Wall clock time and date at job start Mon Mar 30 2020 01:49:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52996 * 115.56138 * 2 1 4 4 C 1.53071 * 117.49130 * 214.28659 * 2 1 3 5 5 C 1.52996 * 59.98443 * 252.51850 * 4 2 1 6 6 H 1.09000 * 117.50027 * 107.50282 * 5 4 2 7 7 N 1.46905 * 117.49918 * 252.50008 * 5 4 2 8 8 C 1.46902 * 110.99800 * 223.74457 * 7 5 4 9 9 C 1.50706 * 109.46577 * 180.02562 * 8 7 5 10 10 H 1.07995 * 120.00167 * 359.72326 * 9 8 7 11 11 C 1.37879 * 119.99394 * 180.02562 * 9 8 7 12 12 N 1.31514 * 119.99350 * 179.97438 * 11 9 8 13 13 Si 1.86798 * 120.00608 * 0.02562 * 11 9 8 14 14 H 1.48500 * 109.47353 * 89.99430 * 13 11 9 15 15 H 1.48494 * 109.47031 * 209.99977 * 13 11 9 16 16 H 1.48504 * 109.46680 * 329.99678 * 13 11 9 17 17 H 1.09000 * 109.47638 * 274.31820 * 1 2 3 18 18 H 1.09011 * 109.46921 * 34.31349 * 1 2 3 19 19 H 1.09000 * 109.47409 * 154.31009 * 1 2 3 20 20 H 1.09002 * 109.46704 * 205.68710 * 3 2 1 21 21 H 1.08998 * 109.47229 * 325.68118 * 3 2 1 22 22 H 1.08994 * 109.47265 * 85.68766 * 3 2 1 23 23 H 1.09001 * 117.51432 * 145.03922 * 4 2 1 24 24 H 1.09004 * 117.49606 * 0.02562 * 4 2 1 25 25 H 1.00898 * 110.99743 * 99.79507 * 7 5 4 26 26 H 1.09000 * 109.47263 * 60.00269 * 8 7 5 27 27 H 1.09001 * 109.47582 * 299.99548 * 8 7 5 28 28 H 0.97005 * 119.99656 * 180.02562 * 12 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.1901 1.3802 0.0000 4 6 2.2366 -1.1219 -0.7649 5 6 2.2363 -1.1210 0.7650 6 1 1.6111 -1.8582 1.2687 7 7 3.4966 -0.7897 1.4434 8 6 3.7463 -1.7039 2.5659 9 6 5.0443 -1.3334 3.2360 10 1 5.6277 -0.5050 2.8625 11 6 5.4900 -2.0562 4.3223 12 7 6.6230 -1.7333 4.9068 13 14 4.4855 -3.4950 4.9629 14 1 4.9096 -4.7404 4.2742 15 1 4.7033 -3.6388 6.4247 16 1 3.0449 -3.2493 4.6988 17 1 -0.3634 0.0774 1.0247 18 1 -0.3633 0.8489 -0.5794 19 1 -0.3634 -0.9261 -0.4455 20 1 3.1824 1.3083 -0.4455 21 1 1.5813 2.0742 -0.5794 22 1 2.2772 1.7413 1.0247 23 1 3.1719 -0.8767 -1.2682 24 1 1.6112 -1.8593 -1.2682 25 1 3.4995 0.1709 1.7519 26 1 3.8077 -2.7269 2.1946 27 1 2.9313 -1.6268 3.2856 28 1 6.9368 -2.2420 5.6709 RHF calculation, no. of doubly occupied orbitals= 32 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000044369575.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:49:10 Heat of formation + Delta-G solvation = -8.112451 kcal Electronic energy + Delta-G solvation = -9621.597651 eV Core-core repulsion = 7864.971711 eV Total energy + Delta-G solvation = -1756.625940 eV No. of doubly occupied orbitals = 32 Molecular weight (most abundant/longest-lived isotopes) = 169.116 amu Computer time = 0.10 seconds Orbital eigenvalues (eV) -39.62663 -35.82729 -33.94141 -30.10873 -28.75995 -27.99468 -23.51511 -22.11814 -20.00989 -18.78213 -16.79789 -16.52681 -15.74465 -15.16570 -14.72709 -14.50855 -13.98158 -13.63244 -13.29777 -13.09774 -12.69087 -12.63718 -12.39238 -12.01936 -11.92203 -11.63068 -11.20738 -10.82718 -10.45054 -8.99854 -8.33160 -6.38441 1.33432 1.35032 1.46260 2.31935 2.86023 3.00894 3.32135 3.88315 3.99502 4.24515 4.36609 4.62019 4.76280 4.79196 4.92891 4.99167 5.05225 5.09766 5.10063 5.17033 5.29295 5.48638 5.52701 5.97106 6.52253 6.63020 6.72710 7.26851 8.83623 Molecular weight = 169.12amu Principal moments of inertia in cm(-1) A = 0.073869 B = 0.010965 C = 0.010217 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 378.959096 B = 2553.031249 C = 2739.763293 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.110 4.110 2 C -0.133 4.133 3 C -0.113 4.113 4 C -0.159 4.159 5 C -0.004 4.004 6 H 0.089 0.911 7 N -0.659 5.659 8 C 0.178 3.822 9 C -0.533 4.533 10 H 0.036 0.964 11 