Wall clock time and date at job start Mon Mar 30 2020 02:06:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09002 * 109.47398 * 2 1 4 4 C 1.50699 * 109.47083 * 119.99946 * 2 1 3 5 5 H 1.07999 * 120.00019 * 119.99669 * 4 2 1 6 6 C 1.37877 * 120.00129 * 299.99954 * 4 2 1 7 7 N 1.31519 * 119.99723 * 359.97438 * 6 4 2 8 8 Si 1.86803 * 119.99900 * 179.97438 * 6 4 2 9 9 H 1.48501 * 109.47147 * 90.00197 * 8 6 4 10 10 H 1.48499 * 109.46797 * 209.99607 * 8 6 4 11 11 H 1.48500 * 109.47032 * 329.99738 * 8 6 4 12 12 N 1.46901 * 109.46769 * 239.99705 * 2 1 3 13 13 C 1.46903 * 110.99880 * 85.00797 * 12 2 1 14 14 H 1.08997 * 115.55070 * 9.26902 * 13 12 2 15 15 C 1.53005 * 117.49616 * 223.60883 * 13 12 2 16 16 C 1.53001 * 59.99956 * 252.50499 * 15 13 12 17 17 H 1.08993 * 117.49767 * 252.51367 * 16 15 13 18 18 C 1.52998 * 117.49898 * 107.48592 * 16 15 13 19 19 H 1.08992 * 109.47399 * 179.97438 * 1 2 3 20 20 H 1.09004 * 109.46724 * 300.00478 * 1 2 3 21 21 H 1.09001 * 109.47194 * 59.99819 * 1 2 3 22 22 H 0.97003 * 119.99231 * 179.97438 * 7 6 4 23 23 H 1.00904 * 110.99967 * 208.95457 * 12 2 1 24 24 H 1.09001 * 117.49568 * 359.97438 * 15 13 12 25 25 H 1.09003 * 117.49966 * 144.99074 * 15 13 12 26 26 H 1.09005 * 109.47506 * 351.38078 * 18 16 15 27 27 H 1.08996 * 109.47118 * 111.38275 * 18 16 15 28 28 H 1.09000 * 109.47270 * 231.37825 * 18 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0323 -0.7104 1.2305 5 1 2.6532 -1.5885 1.1314 6 6 1.6993 -0.2393 2.4827 7 7 0.9436 0.8303 2.6034 8 14 2.3214 -1.1204 4.0079 9 1 3.6297 -0.5460 4.4124 10 1 1.3431 -0.9492 5.1120 11 1 2.4857 -2.5663 3.7119 12 7 2.0196 -0.6926 -1.1994 13 6 2.0825 0.2225 -2.3469 14 1 1.9209 1.2758 -2.1176 15 6 1.5682 -0.2946 -3.6919 16 6 3.0705 -0.1140 -3.4656 17 1 3.5593 0.7180 -3.9724 18 6 3.9175 -1.3777 -3.3035 19 1 -0.3634 -1.0276 -0.0005 20 1 -0.3633 0.5139 0.8900 21 1 -0.3634 0.5139 -0.8900 22 1 0.7090 1.1614 3.4844 23 1 2.9173 -1.1206 -1.0287 24 1 1.1835 -1.3140 -3.7254 25 1 1.0683 0.4185 -4.3475 26 1 3.2633 -2.2462 -3.2262 27 1 4.5707 -1.4908 -4.1687 28 1 4.5220 -1.2966 -2.4001 RHF calculation, no. of doubly occupied orbitals= 32 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000052286921.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:06:15 Heat of formation + Delta-G solvation = 13.268643 kcal Electronic energy + Delta-G solvation = -9796.458626 eV Core-core repulsion = 8040.759840 eV Total energy + Delta-G solvation = -1755.698786 eV No. of doubly occupied orbitals = 32 Molecular weight (most abundant/longest-lived isotopes) = 169.116 amu Computer time = 0.10 seconds Orbital eigenvalues (eV) -37.74006 -34.42626 -31.59948 -28.17973 -27.37477 -25.09727 -21.14214 -20.28295 -19.12421 -16.49601 -15.38733 -14.59303 -14.20908 -13.53085 -12.64716 -12.60208 -12.15383 -11.65241 -11.29078 -11.01963 -10.91754 -10.70858 -10.53841 -10.17413 -10.08026 -9.77734 -9.29285 -8.78657 -8.44403 -7.16781 -6.01995 -4.08583 3.29868 3.36436 3.40480 4.33348 4.40396 5.03664 5.25458 5.29795 5.48320 5.67533 5.94509 6.14579 6.20357 6.25164 6.31817 6.53044 6.71667 6.92591 7.19958 7.27176 7.55449 7.79411 7.91982 8.28403 8.42427 8.68910 9.02423 9.57325 11.04393 Molecular weight = 169.12amu Principal moments of inertia in cm(-1) A = 0.070055 B = 0.012231 C = 0.010947 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 399.589145 B = 2288.696399 C = 2557.195826 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C 0.212 3.788 3 H 0.003 0.997 4 C -0.520 4.520 5 H 0.059 0.941 6 C 0.062 3.938 7 N -0.890 5.890 8 Si 0.897 3.103 9 H -0.281 1.281 10 H -0.286 1.286 11 H -0.273 1.273 12 N -0.657 5.657 13 C 0.037 3.963 14 H 