Wall clock time and date at job start Mon Mar 30 2020 02:06:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.08997 * 115.55171 * 2 1 4 4 C 1.53005 * 117.51771 * 214.29595 * 2 1 3 5 5 C 1.53002 * 60.00085 * 252.52145 * 4 2 1 6 6 H 1.08997 * 117.51353 * 252.52013 * 5 4 2 7 7 N 1.46892 * 117.49867 * 107.49073 * 5 4 2 8 8 C 1.46898 * 111.00019 * 136.37925 * 7 5 4 9 9 C 1.53003 * 109.47063 * 179.97438 * 8 7 5 10 10 C 1.50703 * 109.47038 * 179.97438 * 9 8 7 11 11 H 1.08006 * 120.00159 * 359.97438 * 10 9 8 12 12 C 1.37877 * 120.00120 * 180.02562 * 10 9 8 13 13 N 1.31514 * 120.00089 * 359.97438 * 12 10 9 14 14 Si 1.86798 * 119.99938 * 180.02562 * 12 10 9 15 15 H 1.48506 * 109.47297 * 269.99556 * 14 12 10 16 16 H 1.48503 * 109.47261 * 149.99737 * 14 12 10 17 17 H 1.48500 * 109.47454 * 29.99730 * 14 12 10 18 18 H 1.09004 * 109.47518 * 274.33237 * 1 2 3 19 19 H 1.09001 * 109.47111 * 34.33281 * 1 2 3 20 20 H 1.08999 * 109.47088 * 154.33060 * 1 2 3 21 21 H 1.08999 * 117.49699 * 145.02705 * 4 2 1 22 22 H 1.09003 * 117.49315 * 0.02562 * 4 2 1 23 23 H 1.00899 * 111.00308 * 12.41788 * 7 5 4 24 24 H 1.08996 * 109.47442 * 59.99876 * 8 7 5 25 25 H 1.08996 * 109.46826 * 299.99874 * 8 7 5 26 26 H 1.09003 * 109.46825 * 60.00196 * 9 8 7 27 27 H 1.08996 * 109.47396 * 299.99770 * 9 8 7 28 28 H 0.96998 * 119.99255 * 0.02562 * 13 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 2.0001 0.9834 0.0000 4 6 2.2369 -1.1210 -0.7646 5 6 2.2364 -1.1208 0.7654 6 1 3.1711 -0.8746 1.2692 7 7 1.3938 -2.1147 1.4436 8 6 2.1097 -2.7327 2.5676 9 6 1.2018 -3.7594 3.2478 10 6 1.9364 -4.3939 4.4006 11 1 2.9497 -4.0951 4.6253 12 6 1.3154 -5.3566 5.1678 13 7 0.0817 -5.7208 4.8939 14 14 2.2258 -6.1425 6.5970 15 1 2.9522 -7.3464 6.1193 16 1 1.2527 -6.5359 7.6475 17 1 3.1963 -5.1700 7.1607 18 1 -0.3634 0.0776 1.0247 19 1 -0.3633 0.8486 -0.5796 20 1 -0.3633 -0.9262 -0.4452 21 1 3.1720 -0.8751 -1.2677 22 1 1.6118 -1.8585 -1.2681 23 1 1.0665 -2.8145 0.7946 24 1 2.3902 -1.9633 3.2868 25 1 3.0069 -3.2291 2.1980 26 1 0.9209 -4.5289 2.5287 27 1 0.3047 -3.2627 3.6175 28 1 -0.3910 -5.3124 4.1519 RHF calculation, no. of doubly occupied orbitals= 32 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000052288187.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:06:08 Heat of formation + Delta-G solvation = 2.170069 kcal Electronic energy + Delta-G solvation = -9435.755102 eV Core-core repulsion = 7679.575046 eV Total energy + Delta-G solvation = -1756.180056 eV No. of doubly occupied orbitals = 32 Molecular weight (most abundant/longest-lived isotopes) = 169.116 amu Computer time = 0.11 seconds Orbital eigenvalues (eV) -38.08832 -34.54351 -32.46419 -28.71739 -27.62908 -23.68876 -21.64402 -20.92526 -19.68623 -16.66900 -15.79755 -14.93918 -13.97187 -13.72208 -13.38014 -12.82942 -12.27511 -12.19645 -11.90341 -11.36318 -11.29414 -10.91485 -10.56702 -10.11850 -9.99882 -9.94723 -9.52254 -8.56877 -8.30558 -7.72963 -6.34736 -4.03520 3.44556 3.48735 3.64500 3.96240 4.47227 4.62776 4.96578 5.05465 5.35373 5.43512 5.51710 5.80990 5.91298 5.99564 6.09304 6.21916 6.23721 6.32168 6.54706 6.82208 7.28707 7.50461 7.69548 7.84493 8.25665 8.48323 8.90474 9.69090 11.06561 Molecular weight = 169.12amu Principal moments of inertia in cm(-1) A = 0.105226 B = 0.008456 C = 0.008120 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 266.029492 B = 3310.340421 C = 3447.394554 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.108 4.108 2 C -0.152 4.152 3 H 0.098 0.902 4 C -0.210 4.210 5 C 0.032 3.968 6 H 0.103 0.897 7 N -0.659 5.659 8 C 0.074 3.926 9 C 0.011 3.989 10 C -0.603 4.603 11 H 0.048 0.952 12 C 0.015 3.985 13 N -0.913 