Wall clock time and date at job start Mon Mar 30 2020 01:57:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53008 * 109.46781 * 2 1 4 4 H 1.08997 * 109.87038 * 54.24310 * 3 2 1 5 5 C 1.54331 * 110.00853 * 175.33686 * 3 2 1 6 6 C 1.55154 * 102.94031 * 141.68321 * 5 3 2 7 7 C 1.55135 * 101.48515 * 324.33126 * 6 5 3 8 8 N 1.47018 * 109.88219 * 293.22142 * 3 2 1 9 9 C 1.36939 * 125.64687 * 61.45245 * 8 3 2 10 10 H 1.07995 * 119.99901 * 31.62795 * 9 8 3 11 11 C 1.38812 * 119.99850 * 211.62507 * 9 8 3 12 12 N 1.31621 * 119.99807 * 189.02101 * 11 9 8 13 13 Si 1.86795 * 119.99937 * 9.02377 * 11 9 8 14 14 H 1.48510 * 109.46907 * 174.46214 * 13 11 9 15 15 H 1.48500 * 109.47321 * 294.45942 * 13 11 9 16 16 H 1.48502 * 109.47501 * 54.46325 * 13 11 9 17 17 H 1.09001 * 109.47418 * 308.30476 * 1 2 3 18 18 H 1.08997 * 109.47349 * 68.30768 * 1 2 3 19 19 H 1.09002 * 109.46869 * 188.30898 * 1 2 3 20 20 H 1.08995 * 109.47783 * 240.00105 * 2 1 3 21 21 H 1.09000 * 109.47345 * 119.99616 * 2 1 3 22 22 H 1.08999 * 110.71926 * 260.04835 * 5 3 2 23 23 H 1.08998 * 110.72107 * 23.14125 * 5 3 2 24 24 H 1.08997 * 111.00416 * 82.56824 * 6 5 3 25 25 H 1.08998 * 111.00395 * 206.38515 * 6 5 3 26 26 H 1.09002 * 110.49867 * 278.45455 * 7 6 5 27 27 H 1.09003 * 110.33967 * 156.05720 * 7 6 5 28 28 H 0.96998 * 119.99993 * 354.94901 * 12 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 1.5986 1.9915 0.8319 5 6 3.5786 1.4588 0.1179 6 6 3.9870 2.6229 -0.8230 7 6 2.9374 2.4861 -1.9572 8 7 1.6926 2.0957 -1.2705 9 6 0.4232 2.3018 -1.7410 10 1 -0.3888 2.4683 -1.0488 11 6 0.1802 2.2969 -3.1077 12 7 -0.9954 2.6685 -3.5685 13 14 1.5216 1.7628 -4.2929 14 1 0.9741 1.7180 -5.6726 15 1 2.6456 2.7318 -4.2377 16 1 2.0116 0.4140 -3.9107 17 1 -0.3634 0.6370 0.8064 18 1 -0.3634 0.3798 -0.9548 19 1 -0.3633 -1.0169 0.1485 20 1 1.8934 -0.5138 -0.8899 21 1 1.8933 -0.5138 0.8900 22 1 3.8846 1.6661 1.1433 23 1 4.0017 0.5149 -0.2259 24 1 3.8972 3.5841 -0.3169 25 1 4.9967 2.4788 -1.2073 26 1 3.2386 1.7137 -2.6649 27 1 2.8055 3.4397 -2.4684 28 1 -1.7147 2.8754 -2.9516 RHF calculation, no. of doubly occupied orbitals= 32 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000037913731.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:57:46 Heat of formation + Delta-G solvation = -11.214854 kcal Electronic energy + Delta-G solvation = -10369.178364 eV Core-core repulsion = 8612.417894 eV Total energy + Delta-G solvation = -1756.760470 eV No. of doubly occupied orbitals = 32 Molecular weight (most abundant/longest-lived isotopes) = 169.116 amu Computer time = 0.13 seconds Orbital eigenvalues (eV) -39.66460 -34.75972 -33.96517 -31.59997 -28.73199 -25.95490 -23.75490 -22.13457 -20.71096 -19.47424 -17.16372 -16.77482 -15.42567 -15.26171 -14.77202 -14.17008 -14.02168 -13.40522 -13.27887 -12.89314 -12.79166 -12.15865 -12.02479 -11.76768 -11.48409 -11.35699 -11.23850 -11.05612 -10.54177 -9.03214 -8.42089 -5.53573 1.42661 1.52029 1.72306 2.56361 3.19868 3.39697 3.95137 3.99537 4.19319 4.33413 4.43771 4.59400 4.69310 4.75886 4.94363 5.00662 5.06672 5.16022 5.22622 5.25386 5.37170 5.59074 5.63005 5.81173 6.26121 6.91630 7.52781 8.25207 8.92290 Molecular weight = 169.12amu Principal moments of inertia in cm(-1) A = 0.042505 B = 0.024649 C = 0.018535 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 658.594396 B = 1135.681516 C = 1510.320493 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.119 4.119 3 C 0.142 3.858 4 H 0.024 0.976 5 C -0.117 4.117 6 C -0.121 4.121 7 C 0.098 3.902 8 N -0.626 5.626 9 C -0.284 4.284 10 H 0.033 0.967 11 C -0.076 4.076 12 N -0.968 