0.089 0.911 15 C -0.176 4.176 16 C -0.181 4.181 17 H 0.093 0.907 18 C -0.116 4.116 19 H 0.030 0.970 20 H 0.080 0.920 21 H 0.005 0.995 22 H 0.261 0.739 23 H 0.334 0.666 24 H 0.093 0.907 25 H 0.082 0.918 26 H 0.060 0.940 27 H 0.050 0.950 28 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.973 -1.491 -7.560 8.260 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C 0.105 3.895 3 H 0.020 0.980 4 C -0.558 4.558 5 H 0.077 0.923 6 C -0.140 4.140 7 N -0.529 5.529 8 Si 0.725 3.275 9 H -0.207 1.207 10 H -0.212 1.212 11 H -0.198 1.198 12 N -0.289 5.289 13 C -0.074 4.074 14 H 0.107 0.893 15 C -0.215 4.215 16 C -0.201 4.201 17 H 0.111 0.889 18 C -0.173 4.173 19 H 0.049 0.951 20 H 0.098 0.902 21 H 0.024 0.976 22 H 0.071 0.929 23 H 0.154 0.846 24 H 0.112 0.888 25 H 0.101 0.899 26 H 0.079 0.921 27 H 0.069 0.931 28 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 2.267 -1.633 -7.544 8.045 hybrid contribution 0.982 0.183 1.036 1.439 sum 3.249 -1.450 -6.508 7.417 Atomic orbital electron populations 1.21698 0.97786 0.99314 0.99362 1.19177 0.92732 0.92318 0.85318 0.97984 1.21271 1.31485 1.12549 0.90525 0.92263 1.24922 0.95020 0.95014 0.99046 1.69908 1.36594 1.22914 1.23457 0.86514 0.78465 0.80072 0.82458 1.20744 1.21173 1.19834 1.60477 1.31421 1.31547 1.05424 1.22552 1.01201 0.95792 0.87893 0.89292 1.23191 0.95023 1.02441 1.00846 1.22578 0.91973 1.00014 1.05504 0.88889 1.21195 0.99059 0.96237 1.00847 0.95056 0.90174 0.97556 0.92919 0.84608 0.88849 0.89931 0.92063 0.93070 0.92458 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -3.17 9.19 37.16 0.34 -2.83 15 2 C 0.21 5.53 2.56 -68.86 -0.18 5.35 15 3 H 0.00 0.07 7.57 -51.93 -0.39 -0.32 15 4 C -0.52 -14.51 8.59 -34.44 -0.30 -14.80 15 5 H 0.06 1.63 7.62 -52.49 -0.40 1.23 15 6 C 0.06 1.73 5.30 -17.82 -0.09 1.63 15 7 N -0.89 -25.75 11.32 55.43 0.63 -25.12 15 8 Si 0.90 21.42 29.54 -169.99 -5.02 16.40 15 9 H -0.28 -6.63 7.11 56.52 0.40 -6.23 15 10 H -0.29 -6.78 7.11 56.52 0.40 -6.37 15 11 H -0.27 -6.46 7.11 56.52 0.40 -6.06 15 12 N -0.66 -14.62 6.36 -100.95 -0.64 -15.26 15 13 C 0.04 0.72 6.02 -67.71 -0.41 0.31 15 14 H 0.09 1.78 7.60 -51.93 -0.39 1.38 15 15 C -0.18 -2.88 10.10 -26.73 -0.27 -3.15 15 16 C -0.18 -2.83 6.41 -90.62 -0.58 -3.41 15 17 H 0.09 1.32 8.14 -51.93 -0.42 0.89 15 18 C -0.12 -1.67 9.12 37.16 0.34 -1.33 15 19 H 0.03 0.79 8.14 -51.93 -0.42 0.37 15 20 H 0.08 2.22 6.07 -51.93 -0.32 1.90 15 21 H 0.01 0.13 8.07 -51.93 -0.42 -0.29 15 22 H 0.26 7.16 8.31 -40.82 -0.34 6.82 15 23 H 0.33 7.22 6.69 -39.29 -0.26 6.96 15 24 H 0.09 1.56 8.05 -51.93 -0.42 1.14 15 25 H 0.08 1.20 8.14 -51.93 -0.42 0.78 15 26 H 0.06 0.91 7.90 -51.93 -0.41 0.50 15 27 H 0.05 0.62 8.14 -51.93 -0.42 0.20 15 28 H 0.06 0.84 7.59 -51.93 -0.39 0.45 15 LS Contribution 233.88 15.07 3.52 3.52 Total: -1.00 -28.46 233.88 -6.89 -35.35 By element: Atomic # 1 Polarization: 7.57 SS G_CDS: -4.23 Total: 3.34 kcal Atomic # 6 Polarization: -17.08 SS G_CDS: -1.14 Total: -18.23 kcal Atomic # 7 Polarization: -40.37 SS G_CDS: -0.01 Total: -40.38 kcal Atomic # 14 Polarization: 21.42 SS G_CDS: -5.02 Total: 16.40 kcal Total LS contribution 3.52 Total: 3.52 kcal Total: -28.46 -6.89 -35.35 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000052286921.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.614 kcal (2) G-P(sol) polarization free energy of solvation -28.457 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.157 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.888 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.346 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.269 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.10 seconds