3.29867 3.47201 3.55007 3.74289 4.64916 5.11335 5.32008 5.44551 5.54989 5.65960 5.93717 6.02648 6.14199 6.20055 6.26838 6.35687 6.53391 6.64563 6.70672 6.76354 6.83978 6.88527 7.17862 7.40514 8.01742 8.44334 9.10539 9.62363 10.38992 11.21899 Molecular weight = 169.12amu Principal moments of inertia in cm(-1) A = 0.042505 B = 0.024649 C = 0.018535 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 658.594396 B = 1135.681516 C = 1510.320493 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.122 4.122 3 C 0.155 3.845 4 H 0.035 0.965 5 C -0.128 4.128 6 C -0.133 4.133 7 C 0.112 3.888 8 N -0.605 5.605 9 C -0.310 4.310 10 H 0.069 0.931 11 C -0.017 4.017 12 N -0.929 5.929 13 Si 1.069 2.931 14 H -0.301 1.301 15 H -0.286 1.286 16 H -0.293 1.293 17 H 0.037 0.963 18 H 0.090 0.910 19 H 0.028 0.972 20 H 0.053 0.947 21 H 0.039 0.961 22 H 0.060 0.940 23 H 0.063 0.937 24 H 0.065 0.935 25 H 0.061 0.939 26 H 0.021 0.979 27 H 0.056 0.944 28 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.289 -2.999 5.444 10.360 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.162 4.162 3 C 0.048 3.952 4 H 0.052 0.948 5 C -0.166 4.166 6 C -0.172 4.172 7 C -0.013 4.013 8 N -0.332 5.332 9 C -0.438 4.438 10 H 0.087 0.913 11 C -0.218 4.218 12 N -0.570 5.570 13 Si 0.901 3.099 14 H -0.228 1.228 15 H -0.213 1.213 16 H -0.220 1.220 17 H 0.056 0.944 18 H 0.109 0.891 19 H 0.047 0.953 20 H 0.072 0.928 21 H 0.058 0.942 22 H 0.079 0.921 23 H 0.082 0.918 24 H 0.084 0.916 25 H 0.080 0.920 26 H 0.039 0.961 27 H 0.074 0.926 28 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 8.545 -3.126 3.811 9.865 hybrid contribution -0.390 0.050 1.706 1.750 sum 8.155 -3.076 5.516 10.315 Atomic orbital electron populations 1.21890 0.95924 0.98727 1.04203 1.21865 0.96853 0.97994 0.99443 1.21106 0.91762 0.91786 0.90538 0.94769 1.22613 0.96733 0.98449 0.98844 1.22768 0.98200 0.98384 0.97808 1.22141 0.87184 0.97841 0.94126 1.44836 1.01618 1.66459 1.20268 1.19959 0.84004 1.47241 0.92590 0.91334 1.26197 1.01469 0.98004 0.96093 1.70923 1.02914 1.45979 1.37152 0.83782 0.74277 0.76599 0.75247 1.22838 1.21289 1.22004 0.94363 0.89140 0.95298 0.92777 0.94200 0.92103 0.91828 0.91615 0.92037 0.96145 0.92584 0.92883 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.11 9.11 37.16 0.34 -2.77 15 2 C -0.12 -2.42 5.46 -26.73 -0.15 -2.56 15 3 C 0.15 3.22 3.23 -66.95 -0.22 3.01 15 4 H 0.03 0.74 8.13 -51.93 -0.42 0.31 15 5 C -0.13 -2.19 6.48 -24.89 -0.16 -2.35 15 6 C -0.13 -2.34 7.10 -24.46 -0.17 -2.51 15 7 C 0.11 2.49 4.54 -2.41 -0.01 2.48 15 8 N -0.61 -14.95 2.82 -162.43 -0.46 -15.41 15 9 C -0.31 -8.76 7.57 -15.06 -0.11 -8.88 15 10 H 0.07 2.07 7.64 -52.49 -0.40 1.67 15 11 C -0.02 -0.50 5.49 -17.43 -0.10 -0.60 15 12 N -0.93 -29.19 13.70 55.49 0.76 -28.43 15 13 Si 1.07 27.20 24.84 -169.99 -4.22 22.97 15 14 H -0.30 -7.80 7.11 56.52 0.40 -7.40 15 15 H -0.29 -6.71 5.64 56.52 0.32 -6.39 15 16 H -0.29 -7.26 7.11 56.52 0.40 -6.86 15 17 H 0.04 0.76 8.12 -51.93 -0.42 0.34 15 18 H 0.09 2.22 5.60 -51.93 -0.29 1.93 15 19 H 0.03 0.52 8.14 -51.93 -0.42 0.10 15 20 H 0.05 1.13 8.14 -51.93 -0.42 0.70 15 21 H 0.04 0.67 8.14 -51.93 -0.42 0.25 15 22 H 0.06 0.89 8.14 -51.93 -0.42 0.47 15 23 H 0.06 1.03 7.85 -51.93 -0.41 0.62 15 24 H 0.07 1.11 8.14 -51.93 -0.42 0.69 15 25 H 0.06 0.92 8.14 -51.93 -0.42 0.50 15 26 H 0.02 0.47 5.38 -51.93 -0.28 0.19 15 27 H 0.06 1.31 6.95 -51.93 -0.36 0.95 15 28 H 0.26 8.12 8.73 -40.82 -0.36 7.76 15 LS Contribution 217.47 15.07 3.28 3.28 Total: -1.00 -30.36 217.47 -5.58 -35.94 By element: Atomic # 1 Polarization: 0.19 SS G_CDS: -4.36 Total: -4.16 kcal Atomic # 6 Polarization: -13.60 SS G_CDS: -0.58 Total: -14.18 kcal Atomic # 7 Polarization: -44.14 SS G_CDS: 0.30 Total: -43.84 kcal Atomic # 14 Polarization: 27.20 SS G_CDS: -4.22 Total: 22.97 kcal Total LS contribution 3.28 Total: 3.28 kcal Total: -30.36 -5.58 -35.94 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000037913731.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.029 kcal (2) G-P(sol) polarization free energy of solvation -30.357 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.671 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.578 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.935 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.093 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.11 seconds