Wall clock time and date at job start Mon Mar 30 2020 02:07:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08996 * 110.28633 * 2 1 4 4 C 1.54252 * 110.32476 * 122.12723 * 2 1 3 5 5 C 1.54382 * 105.06118 * 118.89721 * 4 2 1 6 6 N 1.48559 * 104.59109 * 23.84982 * 5 4 2 7 7 C 1.46907 * 110.99383 * 200.96168 * 6 5 4 8 8 C 1.50703 * 109.46749 * 175.71327 * 7 6 5 9 9 H 1.08004 * 119.99861 * 5.21552 * 8 7 6 10 10 C 1.37875 * 120.00036 * 185.21454 * 8 7 6 11 11 N 1.31515 * 119.99728 * 359.97438 * 10 8 7 12 12 Si 1.86795 * 119.99953 * 180.02562 * 10 8 7 13 13 H 1.48501 * 109.47498 * 359.97438 * 12 10 8 14 14 H 1.48504 * 109.47252 * 120.00251 * 12 10 8 15 15 H 1.48505 * 109.47022 * 239.99794 * 12 10 8 16 16 C 1.48555 * 104.22622 * 320.51714 * 6 5 4 17 17 H 1.09001 * 109.46720 * 299.32744 * 1 2 3 18 18 H 1.08996 * 109.47283 * 179.32780 * 1 2 3 19 19 H 1.08992 * 109.47409 * 59.32627 * 1 2 3 20 20 H 1.09004 * 110.32515 * 237.79327 * 4 2 1 21 21 H 1.09003 * 110.32766 * 359.97438 * 4 2 1 22 22 H 1.08996 * 110.41293 * 142.63101 * 5 4 2 23 23 H 1.09008 * 110.40494 * 264.95423 * 5 4 2 24 24 H 1.09000 * 109.47078 * 295.71286 * 7 6 5 25 25 H 1.08993 * 109.47285 * 55.71618 * 7 6 5 26 26 H 0.97000 * 119.99930 * 180.02562 * 11 10 8 27 27 H 1.09004 * 110.41154 * 280.71108 * 16 6 5 28 28 H 1.08992 * 110.41135 * 158.26104 * 16 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9079 1.0224 0.0000 4 6 2.0658 -0.7692 1.2250 5 6 2.8807 -1.9415 0.6376 6 7 3.2693 -1.4834 -0.7212 7 6 3.6067 -2.6232 -1.5844 8 6 3.8929 -2.1295 -2.9792 9 1 3.9131 -1.0691 -3.1831 10 6 4.1288 -3.0315 -3.9950 11 7 4.1047 -4.3227 -3.7465 12 14 4.4841 -2.4194 -5.7236 13 1 4.4548 -0.9348 -5.7390 14 1 5.8254 -2.8930 -6.1505 15 1 3.4542 -2.9441 -6.6560 16 6 2.0662 -0.7722 -1.2246 17 1 -0.3633 0.5034 0.8960 18 1 -0.3633 -1.0275 -0.0121 19 1 -0.3634 0.5242 -0.8838 20 1 2.7082 -0.1250 1.8254 21 1 1.2388 -1.1465 1.8266 22 1 3.7671 -2.1296 1.2434 23 1 2.2654 -2.8393 0.5766 24 1 4.4880 -3.1292 -1.1902 25 1 2.7689 -3.3199 -1.6104 26 1 4.2711 -4.9573 -4.4610 27 1 1.3228 -1.4864 -1.5789 28 1 2.3393 -0.0798 -2.0208 RHF calculation, no. of doubly occupied orbitals= 32 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000040718169.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:07:50 Heat of formation + Delta-G solvation = -31.890558 kcal Electronic energy + Delta-G solvation = -9888.630488 eV Core-core repulsion = 8130.973452 eV Total energy + Delta-G solvation = -1757.657036 eV No. of doubly occupied orbitals = 32 Molecular weight (most abundant/longest-lived isotopes) = 169.116 amu Computer time = 0.12 seconds Orbital eigenvalues (eV) -39.82713 -35.43409 -33.62171 -30.68781 -28.50858 -26.73653 -24.09727 -21.81179 -20.80460 -18.47527 -16.98276 -16.72451 -15.79396 -15.24929 -14.71461 -14.11342 -13.84212 -13.58709 -13.15303 -13.01669 -12.86519 -12.48651 -12.37393 -11.86814 -11.61495 -11.53866 -11.33484 -11.19342 -10.67311 -9.20077 -8.25756 -6.36870 1.38358 1.39322 1.53442 2.37597 3.07249 3.42378 3.79929 3.88320 4.18513 4.39415 4.59671 4.67290 4.80335 4.82040 4.89251 5.01878 5.11006 5.16431 5.18244 5.27451 5.36866 5.53216 5.60043 5.94568 6.21822 6.50122 6.80180 7.33803 8.86636 Molecular weight = 169.12amu Principal moments of inertia in cm(-1) A = 0.071715 B = 0.012316 C = 0.011248 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 390.339283 B = 2272.889814 C = 2488.823784 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.095 4.095 3 H 0.085 0.915 4 C -0.107 4.107 5 C 0.022 3.978 6 N -0.526 5.526 7 C 0.196 3.804 8 C -0.529 4.529 9 H 0.062 0.938 10 C 0.000 