5.968 13 Si 1.105 2.895 14 H -0.312 1.312 15 H -0.254 1.254 16 H -0.281 1.281 17 H 0.036 0.964 18 H 0.042 0.958 19 H 0.053 0.947 20 H 0.043 0.957 21 H 0.080 0.920 22 H 0.093 0.907 23 H 0.080 0.920 24 H 0.070 0.930 25 H 0.098 0.902 26 H 0.024 0.976 27 H 0.038 0.962 28 H 0.245 0.755 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.306 -3.918 6.609 13.670 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.158 4.158 3 C 0.036 3.964 4 H 0.042 0.958 5 C -0.155 4.155 6 C -0.159 4.159 7 C -0.026 4.026 8 N -0.353 5.353 9 C -0.414 4.414 10 H 0.051 0.949 11 C -0.269 4.269 12 N -0.612 5.612 13 Si 0.932 3.068 14 H -0.241 1.241 15 H -0.179 1.179 16 H -0.207 1.207 17 H 0.055 0.945 18 H 0.061 0.939 19 H 0.072 0.928 20 H 0.062 0.938 21 H 0.098 0.902 22 H 0.112 0.888 23 H 0.098 0.902 24 H 0.089 0.911 25 H 0.116 0.884 26 H 0.042 0.958 27 H 0.056 0.944 28 H 0.054 0.946 Dipole moment (debyes) X Y Z Total from point charges 11.602 -4.044 5.023 13.274 hybrid contribution -1.369 0.336 1.488 2.050 sum 10.233 -3.708 6.510 12.683 Atomic orbital electron populations 1.21785 0.97333 0.99869 1.01381 1.21835 0.95533 0.97597 1.00800 1.21369 0.95128 0.91818 0.88066 0.95769 1.22608 0.92980 0.99084 1.00793 1.22743 0.98324 0.99007 0.95873 1.22314 0.87514 0.96876 0.95945 1.45002 1.01112 1.67516 1.21670 1.19728 0.85170 1.44531 0.91935 0.94878 1.27350 1.02591 0.98666 0.98295 1.71028 1.03743 1.49546 1.36908 0.83348 0.73205 0.77499 0.72774 1.24076 1.17874 1.20740 0.94502 0.93862 0.92840 0.93766 0.90199 0.88826 0.90182 0.91141 0.88390 0.95825 0.94378 0.94559 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.98 9.11 71.98 0.66 -5.32 15 2 C -0.12 -4.37 5.46 30.60 0.17 -4.20 15 3 C 0.14 5.55 3.23 45.35 0.15 5.69 15 4 H 0.02 1.00 8.13 -2.39 -0.02 0.98 15 5 C -0.12 -3.38 6.48 31.78 0.21 -3.17 15 6 C -0.12 -3.68 7.10 32.06 0.23 -3.45 15 7 C 0.10 4.09 4.54 86.93 0.39 4.48 15 8 N -0.63 -30.32 2.82 -667.80 -1.89 -32.20 15 9 C -0.28 -16.48 7.57 84.03 0.64 -15.85 15 10 H 0.03 2.12 7.64 -2.91 -0.02 2.10 15 11 C -0.08 -4.58 5.49 84.86 0.47 -4.12 15 12 N -0.97 -63.43 13.70 21.65 0.30 -63.13 15 13 Si 1.10 54.95 24.84 68.60 1.70 56.66 15 14 H -0.31 -16.00 7.11 99.48 0.71 -15.30 15 15 H -0.25 -11.19 5.64 99.48 0.56 -10.63 15 16 H -0.28 -13.26 7.11 99.48 0.71 -12.56 15 17 H 0.04 1.46 8.12 -2.39 -0.02 1.44 15 18 H 0.04 2.17 5.60 -2.39 -0.01 2.15 15 19 H 0.05 1.87 8.14 -2.39 -0.02 1.85 15 20 H 0.04 1.72 8.14 -2.39 -0.02 1.70 15 21 H 0.08 2.34 8.14 -2.39 -0.02 2.32 15 22 H 0.09 2.16 8.14 -2.39 -0.02 2.14 15 23 H 0.08 2.10 7.85 -2.39 -0.02 2.08 15 24 H 0.07 2.08 8.14 -2.39 -0.02 2.06 15 25 H 0.10 2.32 8.14 -2.39 -0.02 2.31 15 26 H 0.02 1.00 5.38 -2.39 -0.01 0.99 15 27 H 0.04 1.70 6.95 -2.39 -0.02 1.69 15 28 H 0.25 16.20 8.73 -92.71 -0.81 15.39 15 Total: -1.00 -67.84 217.47 3.94 -63.90 By element: Atomic # 1 Polarization: -0.22 SS G_CDS: 0.93 Total: 0.71 kcal Atomic # 6 Polarization: -28.83 SS G_CDS: 2.90 Total: -25.93 kcal Atomic # 7 Polarization: -93.75 SS G_CDS: -1.59 Total: -95.34 kcal Atomic # 14 Polarization: 54.95 SS G_CDS: 1.70 Total: 56.66 kcal Total: -67.84 3.94 -63.90 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000037913731.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.687 kcal (2) G-P(sol) polarization free energy of solvation -67.844 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.157 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.942 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.902 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.215 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.13 seconds