5.913 14 Si 1.073 2.927 15 H -0.288 1.288 16 H -0.284 1.284 17 H -0.289 1.289 18 H 0.065 0.935 19 H 0.046 0.954 20 H 0.052 0.948 21 H 0.088 0.912 22 H 0.092 0.908 23 H 0.337 0.663 24 H 0.061 0.939 25 H 0.019 0.981 26 H 0.004 0.996 27 H 0.017 0.983 28 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.344 8.078 -8.240 12.014 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C -0.171 4.171 3 H 0.116 0.884 4 C -0.249 4.249 5 C -0.080 4.080 6 H 0.121 0.879 7 N -0.288 5.288 8 C -0.054 4.054 9 C -0.026 4.026 10 C -0.642 4.642 11 H 0.067 0.933 12 C -0.189 4.189 13 N -0.549 5.549 14 Si 0.901 3.099 15 H -0.215 1.215 16 H -0.210 1.210 17 H -0.215 1.215 18 H 0.084 0.916 19 H 0.065 0.935 20 H 0.072 0.928 21 H 0.107 0.893 22 H 0.111 0.889 23 H 0.156 0.844 24 H 0.080 0.920 25 H 0.037 0.963 26 H 0.023 0.977 27 H 0.035 0.965 28 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 2.875 7.405 -6.596 10.325 hybrid contribution 0.866 0.603 -1.814 2.098 sum 3.741 8.008 -8.410 12.200 Atomic orbital electron populations 1.21127 0.92588 1.00706 1.02146 1.22527 0.96043 0.93948 1.04605 0.88427 1.23559 1.02531 1.02888 0.95893 1.22528 0.96898 0.97952 0.90610 0.87880 1.60296 1.38233 1.18298 1.11960 1.22063 0.95568 0.96888 0.90908 1.19211 0.95468 0.92690 0.95245 1.22017 1.01551 1.24985 1.15632 0.93347 1.25851 0.96484 0.95307 1.01234 1.70740 1.10946 1.42947 1.30299 0.83495 0.74994 0.75777 0.75618 1.21512 1.20953 1.21490 0.91582 0.93476 0.92848 0.89335 0.88941 0.84437 0.92032 0.96261 0.97747 0.96493 0.91983 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.43 9.64 37.16 0.36 -1.07 15 2 C -0.15 -2.02 6.41 -90.62 -0.58 -2.60 15 3 H 0.10 1.16 8.14 -51.93 -0.42 0.74 15 4 C -0.21 -2.71 9.88 -26.73 -0.26 -2.98 15 5 C 0.03 0.49 6.29 -67.71 -0.43 0.06 15 6 H 0.10 1.57 7.90 -51.93 -0.41 1.16 15 7 N -0.66 -12.18 6.15 -106.73 -0.66 -12.84 15 8 C 0.07 1.61 5.48 -3.82 -0.02 1.59 15 9 C 0.01 0.30 4.55 -27.88 -0.13 0.17 15 10 C -0.60 -17.62 9.11 -34.44 -0.31 -17.93 15 11 H 0.05 1.39 7.74 -52.48 -0.41 0.98 15 12 C 0.02 0.44 5.46 -17.82 -0.10 0.35 15 13 N -0.91 -28.55 13.65 55.43 0.76 -27.79 15 14 Si 1.07 25.73 29.90 -169.99 -5.08 20.65 15 15 H -0.29 -6.64 7.11 56.52 0.40 -6.24 15 16 H -0.28 -6.75 7.11 56.52 0.40 -6.35 15 17 H -0.29 -6.58 7.11 56.52 0.40 -6.18 15 18 H 0.07 0.96 8.14 -51.93 -0.42 0.54 15 19 H 0.05 0.52 8.14 -51.93 -0.42 0.10 15 20 H 0.05 0.71 7.90 -51.93 -0.41 0.30 15 21 H 0.09 1.01 8.14 -51.93 -0.42 0.59 15 22 H 0.09 1.18 8.00 -51.93 -0.42 0.76 15 23 H 0.34 6.02 8.52 -39.29 -0.33 5.69 15 24 H 0.06 1.36 8.14 -51.93 -0.42 0.94 15 25 H 0.02 0.41 8.14 -51.93 -0.42 -0.01 15 26 H 0.00 0.12 8.01 -51.93 -0.42 -0.30 15 27 H 0.02 0.47 8.01 -51.93 -0.42 0.06 15 28 H 0.27 8.42 7.22 -40.82 -0.29 8.13 15 LS Contribution 239.97 15.07 3.62 3.62 Total: -1.00 -30.59 239.97 -7.27 -37.86 By element: Atomic # 1 Polarization: 5.34 SS G_CDS: -4.44 Total: 0.91 kcal Atomic # 6 Polarization: -20.94 SS G_CDS: -1.47 Total: -22.41 kcal Atomic # 7 Polarization: -40.73 SS G_CDS: 0.10 Total: -40.63 kcal Atomic # 14 Polarization: 25.73 SS G_CDS: -5.08 Total: 20.65 kcal Total LS contribution 3.62 Total: 3.62 kcal Total: -30.59 -7.27 -37.86 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000052288187.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.034 kcal (2) G-P(sol) polarization free energy of solvation -30.591 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.442 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.272 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.863 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.170 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.11 seconds