Wall clock time and date at job start Mon Mar 30 2020 01:43:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.34420 * 124.34787 * 2 1 4 4 O 1.21278 * 124.94325 * 359.58655 * 3 2 1 5 5 C 1.51282 * 110.11653 * 179.61754 * 3 2 1 6 6 C 1.54638 * 104.19376 * 343.75125 * 5 3 2 7 7 C 1.46764 * 124.35137 * 180.02562 * 2 1 3 8 8 H 1.08997 * 110.31477 * 316.03344 * 7 2 1 9 9 C 1.50698 * 110.24638 * 77.99015 * 7 2 1 10 10 H 1.08003 * 120.00311 * 31.30513 * 9 7 2 11 11 C 1.37879 * 120.00247 * 211.30173 * 9 7 2 12 12 N 1.31515 * 120.00026 * 174.57809 * 11 9 7 13 13 Si 1.86796 * 119.99815 * 354.30957 * 11 9 7 14 14 H 1.48501 * 109.47266 * 94.48140 * 13 11 9 15 15 H 1.48496 * 109.47367 * 214.48678 * 13 11 9 16 16 H 1.48499 * 109.47015 * 334.48714 * 13 11 9 17 17 H 1.08998 * 109.46774 * 265.11506 * 1 2 3 18 18 H 1.08999 * 109.47338 * 25.11476 * 1 2 3 19 19 H 1.08995 * 109.47467 * 145.11762 * 1 2 3 20 20 H 1.08999 * 110.48654 * 225.07511 * 5 3 2 21 21 H 1.09000 * 110.59957 * 102.48236 * 5 3 2 22 22 H 1.08994 * 110.96854 * 266.67673 * 6 5 3 23 23 H 1.09001 * 110.96900 * 142.91673 * 6 5 3 24 24 H 0.96997 * 119.99820 * 179.97438 * 12 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2234 1.1098 0.0000 4 8 1.7946 2.2442 -0.0072 5 6 3.6898 0.7379 0.0095 6 6 3.7012 -0.7488 0.4346 7 6 2.2931 -1.2117 -0.0005 8 1 1.8993 -1.9395 0.7088 9 6 2.3445 -1.8076 -1.3837 10 1 2.2848 -1.1663 -2.2507 11 6 2.4678 -3.1716 -1.5426 12 7 2.4056 -3.7020 -2.7445 13 14 2.7309 -4.2656 -0.0515 14 1 1.4215 -4.7847 0.4188 15 1 3.6106 -5.4034 -0.4212 16 1 3.3697 -3.4782 1.0335 17 1 -0.3633 -0.0875 1.0239 18 1 -0.3634 0.9305 -0.4362 19 1 -0.3634 -0.8430 -0.5877 20 1 4.2328 1.3458 0.7331 21 1 4.1212 0.8537 -0.9848 22 1 3.8274 -0.8452 1.5129 23 1 4.4754 -1.3010 -0.0981 24 1 2.4927 -4.6615 -2.8563 RHF calculation, no. of doubly occupied orbitals= 31 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000039078378.mol2 24 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:43:19 Heat of formation + Delta-G solvation = -60.166402 kcal Electronic energy + Delta-G solvation = -9887.531992 eV Core-core repulsion = 7992.815729 eV Total energy + Delta-G solvation = -1894.716263 eV No. of doubly occupied orbitals = 31 Molecular weight (most abundant/longest-lived isotopes) = 169.084 amu Computer time = 0.08 seconds Orbital eigenvalues (eV) -41.12485 -37.53345 -34.59091 -33.43417 -29.87129 -27.39955 -25.60826 -22.29754 -20.22691 -19.25465 -17.53941 -17.02833 -16.36341 -15.68391 -14.73404 -14.70731 -14.42160 -13.98815 -13.44092 -13.07336 -12.90437 -12.74743 -12.35062 -11.98374 -11.78398 -11.40840 -10.74922 -10.72366 -9.44746 -8.32433 -6.41481 1.40536 1.43898 1.55206 1.68493 2.35121 2.38752 3.03760 3.67755 3.99274 4.23313 4.41595 4.58469 4.65484 4.80077 4.86137 4.93912 5.10886 5.27438 5.56228 5.72302 6.21558 6.44372 6.64481 7.21850 7.35723 8.83893 Molecular weight = 169.08amu Principal moments of inertia in cm(-1) A = 0.061302 B = 0.017614 C = 0.016616 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 456.646956 B = 1589.281205 C = 1684.730141 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.095 3.905 2 N -0.608 5.608 3 C 0.500 3.500 4 O -0.601 6.601 5 C -0.138 4.138 6 C -0.125 4.125 7 C 0.222 3.778 8 H 0.058 0.942 9 C -0.531 4.531 10 H 0.025 0.975 11 C 0.022 3.978 12 N -0.941 5.941 13 Si 0.941 3.059 14 