Wall clock time and date at job start Mon Mar 30 2020 01:43:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.34420 * 124.34787 * 2 1 4 4 O 1.21278 * 124.94325 * 359.58655 * 3 2 1 5 5 C 1.51282 * 110.11653 * 179.61754 * 3 2 1 6 6 C 1.54638 * 104.19376 * 343.75125 * 5 3 2 7 7 C 1.46764 * 124.35137 * 180.02562 * 2 1 3 8 8 H 1.08997 * 110.31477 * 316.03344 * 7 2 1 9 9 C 1.50698 * 110.24638 * 77.99015 * 7 2 1 10 10 H 1.08003 * 120.00311 * 31.30513 * 9 7 2 11 11 C 1.37879 * 120.00247 * 211.30173 * 9 7 2 12 12 N 1.31515 * 120.00026 * 174.57809 * 11 9 7 13 13 Si 1.86796 * 119.99815 * 354.30957 * 11 9 7 14 14 H 1.48501 * 109.47266 * 94.48140 * 13 11 9 15 15 H 1.48496 * 109.47367 * 214.48678 * 13 11 9 16 16 H 1.48499 * 109.47015 * 334.48714 * 13 11 9 17 17 H 1.08998 * 109.46774 * 265.11506 * 1 2 3 18 18 H 1.08999 * 109.47338 * 25.11476 * 1 2 3 19 19 H 1.08995 * 109.47467 * 145.11762 * 1 2 3 20 20 H 1.08999 * 110.48654 * 225.07511 * 5 3 2 21 21 H 1.09000 * 110.59957 * 102.48236 * 5 3 2 22 22 H 1.08994 * 110.96854 * 266.67673 * 6 5 3 23 23 H 1.09001 * 110.96900 * 142.91673 * 6 5 3 24 24 H 0.96997 * 119.99820 * 179.97438 * 12 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2234 1.1098 0.0000 4 8 1.7946 2.2442 -0.0072 5 6 3.6898 0.7379 0.0095 6 6 3.7012 -0.7488 0.4346 7 6 2.2931 -1.2117 -0.0005 8 1 1.8993 -1.9395 0.7088 9 6 2.3445 -1.8076 -1.3837 10 1 2.2848 -1.1663 -2.2507 11 6 2.4678 -3.1716 -1.5426 12 7 2.4056 -3.7020 -2.7445 13 14 2.7309 -4.2656 -0.0515 14 1 1.4215 -4.7847 0.4188 15 1 3.6106 -5.4034 -0.4212 16 1 3.3697 -3.4782 1.0335 17 1 -0.3633 -0.0875 1.0239 18 1 -0.3634 0.9305 -0.4362 19 1 -0.3634 -0.8430 -0.5877 20 1 4.2328 1.3458 0.7331 21 1 4.1212 0.8537 -0.9848 22 1 3.8274 -0.8452 1.5129 23 1 4.4754 -1.3010 -0.0981 24 1 2.4927 -4.6615 -2.8563 RHF calculation, no. of doubly occupied orbitals= 31 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000039078378.mol2 24 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:43:19 Heat of formation + Delta-G solvation = -39.337631 kcal Electronic energy + Delta-G solvation = -9886.628789 eV Core-core repulsion = 7992.815729 eV Total energy + Delta-G solvation = -1893.813060 eV No. of doubly occupied orbitals = 31 Molecular weight (most abundant/longest-lived isotopes) = 169.084 amu Computer time = 0.07 seconds Orbital eigenvalues (eV) -39.43229 -35.75473 -32.60067 -31.84154 -28.01164 -25.83419 -23.77973 -20.61279 -18.52978 -17.29815 -15.83063 -15.26958 -14.63682 -13.90096 -13.19472 -12.94236 -12.62006 -12.32196 -11.82119 -11.49644 -11.19638 -11.03809 -10.69390 -10.32709 -10.05201 -9.55851 -8.99845 -8.75074 -7.70571 -6.28437 -4.31193 3.13518 3.24521 3.24764 3.38950 4.01472 4.22388 4.97961 5.28222 5.57681 5.71080 5.93384 6.04480 6.19965 6.37034 6.40811 6.48586 6.64394 6.83529 7.34859 7.50013 8.05398 8.33105 8.77576 9.01464 9.32753 10.83828 Molecular weight = 169.08amu Principal moments of inertia in cm(-1) A = 0.061302 B = 0.017614 C = 0.016616 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 456.646956 B = 1589.281205 C = 1684.730141 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.101 3.899 2 N -0.600 5.600 3 C 0.511 3.489 4 O -0.572 6.572 5 C -0.144 4.144 6 C -0.131 4.131 7 C 0.226 3.774 8 H 0.045 0.955 9 C -0.529 4.529 10 H 0.078 0.922 11 C 0.078 3.922 12 N -0.887 5.887 13 Si 0.872 3.128 14 H -0.275 1.275 15 H -0.283 1.283 16 H -0.259 1.259 