Wall clock time and date at job start Mon Mar 30 2020 02:06:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09000 * 109.47336 * 2 1 4 4 C 1.50698 * 109.47523 * 119.99834 * 2 1 3 5 5 H 1.08003 * 119.99707 * 25.56417 * 4 2 1 6 6 C 1.37875 * 120.00307 * 205.55718 * 4 2 1 7 7 N 1.31518 * 120.00005 * 353.57939 * 6 4 2 8 8 Si 1.86800 * 119.99944 * 173.29744 * 6 4 2 9 9 H 1.48494 * 109.47281 * 90.00348 * 8 6 4 10 10 H 1.48507 * 109.47043 * 210.00480 * 8 6 4 11 11 H 1.48499 * 109.47352 * 330.00141 * 8 6 4 12 12 N 1.46901 * 109.47115 * 240.00220 * 2 1 3 13 13 C 1.46893 * 111.00100 * 84.99654 * 12 2 1 14 14 H 1.08993 * 115.55439 * 350.58644 * 13 12 2 15 15 C 1.53005 * 117.49626 * 136.25576 * 13 12 2 16 16 C 1.53004 * 117.49936 * 204.91020 * 13 12 2 17 17 H 1.08996 * 117.49658 * 0.02562 * 16 13 12 18 18 C 1.53003 * 117.49788 * 145.02024 * 16 13 12 19 19 H 1.08997 * 109.46828 * 177.11866 * 1 2 3 20 20 H 1.09004 * 109.46711 * 297.11577 * 1 2 3 21 21 H 1.08992 * 109.47019 * 57.11191 * 1 2 3 22 22 H 0.96993 * 119.99658 * 354.30389 * 7 6 4 23 23 H 1.00905 * 110.99706 * 321.04536 * 12 2 1 24 24 H 1.09005 * 117.49625 * 214.97996 * 15 13 12 25 25 H 1.08994 * 117.50175 * 359.97120 * 15 13 12 26 26 H 1.08997 * 109.46954 * 60.00529 * 18 16 13 27 27 H 1.09002 * 109.47170 * 180.02562 * 18 16 13 28 28 H 1.09001 * 109.47149 * 300.00698 * 18 16 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0324 -0.7103 1.2304 5 1 1.4169 -1.4551 1.7131 6 6 3.2778 -0.4097 1.7399 7 7 4.0782 0.4020 1.0839 8 14 3.8252 -1.1489 3.3657 9 1 4.5135 -2.4406 3.1154 10 1 4.7581 -0.2144 4.0452 11 1 2.6392 -1.3792 4.2291 12 7 2.0196 -0.6925 -1.1995 13 6 2.0824 0.2226 -2.3469 14 1 1.6209 1.1984 -2.1958 15 6 3.3279 0.1598 -3.2332 16 6 1.9950 -0.3913 -3.7456 17 1 1.8905 -1.4740 -3.8144 18 6 1.2668 0.4119 -4.8253 19 1 -0.3633 -1.0264 -0.0517 20 1 -0.3633 0.4684 0.9148 21 1 -0.3633 0.5580 -0.8629 22 1 3.8276 0.7235 0.2038 23 1 1.4495 -1.4979 -1.4101 24 1 3.6856 1.0943 -3.6655 25 1 4.1010 -0.5601 -2.9647 26 1 1.7653 1.3714 -4.9626 27 1 1.2819 -0.1432 -5.7633 28 1 0.2341 0.5794 -4.5191 RHF calculation, no. of doubly occupied orbitals= 32 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000052286918.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:06:12 Heat of formation + Delta-G solvation = -10.947028 kcal Electronic energy + Delta-G solvation = -9822.651746 eV Core-core repulsion = 8065.902889 eV Total energy + Delta-G solvation = -1756.748856 eV No. of doubly occupied orbitals = 32 Molecular weight (most abundant/longest-lived isotopes) = 169.116 amu Computer time = 0.11 seconds Orbital eigenvalues (eV) -39.24006 -36.54388 -33.61346 -30.32252 -28.37583 -26.58723 -22.98990 -21.94423 -21.45026 -18.79831 -17.05300 -15.89487 -15.61550 -15.02593 -14.70242 -14.26562 -14.05545 -13.57150 -13.11166 -12.89417 -12.70877 -12.55780 -12.27722 -11.92591 -11.73860 -11.38900 -10.86118 -10.57254 -10.42177 -8.79374 -8.47620 -6.26083 1.56004 1.64753 1.82055 2.62678 2.92267 3.13731 3.63959 3.99910 4.04616 4.36910 4.41049 4.47475 4.57908 4.74540 4.75205 4.91278 4.95243 5.01486 5.14176 5.24095 5.28439 5.43060 6.01718 6.27838 6.59711 6.81864 6.86036 7.61740 8.88884 Molecular weight = 169.12amu Principal moments of inertia in cm(-1) A = 0.070958 B = 0.012590 C = 0.011323 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 394.504083 B = 2223.392134 C = 2472.220328 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.191 3.809 3 H 0.007 0.993 4 C -0.600 4.600 5 H 0.042 0.958 6 C -0.022 4.022 7 N -0.930 5.930 8 Si 1.116 2.884 9 H -0.279 1.279 10 H -0.285 1.285 11 H -0.271 