H -0.270 1.270 15 H -0.285 1.285 16 H -0.224 1.224 17 H 0.073 0.927 18 H 0.061 0.939 19 H 0.067 0.933 20 H 0.118 0.882 21 H 0.096 0.904 22 H 0.089 0.911 23 H 0.086 0.914 24 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.561 1.275 9.008 9.230 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.047 4.047 2 N -0.339 5.339 3 C 0.290 3.710 4 O -0.485 6.485 5 C -0.177 4.177 6 C -0.164 4.164 7 C 0.120 3.880 8 H 0.076 0.924 9 C -0.570 4.570 10 H 0.043 0.957 11 C -0.178 4.178 12 N -0.579 5.579 13 Si 0.763 3.237 14 H -0.196 1.196 15 H -0.211 1.211 16 H -0.147 1.147 17 H 0.092 0.908 18 H 0.080 0.920 19 H 0.086 0.914 20 H 0.136 0.864 21 H 0.115 0.885 22 H 0.108 0.892 23 H 0.105 0.895 24 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 1.250 1.656 8.902 9.141 hybrid contribution -0.194 -0.692 -0.319 0.786 sum 1.056 0.965 8.584 8.702 Atomic orbital electron populations 1.21511 0.78631 1.02399 1.02184 1.48638 1.07105 1.08214 1.69934 1.21492 0.91338 0.83722 0.74443 1.90578 1.80147 1.22720 1.55048 1.22202 0.92349 0.98455 1.04732 1.22866 0.97746 0.94318 1.01426 1.19820 0.88878 0.83853 0.95459 0.92448 1.21268 1.51552 0.92428 0.91716 0.95666 1.25913 0.93407 0.99329 0.99134 1.70067 1.50243 1.12814 1.24824 0.85821 0.79179 0.78540 0.80114 1.19563 1.21130 1.14650 0.90811 0.91969 0.91373 0.86419 0.88530 0.89227 0.89508 0.92150 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 3.46 11.00 127.77 1.41 4.87 14 2 N -0.61 -25.55 2.96 -823.11 -2.44 -27.99 14 3 C 0.50 21.21 8.02 87.90 0.71 21.92 14 4 O -0.60 -28.58 17.52 -3.02 -0.05 -28.64 14 5 C -0.14 -4.76 6.85 30.59 0.21 -4.55 14 6 C -0.13 -4.36 6.23 31.65 0.20 -4.16 14 7 C 0.22 9.42 2.51 44.69 0.11 9.53 14 8 H 0.06 2.31 5.81 -2.39 -0.01 2.29 14 9 C -0.53 -28.05 9.12 25.60 0.23 -27.82 14 10 H 0.02 1.55 8.06 -2.91 -0.02 1.53 14 11 C 0.02 1.15 5.47 84.66 0.46 1.61 14 12 N -0.94 -55.28 13.96 21.45 0.30 -54.98 14 13 Si 0.94 38.69 26.95 68.60 1.85 40.54 14 14 H -0.27 -10.88 7.11 99.48 0.71 -10.17 14 15 H -0.29 -11.80 7.11 99.48 0.71 -11.09 14 16 H -0.22 -7.91 6.54 99.48 0.65 -7.26 14 17 H 0.07 2.24 8.14 -2.39 -0.02 2.22 14 18 H 0.06 2.27 7.82 -2.39 -0.02 2.25 14 19 H 0.07 2.54 8.14 -2.39 -0.02 2.52 14 20 H 0.12 3.27 8.14 -2.39 -0.02 3.25 14 21 H 0.10 3.38 8.14 -2.39 -0.02 3.36 14 22 H 0.09 2.55 8.14 -2.39 -0.02 2.53 14 23 H 0.09 3.05 7.89 -2.39 -0.02 3.04 14 24 H 0.27 14.74 8.31 -92.71 -0.77 13.97 14 Total: -1.00 -65.34 209.95 4.11 -61.24 By element: Atomic # 1 Polarization: 7.30 SS G_CDS: 1.12 Total: 8.42 kcal Atomic # 6 Polarization: -1.92 SS G_CDS: 3.33 Total: 1.41 kcal Atomic # 7 Polarization: -80.83 SS G_CDS: -2.14 Total: -82.97 kcal Atomic # 8 Polarization: -28.58 SS G_CDS: -0.05 Total: -28.64 kcal Atomic # 14 Polarization: 38.69 SS G_CDS: 1.85 Total: 40.54 kcal Total: -65.34 4.11 -61.24 kcal The number of atoms in the molecule is 24 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000039078378.mol2 24 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.070 kcal (2) G-P(sol) polarization free energy of solvation -65.345 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.275 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.108 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.236 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.166 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.08 seconds