Wall clock time and date at job start Mon Mar 30 2020 02:06:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09000 * 109.47336 * 2 1 4 4 C 1.50698 * 109.47523 * 119.99834 * 2 1 3 5 5 H 1.08003 * 119.99707 * 25.56417 * 4 2 1 6 6 C 1.37875 * 120.00307 * 205.55718 * 4 2 1 7 7 N 1.31518 * 120.00005 * 353.57939 * 6 4 2 8 8 Si 1.86800 * 119.99944 * 173.29744 * 6 4 2 9 9 H 1.48494 * 109.47281 * 90.00348 * 8 6 4 10 10 H 1.48507 * 109.47043 * 210.00480 * 8 6 4 11 11 H 1.48499 * 109.47352 * 330.00141 * 8 6 4 12 12 N 1.46901 * 109.47115 * 240.00220 * 2 1 3 13 13 C 1.46893 * 111.00100 * 84.99654 * 12 2 1 14 14 H 1.08993 * 115.55439 * 350.58644 * 13 12 2 15 15 C 1.53005 * 117.49626 * 136.25576 * 13 12 2 16 16 C 1.53004 * 117.49936 * 204.91020 * 13 12 2 17 17 H 1.08996 * 117.49658 * 0.02562 * 16 13 12 18 18 C 1.53003 * 117.49788 * 145.02024 * 16 13 12 19 19 H 1.08997 * 109.46828 * 177.11866 * 1 2 3 20 20 H 1.09004 * 109.46711 * 297.11577 * 1 2 3 21 21 H 1.08992 * 109.47019 * 57.11191 * 1 2 3 22 22 H 0.96993 * 119.99658 * 354.30389 * 7 6 4 23 23 H 1.00905 * 110.99706 * 321.04536 * 12 2 1 24 24 H 1.09005 * 117.49625 * 214.97996 * 15 13 12 25 25 H 1.08994 * 117.50175 * 359.97120 * 15 13 12 26 26 H 1.08997 * 109.46954 * 60.00529 * 18 16 13 27 27 H 1.09002 * 109.47170 * 180.02562 * 18 16 13 28 28 H 1.09001 * 109.47149 * 300.00698 * 18 16 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0324 -0.7103 1.2304 5 1 1.4169 -1.4551 1.7131 6 6 3.2778 -0.4097 1.7399 7 7 4.0782 0.4020 1.0839 8 14 3.8252 -1.1489 3.3657 9 1 4.5135 -2.4406 3.1154 10 1 4.7581 -0.2144 4.0452 11 1 2.6392 -1.3792 4.2291 12 7 2.0196 -0.6925 -1.1995 13 6 2.0824 0.2226 -2.3469 14 1 1.6209 1.1984 -2.1958 15 6 3.3279 0.1598 -3.2332 16 6 1.9950 -0.3913 -3.7456 17 1 1.8905 -1.4740 -3.8144 18 6 1.2668 0.4119 -4.8253 19 1 -0.3633 -1.0264 -0.0517 20 1 -0.3633 0.4684 0.9148 21 1 -0.3633 0.5580 -0.8629 22 1 3.8276 0.7235 0.2038 23 1 1.4495 -1.4979 -1.4101 24 1 3.6856 1.0943 -3.6655 25 1 4.1010 -0.5601 -2.9647 26 1 1.7653 1.3714 -4.9626 27 1 1.2819 -0.1432 -5.7633 28 1 0.2341 0.5794 -4.5191 RHF calculation, no. of doubly occupied orbitals= 32 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000052286918.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:06:13 Heat of formation + Delta-G solvation = 8.785619 kcal Electronic energy + Delta-G solvation = -9821.796074 eV Core-core repulsion = 8065.902889 eV Total energy + Delta-G solvation = -1755.893185 eV No. of doubly occupied orbitals = 32 Molecular weight (most abundant/longest-lived isotopes) = 169.116 amu Computer time = 0.10 seconds Orbital eigenvalues (eV) -37.65376 -34.68899 -31.55215 -28.77772 -26.89893 -24.44831 -21.19141 -20.20590 -20.00784 -16.69589 -15.41470 -14.17237 -13.68097 -13.37358 -12.98032 -12.77943 -12.39182 -12.16293 -11.51221 -11.14292 -10.94255 -10.89532 -10.68897 -10.05555 -9.95777 -9.66505 -9.34276 -8.47857 -8.31658 -6.99977 -6.22064 -3.97533 3.50102 3.53037 3.68649 4.37410 4.61043 4.95215 5.32959 5.46546 5.59563 5.64223 5.94802 6.04852 6.11925 6.22884 6.26437 6.31058 6.40687 6.59491 6.60204 6.76260 7.00732 7.16255 8.11402 8.44583 8.58450 8.70293 9.01904 9.81955 11.17567 Molecular weight = 169.12amu Principal moments of inertia in cm(-1) A = 0.070958 B = 0.012590 C = 0.011323 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 394.504083 B = 2223.392134 C = 2472.220328 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.191 3.809 3 H 0.040 0.960 4 C -0.586 4.586 5 H 0.045 0.955 6 C 0.031 3.969 7 N -0.902 5.902 8 Si 1.068 2.932 9 H -0.289 1.289 10 H -0.285 1.285 11 H -0.290 1.290 12 N -0.645 5.645 13 C 0.034 3.966 14 H 