1.271 12 N -0.660 5.660 13 C 0.005 3.995 14 H 0.077 0.923 15 C -0.176 4.176 16 C -0.149 4.149 17 H 0.102 0.898 18 C -0.114 4.114 19 H 0.049 0.951 20 H 0.047 0.953 21 H 0.044 0.956 22 H 0.265 0.735 23 H 0.326 0.674 24 H 0.099 0.901 25 H 0.074 0.926 26 H 0.058 0.942 27 H 0.077 0.923 28 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.096 -0.903 -7.452 9.073 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C 0.084 3.916 3 H 0.025 0.975 4 C -0.639 4.639 5 H 0.060 0.940 6 C -0.223 4.223 7 N -0.567 5.567 8 Si 0.938 3.062 9 H -0.205 1.205 10 H -0.210 1.210 11 H -0.196 1.196 12 N -0.291 5.291 13 C -0.105 4.105 14 H 0.095 0.905 15 C -0.214 4.214 16 C -0.168 4.168 17 H 0.120 0.880 18 C -0.171 4.171 19 H 0.068 0.932 20 H 0.066 0.934 21 H 0.063 0.937 22 H 0.075 0.925 23 H 0.145 0.855 24 H 0.117 0.883 25 H 0.092 0.908 26 H 0.077 0.923 27 H 0.096 0.904 28 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -3.242 -0.800 -6.166 7.012 hybrid contribution -1.919 0.157 -1.301 2.324 sum -5.161 -0.643 -7.467 9.100 Atomic orbital electron populations 1.22262 0.97970 1.00573 1.00138 1.19312 0.90487 0.93325 0.88448 0.97475 1.22226 1.04147 1.25986 1.11538 0.93999 1.27174 0.93512 0.95095 1.06498 1.70765 1.39044 1.32153 1.14708 0.82967 0.75905 0.75560 0.71723 1.20533 1.21033 1.19627 1.60959 1.57278 1.08606 1.02230 1.22581 1.02473 0.97080 0.88412 0.90497 1.23233 0.91817 1.02454 1.03926 1.22732 0.99651 0.99738 0.94725 0.87998 1.21349 0.99501 0.99277 0.97002 0.93214 0.93360 0.93715 0.92522 0.85496 0.88315 0.90773 0.92333 0.90447 0.92122 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -6.34 9.15 71.98 0.66 -5.68 15 2 C 0.19 9.79 1.96 44.17 0.09 9.88 15 3 H 0.01 0.41 6.73 -2.39 -0.02 0.39 15 4 C -0.60 -34.35 8.64 25.60 0.22 -34.13 15 5 H 0.04 2.37 7.82 -2.91 -0.02 2.35 15 6 C -0.02 -1.30 5.45 84.65 0.46 -0.84 15 7 N -0.93 -58.46 13.56 21.45 0.29 -58.17 15 8 Si 1.12 51.53 29.91 68.60 2.05 53.58 15 9 H -0.28 -12.36 7.11 99.48 0.71 -11.65 15 10 H -0.28 -13.03 7.11 99.48 0.71 -12.32 15 11 H -0.27 -11.56 7.11 99.48 0.71 -10.85 15 12 N -0.66 -30.81 6.43 -473.32 -3.04 -33.86 15 13 C 0.01 0.22 5.72 44.92 0.26 0.47 15 14 H 0.08 3.11 7.77 -2.39 -0.02 3.10 15 15 C -0.18 -6.35 10.11 30.62 0.31 -6.04 15 16 C -0.15 -4.59 6.21 -10.77 -0.07 -4.65 15 17 H 0.10 3.07 8.14 -2.39 -0.02 3.05 15 18 C -0.11 -2.67 10.19 71.98 0.73 -1.94 15 19 H 0.05 1.98 8.08 -2.39 -0.02 1.96 15 20 H 0.05 2.01 8.14 -2.39 -0.02 1.99 15 21 H 0.04 1.66 8.11 -2.39 -0.02 1.64 15 22 H 0.26 16.94 6.93 -92.71 -0.64 16.30 15 23 H 0.33 14.13 8.39 -89.69 -0.75 13.38 15 24 H 0.10 3.19 8.05 -2.38 -0.02 3.17 15 25 H 0.07 2.96 8.14 -2.39 -0.02 2.94 15 26 H 0.06 1.32 7.90 -2.39 -0.02 1.30 15 27 H 0.08 1.49 8.14 -2.39 -0.02 1.47 15 28 H 0.06 1.36 8.14 -2.39 -0.02 1.34 15 Total: -1.00 -64.25 239.13 2.46 -61.80 By element: Atomic # 1 Polarization: 19.07 SS G_CDS: 0.49 Total: 19.56 kcal Atomic # 6 Polarization: -45.58 SS G_CDS: 2.66 Total: -42.92 kcal Atomic # 7 Polarization: -89.27 SS G_CDS: -2.75 Total: -92.02 kcal Atomic # 14 Polarization: 51.53 SS G_CDS: 2.05 Total: 53.58 kcal Total: -64.25 2.46 -61.80 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000052286918.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.852 kcal (2) G-P(sol) polarization free energy of solvation -64.255 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.402 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.455 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.799 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.947 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.11 seconds