Wall clock time and date at job start Mon Mar 30 2020 02:06:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09002 * 109.47398 * 2 1 4 4 C 1.50699 * 109.47083 * 119.99946 * 2 1 3 5 5 H 1.07999 * 120.00019 * 119.99669 * 4 2 1 6 6 C 1.37877 * 120.00129 * 299.99954 * 4 2 1 7 7 N 1.31519 * 119.99723 * 359.97438 * 6 4 2 8 8 Si 1.86803 * 119.99900 * 179.97438 * 6 4 2 9 9 H 1.48501 * 109.47147 * 90.00197 * 8 6 4 10 10 H 1.48499 * 109.46797 * 209.99607 * 8 6 4 11 11 H 1.48500 * 109.47032 * 329.99738 * 8 6 4 12 12 N 1.46901 * 109.46769 * 239.99705 * 2 1 3 13 13 C 1.46903 * 110.99880 * 85.00797 * 12 2 1 14 14 H 1.08997 * 115.55070 * 9.26902 * 13 12 2 15 15 C 1.53005 * 117.49616 * 223.60883 * 13 12 2 16 16 C 1.53001 * 59.99956 * 252.50499 * 15 13 12 17 17 H 1.08993 * 117.49767 * 252.51367 * 16 15 13 18 18 C 1.52998 * 117.49898 * 107.48592 * 16 15 13 19 19 H 1.08992 * 109.47399 * 179.97438 * 1 2 3 20 20 H 1.09004 * 109.46724 * 300.00478 * 1 2 3 21 21 H 1.09001 * 109.47194 * 59.99819 * 1 2 3 22 22 H 0.97003 * 119.99231 * 179.97438 * 7 6 4 23 23 H 1.00904 * 110.99967 * 208.95457 * 12 2 1 24 24 H 1.09001 * 117.49568 * 359.97438 * 15 13 12 25 25 H 1.09003 * 117.49966 * 144.99074 * 15 13 12 26 26 H 1.09005 * 109.47506 * 351.38078 * 18 16 15 27 27 H 1.08996 * 109.47118 * 111.38275 * 18 16 15 28 28 H 1.09000 * 109.47270 * 231.37825 * 18 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0323 -0.7104 1.2305 5 1 2.6532 -1.5885 1.1314 6 6 1.6993 -0.2393 2.4827 7 7 0.9436 0.8303 2.6034 8 14 2.3214 -1.1204 4.0079 9 1 3.6297 -0.5460 4.4124 10 1 1.3431 -0.9492 5.1120 11 1 2.4857 -2.5663 3.7119 12 7 2.0196 -0.6926 -1.1994 13 6 2.0825 0.2225 -2.3469 14 1 1.9209 1.2758 -2.1176 15 6 1.5682 -0.2946 -3.6919 16 6 3.0705 -0.1140 -3.4656 17 1 3.5593 0.7180 -3.9724 18 6 3.9175 -1.3777 -3.3035 19 1 -0.3634 -1.0276 -0.0005 20 1 -0.3633 0.5139 0.8900 21 1 -0.3634 0.5139 -0.8900 22 1 0.7090 1.1614 3.4844 23 1 2.9173 -1.1206 -1.0287 24 1 1.1835 -1.3140 -3.7254 25 1 1.0683 0.4185 -4.3475 26 1 3.2633 -2.2462 -3.2262 27 1 4.5707 -1.4908 -4.1687 28 1 4.5220 -1.2966 -2.4001 RHF calculation, no. of doubly occupied orbitals= 32 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000052286921.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:06:15 Heat of formation + Delta-G solvation = -4.777542 kcal Electronic energy + Delta-G solvation = -9797.241167 eV Core-core repulsion = 8040.759840 eV Total energy + Delta-G solvation = -1756.481327 eV No. of doubly occupied orbitals = 32 Molecular weight (most abundant/longest-lived isotopes) = 169.116 amu Computer time = 0.11 seconds Orbital eigenvalues (eV) -39.22983 -36.34009 -33.59091 -29.69547 -29.01987 -27.24281 -22.70097 -22.00469 -20.68214 -18.50653 -17.09701 -16.34168 -15.88574 -15.35181 -14.48252 -13.92396 -13.76167 -13.26559 -13.01725 -12.83424 -12.53019 -12.41811 -12.24913 -12.20842 -12.02715 -11.35822 -10.94107 -10.62964 -10.55010 -8.91956 -8.14870 -6.29815 1.41777 1.43024 1.54048 2.40720 2.97779 3.13551 3.48595 3.94638 4.16575 4.44680 4.51398 4.76012 4.84898 4.96819 4.99174 5.07630 5.12168 5.20931 5.24553 5.48491 5.51511 5.67038 5.84862 6.19548 6.47338 6.77593 6.98636 7.40928 8.91126 Molecular weight = 169.12amu Principal moments of inertia in cm(-1) A = 0.070055 B = 0.012231 C = 0.010947 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 399.589145 B = 2288.696399 C = 2557.195826 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 C 0.216 3.784 3 H -0.031 1.031 4 C -0.541 4.541 5 H 0.059 0.941 6 C 0.012 3.988 7 N -0.919 5.919 8 Si 0.966 3.034 9 H -0.274 1.274 10 H -0.282 1.282 11 H -0.267 1.267 12 N -0.655 5.655 13 C -0.005 4.005 14 H 0.074 0.926 15 C -0.161 4.161 16 C -0.157 4.157 17 H 0.115 0.885 18 C -0.117 4.117 19 H 0.027 0.973 20 H 0.057 0.943 21 H 0.020 0.980 22 H 0.263 0.737 23 H 0.334 0.666 24 H 0.091 0.909 25 H 0.103 0.897 26 H 0.054 0.946 27 H 0.079 0.921 28 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.754 -2.256 -8.319 9.402 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.108 3.892 3 H -0.013 1.013 4 C -0.579 4.579 5 H 0.077 0.923 6 C -0.187 4.187 7 N -0.558 5.558 8 Si 0.791 3.209 9 H -0.200 1.200 10 H -0.207 1.207 11 H -0.192 1.192 12 N -0.286 5.286 13 C -0.116 4.116 14 H 0.092 0.908 15 C -0.199 4.199 16 C -0.176 4.176 17 H 0.133 0.867 18 C -0.174 4.174 19 H 0.046 0.954 20 H 0.076 0.924 21 H 0.039 0.961 22 H 0.072 0.928 23 H 0.153 0.847 24 H 0.109 0.891 25 H 0.122 0.878 26 H 0.073 0.927 27 H 0.098 0.902 28 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 3.052 -2.400 -8.330 9.190 hybrid contribution 0.742 0.455 1.200 1.483 sum 3.794 -1.945 -7.130 8.307 Atomic orbital electron populations 1.21516 0.97730 0.98766 0.98901 1.18968 0.92780 0.90705 0.86744 1.01338 1.21593 1.31870 1.12806 0.91656 0.92251 1.25776 0.95074 0.95687 1.02162 1.70036 1.37387 1.24109 1.24267 0.85439 0.78030 0.79024 0.78424 1.19967 1.20738 1.19172 1.60407 1.31543 1.31860 1.04782 1.22575 1.06197 0.94724 0.88139 0.90830 1.23243 0.95896 1.02585 0.98225 1.22727 0.91902 1.01013 1.01971 0.86735 1.21236 0.99093 0.95192 1.01883 0.95419 0.92425 0.96144 0.92754 0.84662 0.89092 0.87825 0.92740 0.90184 0.93080 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -5.79 9.19 71.98 0.66 -5.12 15 2 C 0.22 11.52 2.56 44.17 0.11 11.63 15 3 H -0.03 -1.81 7.57 -2.39 -0.02 -1.83 15 4 C -0.54 -30.49 8.59 25.60 0.22 -30.27 15 5 H 0.06 3.26 7.62 -2.91 -0.02 3.24 15 6 C 0.01 0.69 5.30 84.65 0.45 1.13 15 7 N -0.92 -53.87 11.32 21.45 0.24 -53.63 15 8 Si 0.97 43.85 29.54 68.60 2.03 45.87 15 9 H -0.27 -12.06 7.11 99.48 0.71 -11.35 15 10 H -0.28 -12.53 7.11 99.48 0.71 -11.82 15 11 H -0.27 -11.78 7.11 99.48 0.71 -11.07 15 12 N -0.65 -29.18 6.36 -473.29 -3.01 -32.19 15 13 C -0.01 -0.19 6.02 44.92 0.27 0.08 15 14 H 0.07 2.98 7.60 -2.39 -0.02 2.97 15 15 C -0.16 -4.89 10.10 30.60 0.31 -4.58 15 16 C -0.16 -4.51 6.41 -10.79 -0.07 -4.58 15 17 H 0.11 2.84 8.14 -2.39 -0.02 2.82 15 18 C -0.12 -3.05 9.12 71.98 0.66 -2.39 15 19 H 0.03 1.40 8.14 -2.39 -0.02 1.38 15 20 H 0.06 3.26 6.07 -2.39 -0.01 3.24 15 21 H 0.02 0.95 8.07 -2.39 -0.02 0.93 15 22 H 0.26 14.57 8.31 -92.71 -0.77 13.80 15 23 H 0.33 14.44 6.69 -89.69 -0.60 13.84 15 24 H 0.09 2.83 8.05 -2.39 -0.02 2.81 15 25 H 0.10 2.70 8.14 -2.39 -0.02 2.68 15 26 H 0.05 1.50 7.90 -2.38 -0.02 1.48 15 27 H 0.08 1.65 8.14 -2.39 -0.02 1.63 15 28 H 0.05 1.40 7.59 -2.39 -0.02 1.39 15 Total: -1.00 -60.30 233.88 2.39 -57.91 By element: Atomic # 1 Polarization: 15.61 SS G_CDS: 0.52 Total: 16.14 kcal Atomic # 6 Polarization: -36.71 SS G_CDS: 2.61 Total: -34.10 kcal Atomic # 7 Polarization: -83.05 SS G_CDS: -2.77 Total: -85.82 kcal Atomic # 14 Polarization: 43.85 SS G_CDS: 2.03 Total: 45.87 kcal Total: -60.30 2.39 -57.91 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000052286921.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.131 kcal (2) G-P(sol) polarization free energy of solvation -60.301 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.171 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.393 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.908 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.778 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.11 seconds