0.083 0.917 15 C -0.170 4.170 16 C -0.185 4.185 17 H 0.097 0.903 18 C -0.116 4.116 19 H 0.039 0.961 20 H 0.049 0.951 21 H 0.022 0.978 22 H 0.279 0.721 23 H 0.320 0.680 24 H 0.082 0.918 25 H 0.093 0.907 26 H 0.052 0.948 27 H 0.052 0.948 28 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.256 -0.339 -6.707 7.951 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.085 3.915 3 H 0.058 0.942 4 C -0.626 4.626 5 H 0.064 0.936 6 C -0.177 4.177 7 N -0.536 5.536 8 Si 0.897 3.103 9 H -0.216 1.216 10 H -0.211 1.211 11 H -0.217 1.217 12 N -0.275 5.275 13 C -0.077 4.077 14 H 0.100 0.900 15 C -0.208 4.208 16 C -0.205 4.205 17 H 0.115 0.885 18 C -0.174 4.174 19 H 0.058 0.942 20 H 0.068 0.932 21 H 0.041 0.959 22 H 0.090 0.910 23 H 0.139 0.861 24 H 0.101 0.899 25 H 0.112 0.888 26 H 0.071 0.929 27 H 0.071 0.929 28 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -2.381 -0.232 -5.401 5.907 hybrid contribution -2.136 -0.025 -1.457 2.586 sum -4.517 -0.257 -6.858 8.216 Atomic orbital electron populations 1.22440 1.00821 0.99617 0.99230 1.19486 0.88246 0.95453 0.88288 0.94214 1.21833 1.04246 1.26324 1.10152 0.93639 1.25745 0.93060 0.95297 1.03556 1.70636 1.38129 1.30027 1.14834 0.83595 0.75545 0.76030 0.75180 1.21618 1.21085 1.21665 1.61328 1.56901 1.07818 1.01473 1.22618 1.00245 0.97339 0.87511 0.89952 1.23208 0.91831 1.01849 1.03923 1.22661 1.01884 0.99197 0.96747 0.88453 1.21312 0.99607 0.99188 0.97289 0.94166 0.93159 0.95857 0.90990 0.86073 0.89946 0.88803 0.92914 0.92851 0.92919 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.50 9.15 37.16 0.34 -3.16 15 2 C 0.19 4.85 1.96 -68.87 -0.13 4.72 15 3 H 0.04 1.10 6.73 -51.93 -0.35 0.75 15 4 C -0.59 -16.69 8.64 -34.44 -0.30 -16.98 15 5 H 0.05 1.29 7.82 -52.48 -0.41 0.88 15 6 C 0.03 0.89 5.45 -17.82 -0.10 0.80 15 7 N -0.90 -27.74 13.56 55.43 0.75 -26.99 15 8 Si 1.07 25.63 29.91 -169.99 -5.08 20.54 15 9 H -0.29 -6.77 7.11 56.52 0.40 -6.37 15 10 H -0.29 -6.80 7.11 56.52 0.40 -6.40 15 11 H -0.29 -6.63 7.11 56.52 0.40 -6.23 15 12 N -0.64 -15.01 6.43 -100.96 -0.65 -15.66 15 13 C 0.03 0.69 5.72 -67.71 -0.39 0.30 15 14 H 0.08 1.67 7.77 -51.93 -0.40 1.27 15 15 C -0.17 -3.12 10.11 -26.69 -0.27 -3.39 15 16 C -0.19 -3.06 6.21 -90.58 -0.56 -3.62 15 17 H 0.10 1.59 8.14 -51.93 -0.42 1.17 15 18 C -0.12 -1.57 10.19 37.16 0.38 -1.19 15 19 H 0.04 0.83 8.08 -51.93 -0.42 0.41 15 20 H 0.05 1.07 8.14 -51.93 -0.42 0.65 15 21 H 0.02 0.44 8.11 -51.93 -0.42 0.02 15 22 H 0.28 8.62 6.93 -40.82 -0.28 8.34 15 23 H 0.32 7.03 8.39 -39.29 -0.33 6.70 15 24 H 0.08 1.38 8.05 -51.93 -0.42 0.96 15 25 H 0.09 1.86 8.14 -51.93 -0.42 1.44 15 26 H 0.05 0.68 7.90 -51.93 -0.41 0.27 15 27 H 0.05 0.63 8.14 -51.93 -0.42 0.20 15 28 H 0.05 0.69 8.14 -51.93 -0.42 0.26 15 LS Contribution 239.13 15.07 3.60 3.60 Total: -1.00 -29.94 239.13 -6.76 -36.70 By element: Atomic # 1 Polarization: 8.68 SS G_CDS: -4.35 Total: 4.33 kcal Atomic # 6 Polarization: -21.50 SS G_CDS: -1.03 Total: -22.53 kcal Atomic # 7 Polarization: -42.75 SS G_CDS: 0.10 Total: -42.65 kcal Atomic # 14 Polarization: 25.63 SS G_CDS: -5.08 Total: 20.54 kcal Total LS contribution 3.60 Total: 3.60 kcal Total: -29.94 -6.76 -36.70 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000052286918.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.488 kcal (2) G-P(sol) polarization free energy of solvation -29.940 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.548 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.763 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.702 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.786 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.10 seconds