C 0.009 3.991 12 N -0.946 5.946 13 Si 0.954 3.046 14 H -0.265 1.265 15 H -0.278 1.278 16 H -0.252 1.252 17 H 0.055 0.945 18 H 0.076 0.924 19 H 0.064 0.936 20 H 0.050 0.950 21 H 0.080 0.920 22 H 0.050 0.950 23 H 0.086 0.914 24 H 0.108 0.892 25 H 0.337 0.663 26 H 0.023 0.977 27 H -0.012 1.012 28 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.334 1.405 -8.489 15.869 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C -0.134 4.134 3 C -0.170 4.170 4 C -0.197 4.197 5 C -0.115 4.115 6 H 0.107 0.893 7 N -0.289 5.289 8 C 0.049 3.951 9 C -0.571 4.571 10 H 0.055 0.945 11 C -0.189 4.189 12 N -0.586 5.586 13 Si 0.776 3.224 14 H -0.190 1.190 15 H -0.203 1.203 16 H -0.176 1.176 17 H 0.074 0.926 18 H 0.095 0.905 19 H 0.083 0.917 20 H 0.069 0.931 21 H 0.099 0.901 22 H 0.069 0.931 23 H 0.104 0.896 24 H 0.126 0.874 25 H 0.156 0.844 26 H 0.041 0.959 27 H 0.005 0.995 28 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -12.811 1.009 -8.773 15.559 hybrid contribution -0.261 -0.269 1.207 1.264 sum -13.072 0.740 -7.565 15.121 Atomic orbital electron populations 1.21362 0.90358 1.02962 1.01997 1.22026 0.95750 0.91526 1.04108 1.21257 1.00198 0.93976 1.01598 1.23431 1.01826 1.00911 0.93504 1.22690 0.92360 1.02048 0.94425 0.89343 1.60145 1.31638 1.07013 1.30153 1.19767 0.94061 0.93194 0.88035 1.21334 1.06207 1.16256 1.13330 0.94520 1.25891 0.96079 1.00520 0.96367 1.70053 1.22744 1.42490 1.23332 0.85622 0.79926 0.79114 0.77691 1.18987 1.20300 1.17586 0.92629 0.90486 0.91689 0.93050 0.90089 0.93112 0.89583 0.87364 0.84386 0.95921 0.99473 0.92210 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.25 9.85 71.98 0.71 -1.54 15 2 C -0.13 -3.55 2.70 -52.16 -0.14 -3.69 15 3 C -0.11 -2.90 8.79 71.98 0.63 -2.27 15 4 C -0.16 -4.53 9.75 30.62 0.30 -4.23 15 5 C 0.00 -0.15 5.96 44.91 0.27 0.11 15 6 H 0.09 3.04 7.90 -2.39 -0.02 3.02 15 7 N -0.66 -28.57 6.55 -495.56 -3.25 -31.82 15 8 C 0.18 8.91 4.36 85.56 0.37 9.29 15 9 C -0.53 -31.96 9.87 25.60 0.25 -31.71 15 10 H 0.04 2.43 8.06 -2.91 -0.02 2.41 15 11 C 0.01 0.55 5.47 84.66 0.46 1.01 15 12 N -0.95 -60.03 13.96 21.45 0.30 -59.73 15 13 Si 0.95 44.86 27.47 68.60 1.88 46.74 15 14 H -0.26 -11.98 7.11 99.48 0.71 -11.27 15 15 H -0.28 -12.61 7.11 99.48 0.71 -11.90 15 16 H -0.25 -11.12 6.54 99.48 0.65 -10.47 15 17 H 0.05 1.16 8.14 -2.39 -0.02 1.14 15 18 H 0.08 1.30 7.93 -2.38 -0.02 1.28 15 19 H 0.06 1.21 7.90 -2.39 -0.02 1.19 15 20 H 0.05 1.43 7.90 -2.39 -0.02 1.41 15 21 H 0.08 1.64 7.92 -2.39 -0.02 1.62 15 22 H 0.05 1.37 7.59 -2.39 -0.02 1.35 15 23 H 0.09 2.63 8.05 -2.39 -0.02 2.61 15 24 H 0.11 2.57 8.05 -2.38 -0.02 2.56 15 25 H 0.34 14.35 7.19 -89.70 -0.65 13.71 15 26 H 0.02 1.14 7.57 -2.39 -0.02 1.12 15 27 H -0.01 -0.61 7.20 -2.39 -0.02 -0.63 15 28 H 0.27 15.79 8.31 -92.70 -0.77 15.02 15 Total: -1.00 -65.89 235.19 2.21 -63.68 By element: Atomic # 1 Polarization: 13.74 SS G_CDS: 0.42 Total: 14.16 kcal Atomic # 6 Polarization: -35.88 SS G_CDS: 2.86 Total: -33.03 kcal Atomic # 7 Polarization: -88.60 SS G_CDS: -2.95 Total: -91.55 kcal Atomic # 14 Polarization: 44.86 SS G_CDS: 1.88 Total: 46.74 kcal Total: -65.89 2.21 -63.68 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000044369575.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.566 kcal (2) G-P(sol) polarization free energy of solvation -65.893 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.327 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.214 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.679 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.112 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.10 seconds