17 H 0.043 0.957 18 H 0.064 0.936 19 H 0.074 0.926 20 H 0.083 0.917 21 H 0.098 0.902 22 H 0.054 0.946 23 H 0.087 0.913 24 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.836 1.610 6.519 6.767 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.042 4.042 2 N -0.331 5.331 3 C 0.300 3.700 4 O -0.454 6.454 5 C -0.184 4.184 6 C -0.170 4.170 7 C 0.124 3.876 8 H 0.063 0.937 9 C -0.567 4.567 10 H 0.096 0.904 11 C -0.126 4.126 12 N -0.523 5.523 13 Si 0.699 3.301 14 H -0.201 1.201 15 H -0.209 1.209 16 H -0.183 1.183 17 H 0.061 0.939 18 H 0.082 0.918 19 H 0.093 0.907 20 H 0.101 0.899 21 H 0.117 0.883 22 H 0.073 0.927 23 H 0.105 0.895 24 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 0.529 1.974 6.402 6.720 hybrid contribution 0.098 -0.856 0.557 1.026 sum 0.626 1.118 6.959 7.076 Atomic orbital electron populations 1.21345 0.79714 1.02754 1.00358 1.48473 1.06029 1.08320 1.70318 1.20904 0.89859 0.84164 0.75112 1.90599 1.79331 1.21739 1.53713 1.22162 0.94390 0.98142 1.03719 1.22905 1.00289 0.94470 0.99294 1.19806 0.86657 0.83398 0.97767 0.93742 1.21162 1.51828 0.92671 0.91087 0.90410 1.24986 0.93957 0.97767 0.95889 1.69907 1.48233 1.12291 1.21855 0.86916 0.78935 0.80732 0.83547 1.20096 1.20891 1.18326 0.93892 0.91756 0.90736 0.89879 0.88323 0.92737 0.89469 0.92246 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 1.90 11.00 59.85 0.66 2.56 14 2 N -0.60 -13.06 2.96 -174.03 -0.51 -13.57 14 3 C 0.51 11.24 8.02 -10.86 -0.09 11.16 14 4 O -0.57 -13.89 17.52 5.56 0.10 -13.79 14 5 C -0.14 -2.69 6.85 -26.74 -0.18 -2.87 14 6 C -0.13 -2.53 6.23 -25.10 -0.16 -2.68 14 7 C 0.23 5.04 2.51 -68.17 -0.17 4.87 14 8 H 0.04 0.98 5.81 -51.93 -0.30 0.68 14 9 C -0.53 -13.90 9.12 -34.44 -0.31 -14.21 14 10 H 0.08 2.30 8.06 -52.48 -0.42 1.88 14 11 C 0.08 2.09 5.47 -17.82 -0.10 1.99 14 12 N -0.89 -25.46 13.96 55.43 0.77 -24.69 14 13 Si 0.87 19.50 26.95 -169.99 -4.58 14.92 14 14 H -0.28 -6.11 7.11 56.52 0.40 -5.71 14 15 H -0.28 -6.35 7.11 56.52 0.40 -5.95 14 16 H -0.26 -5.38 6.54 56.52 0.37 -5.01 14 17 H 0.04 0.70 8.14 -51.93 -0.42 0.28 14 18 H 0.06 1.18 7.82 -51.93 -0.41 0.78 14 19 H 0.07 1.40 8.14 -51.93 -0.42 0.98 14 20 H 0.08 1.33 8.14 -51.93 -0.42 0.91 14 21 H 0.10 1.81 8.14 -51.93 -0.42 1.38 14 22 H 0.05 0.93 8.14 -51.93 -0.42 0.51 14 23 H 0.09 1.68 7.89 -51.93 -0.41 1.27 14 24 H 0.27 7.17 8.31 -40.82 -0.34 6.83 14 LS Contribution 209.95 15.07 3.16 3.16 Total: -1.00 -30.11 209.95 -4.23 -34.34 By element: Atomic # 1 Polarization: 1.64 SS G_CDS: -2.82 Total: -1.18 kcal Atomic # 6 Polarization: 1.16 SS G_CDS: -0.35 Total: 0.81 kcal Atomic # 7 Polarization: -38.52 SS G_CDS: 0.26 Total: -38.26 kcal Atomic # 8 Polarization: -13.89 SS G_CDS: 0.10 Total: -13.79 kcal Atomic # 14 Polarization: 19.50 SS G_CDS: -4.58 Total: 14.92 kcal Total LS contribution 3.16 Total: 3.16 kcal Total: -30.11 -4.23 -34.34 kcal The number of atoms in the molecule is 24 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000039078378.mol2 24 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.995 kcal (2) G-P(sol) polarization free energy of solvation -30.110 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.105 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.232 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.343 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.338 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.07 seconds