4.000 11 N -0.935 5.935 12 Si 0.974 3.026 13 H -0.263 1.263 14 H -0.275 1.275 15 H -0.276 1.276 16 C 0.051 3.949 17 H 0.079 0.921 18 H 0.044 0.956 19 H 0.058 0.942 20 H 0.082 0.918 21 H 0.085 0.915 22 H 0.074 0.926 23 H 0.022 0.978 24 H 0.000 1.000 25 H -0.035 1.035 26 H 0.266 0.734 27 H 0.018 0.982 28 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.904 7.598 6.465 11.592 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.114 4.114 3 H 0.103 0.897 4 C -0.145 4.145 5 C -0.107 4.107 6 N -0.250 5.250 7 C 0.069 3.931 8 C -0.567 4.567 9 H 0.080 0.920 10 C -0.198 4.198 11 N -0.576 5.576 12 Si 0.798 3.202 13 H -0.187 1.187 14 H -0.201 1.201 15 H -0.201 1.201 16 C -0.077 4.077 17 H 0.097 0.903 18 H 0.063 0.937 19 H 0.077 0.923 20 H 0.101 0.899 21 H 0.104 0.896 22 H 0.093 0.907 23 H 0.041 0.959 24 H 0.018 0.982 25 H -0.017 1.017 26 H 0.075 0.925 27 H 0.037 0.963 28 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -5.400 7.767 6.396 11.419 hybrid contribution -0.262 -0.999 -1.064 1.482 sum -5.661 6.769 5.332 10.310 Atomic orbital electron populations 1.21808 0.93252 1.01551 1.02736 1.21953 0.96597 0.99493 0.93400 0.89661 1.22357 0.99306 0.95790 0.97040 1.23191 0.98843 0.97191 0.91441 1.65346 1.33045 1.24145 1.02467 1.19533 0.93327 0.88003 0.92261 1.21492 1.48007 0.93443 0.93807 0.92024 1.25992 0.94918 0.94862 1.04019 1.70102 1.50681 1.02257 1.34537 0.85268 0.77979 0.78813 0.78172 1.18684 1.20095 1.20111 1.22967 0.90528 0.96521 0.97721 0.90250 0.93664 0.92334 0.89930 0.89619 0.90715 0.95924 0.98193 1.01708 0.92533 0.96322 0.92072 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.26 8.91 71.98 0.64 -2.62 15 2 C -0.10 -2.84 3.65 -9.90 -0.04 -2.87 15 3 H 0.08 2.34 8.14 -2.39 -0.02 2.32 15 4 C -0.11 -3.03 6.65 31.49 0.21 -2.82 15 5 C 0.02 0.82 6.49 86.45 0.56 1.38 15 6 N -0.53 -24.61 5.44 -886.04 -4.82 -29.43 15 7 C 0.20 11.15 4.67 85.56 0.40 11.55 15 8 C -0.53 -31.45 8.57 25.60 0.22 -31.23 15 9 H 0.06 3.60 7.15 -2.91 -0.02 3.58 15 10 C 0.00 0.00 5.46 84.65 0.46 0.47 15 11 N -0.94 -57.98 13.29 21.45 0.28 -57.69 15 12 Si 0.97 45.28 29.54 68.60 2.03 47.31 15 13 H -0.26 -11.74 7.11 99.48 0.71 -11.03 15 14 H -0.28 -12.40 7.11 99.48 0.71 -11.70 15 15 H -0.28 -12.36 7.11 99.48 0.71 -11.65 15 16 C 0.05 2.10 5.25 86.45 0.45 2.55 15 17 H 0.08 1.47 8.14 -2.39 -0.02 1.45 15 18 H 0.04 1.15 8.12 -2.39 -0.02 1.13 15 19 H 0.06 1.35 8.14 -2.39 -0.02 1.33 15 20 H 0.08 2.06 8.14 -2.39 -0.02 2.04 15 21 H 0.09 2.02 7.71 -2.39 -0.02 2.00 15 22 H 0.07 2.69 8.14 -2.39 -0.02 2.67 15 23 H 0.02 0.89 7.91 -2.38 -0.02 0.87 15 24 H 0.00 0.00 8.14 -2.39 -0.02 -0.02 15 25 H -0.03 -2.14 7.98 -2.39 -0.02 -2.16 15 26 H 0.27 15.32 8.31 -92.71 -0.77 14.55 15 27 H 0.02 0.82 7.67 -2.39 -0.02 0.81 15 28 H 0.06 2.62 7.54 -2.39 -0.02 2.61 15 Total: -1.00 -66.14 230.48 1.51 -64.63 By element: Atomic # 1 Polarization: -2.32 SS G_CDS: 1.10 Total: -1.22 kcal Atomic # 6 Polarization: -26.51 SS G_CDS: 2.91 Total: -23.60 kcal Atomic # 7 Polarization: -82.59 SS G_CDS: -4.53 Total: -87.12 kcal Atomic # 14 Polarization: 45.28 SS G_CDS: 2.03 Total: 47.31 kcal Total: -66.14 1.51 -64.63 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000040718169.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.740 kcal (2) G-P(sol) polarization free energy of solvation -66.136 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.396 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.506 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.630 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.891 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.12 seconds