Wall clock time and date at job start Mon Mar 30 2020 02:06:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09000 * 115.55516 * 2 1 4 4 C 1.52998 * 117.50083 * 214.31719 * 2 1 3 5 5 C 1.53000 * 117.49997 * 145.69085 * 2 1 3 6 6 H 1.08994 * 117.51868 * 0.02562 * 5 2 1 7 7 N 1.46898 * 117.49614 * 214.98011 * 5 2 1 8 8 C 1.46906 * 110.99888 * 154.98994 * 7 5 2 9 9 C 1.52999 * 109.46897 * 180.02562 * 8 7 5 10 10 C 1.50706 * 109.46573 * 179.97438 * 9 8 7 11 11 H 1.07995 * 120.00167 * 359.72054 * 10 9 8 12 12 C 1.37879 * 119.99394 * 179.97438 * 10 9 8 13 13 N 1.31514 * 120.00338 * 0.02562 * 12 10 9 14 14 Si 1.86800 * 119.99424 * 180.02562 * 12 10 9 15 15 H 1.48490 * 109.47405 * 60.00219 * 14 12 10 16 16 H 1.48503 * 109.46845 * 180.02562 * 14 12 10 17 17 H 1.48503 * 109.47399 * 299.99813 * 14 12 10 18 18 H 1.08999 * 109.46857 * 274.29927 * 1 2 3 19 19 H 1.08994 * 109.47451 * 34.31008 * 1 2 3 20 20 H 1.09002 * 109.46708 * 154.31052 * 1 2 3 21 21 H 1.08994 * 117.49646 * 145.02131 * 4 2 1 22 22 H 1.09001 * 117.51709 * 359.97438 * 4 2 1 23 23 H 1.00896 * 111.00084 * 278.94404 * 7 5 2 24 24 H 1.09000 * 109.47033 * 59.99886 * 8 7 5 25 25 H 1.09001 * 109.46544 * 299.99942 * 8 7 5 26 26 H 1.09000 * 109.47486 * 60.00024 * 9 8 7 27 27 H 1.09001 * 109.47362 * 299.99301 * 9 8 7 28 28 H 0.96996 * 119.99730 * 179.97438 * 13 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 2.0003 0.9834 0.0000 4 6 2.2365 -1.1209 -0.7651 5 6 2.2365 -1.1210 0.7650 6 1 1.6117 -1.8589 1.2680 7 7 3.4967 -0.7896 1.4432 8 6 3.7455 -1.7024 2.5671 9 6 5.0633 -1.3263 3.2474 10 6 5.3181 -2.2623 4.4007 11 1 4.6087 -3.0441 4.6286 12 6 6.4544 -2.1172 5.1681 13 7 7.3156 -1.1618 4.8939 14 14 6.7707 -3.2779 6.5972 15 1 6.8536 -4.6723 6.0934 16 1 8.0496 -2.9128 7.2576 17 1 5.6599 -3.1708 7.5771 18 1 -0.3633 0.0770 1.0248 19 1 -0.3634 0.8488 -0.5792 20 1 -0.3633 -0.9261 -0.4455 21 1 3.1716 -0.8749 -1.2683 22 1 1.6116 -1.8587 -1.2682 23 1 4.2692 -0.7962 0.7942 24 1 3.8063 -2.7259 2.1972 25 1 2.9302 -1.6237 3.2863 26 1 5.0021 -0.3028 3.6173 27 1 5.8788 -1.4047 2.5284 28 1 8.1147 -1.0596 5.4340 RHF calculation, no. of doubly occupied orbitals= 32 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000052288191.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:06:10 Heat of formation + Delta-G solvation = 5.493005 kcal Electronic energy + Delta-G solvation = -9315.548798 eV Core-core repulsion = 7559.512835 eV Total energy + Delta-G solvation = -1756.035963 eV No. of doubly occupied orbitals = 32 Molecular weight (most abundant/longest-lived isotopes) = 169.116 amu Computer time = 0.09 seconds Orbital eigenvalues (eV) -37.96635 -34.39092 -32.40406 -29.17598 -27.46579 -23.97574 -21.33546 -20.69345 -19.99292 -16.38957 -15.36029 -14.90814 -14.37373 -13.86933 -13.18519 -12.79593 -12.59412 -12.06222 -11.77674 -11.32707 -11.16407 -10.92193 -10.65716 -10.43967 -9.96749 -9.81628 -9.27218 -9.13960 -8.33883 -7.63600 -5.98696 -4.01475 3.34435 3.38587 3.41043 4.00557 4.41713 4.59307 5.04208 5.16475 5.33233 5.37147 5.51713 5.78231 5.86600 5.88453 6.05863 6.14432 6.34449 6.42252 6.48869 6.97657 7.51597 7.73320 7.83268 7.95726 8.09042 8.44108 9.05431 9.62147 11.12802 Molecular weight = 169.12amu Principal moments of inertia in cm(-1) A = 0.114053 B = 0.007837 C = 0.007653 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 245.441516 B = 3572.129805 C = 3657.655196 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C -0.154 4.154 3 H 0.104 0.896 4 C -0.209 4.209 5 C 0.034 3.966 6 H 0.103 0.897 7 N -0.662 5.662 8 C 0.067 3.933 9 C 0.024 3.976 10 C -0.522 4.522 11 H 0.054 0.946 12 C 0.058 3.942 13 N -0.894 5.894 14 Si 0.894 3.106 15 H -0.277 1.277 16 H -0.287 1.287 17 H -0.276 1.276 18 H 0.059 0.941 19 H 0.056 0.944 20 H 0.051 0.949 21 H 0.092 0.908 22 H 0.089 0.911 23 H 0.338 0.662 24 H 0.018 0.982 25 H 0.059 0.941 26 H 0.025 0.975 27 H 0.014 0.986 28 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.360 -0.019 -8.151 12.411 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C -0.173 4.173 3 H 0.123 0.877 4 C -0.248 4.248 5 C -0.077 4.077 6 H 0.121 0.879 7 N -0.291 5.291 8 C -0.061 4.061 9 C -0.013 4.013 10 C -0.561 4.561 11 H 0.072 0.928 12 C -0.144 4.144 13 N -0.533 5.533 14 Si 0.722 3.278 15 H -0.203 1.203 16 H -0.213 1.213 17 H -0.202 1.202 18 H 0.078 0.922 19 H 0.075 0.925 20 H 0.070 0.930 21 H 0.110 0.890 22 H 0.107 0.893 23 H 0.157 0.843 24 H 0.036 0.964 25 H 0.078 0.922 26 H 0.044 0.956 27 H 0.032 0.968 28 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -9.446 0.538 -7.665 12.177 hybrid contribution 0.539 -1.383 0.283 1.511 sum -8.907 -0.845 -7.383 11.600 Atomic orbital electron populations 1.21322 0.93295 1.01298 1.01690 1.22532 0.94576 0.95440 1.04774 0.87749 1.23578 1.02897 1.02307 0.96022 1.22565 0.95407 0.99217 0.90529 0.87901 1.60327 1.02629 1.54071 1.12076 1.22218 1.01121 0.91855 0.90922 1.19083 0.89889 0.97562 0.94807 1.21135 1.06144 1.15229 1.13615 0.92762 1.25007 0.96136 0.95562 0.97660 1.69963 1.11557 1.31877 1.39885 0.86631 0.77467 0.81187 0.82540 1.20283 1.21259 1.20207 0.92241 0.92533 0.92972 0.89004 0.89288 0.84291 0.96398 0.92206 0.95620 0.96767 0.92915 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.32 10.19 37.16 0.38 -0.94 15 2 C -0.15 -2.07 6.33 -90.62 -0.57 -2.65 15 3 H 0.10 1.47 8.14 -51.93 -0.42 1.05 15 4 C -0.21 -2.72 9.88 -26.73 -0.26 -2.99 15 5 C 0.03 0.54 6.03 -67.71 -0.41 0.13 15 6 H 0.10 1.59 7.90 -51.93 -0.41 1.18 15 7 N -0.66 -12.50 6.78 -106.72 -0.72 -13.22 15 8 C 0.07 1.46 5.48 -3.82 -0.02 1.44 15 9 C 0.02 0.64 5.23 -27.88 -0.15 0.50 15 10 C -0.52 -15.08 9.11 -34.44 -0.31 -15.39 15 11 H 0.05 1.51 7.74 -52.49 -0.41 1.10 15 12 C 0.06 1.68 5.46 -17.82 -0.10 1.59 15 13 N -0.89 -27.27 13.29 55.43 0.74 -26.53 15 14 Si 0.89 21.88 29.54 -169.99 -5.02 16.86 15 15 H -0.28 -6.64 7.11 56.52 0.40 -6.24 15 16 H -0.29 -6.93 7.11 56.52 0.40 -6.53 15 17 H -0.28 -6.64 7.11 56.52 0.40 -6.24 15 18 H 0.06 0.66 8.14 -51.93 -0.42 0.24 15 19 H 0.06 0.55 8.14 -51.93 -0.42 0.13 15 20 H 0.05 0.53 7.90 -51.93 -0.41 0.12 15 21 H 0.09 1.17 8.09 -51.93 -0.42 0.75 15 22 H 0.09 1.03 8.05 -51.93 -0.42 0.61 15 23 H 0.34 6.14 8.52 -39.29 -0.33 5.80 15 24 H 0.02 0.38 8.14 -51.93 -0.42 -0.04 15 25 H 0.06 1.31 8.14 -51.93 -0.42 0.89 15 26 H 0.03 0.74 8.14 -51.93 -0.42 0.31 15 27 H 0.01 0.39 8.14 -51.93 -0.42 -0.03 15 28 H 0.26 7.51 8.31 -40.82 -0.34 7.17 15 LS Contribution 242.13 15.07 3.65 3.65 Total: -1.00 -30.00 242.13 -7.30 -37.30 By element: Atomic # 1 Polarization: 4.76 SS G_CDS: -4.49 Total: 0.27 kcal Atomic # 6 Polarization: -16.87 SS G_CDS: -1.45 Total: -18.32 kcal Atomic # 7 Polarization: -39.77 SS G_CDS: 0.01 Total: -39.76 kcal Atomic # 14 Polarization: 21.88 SS G_CDS: -5.02 Total: 16.86 kcal Total LS contribution 3.65 Total: 3.65 kcal Total: -30.00 -7.30 -37.30 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000052288191.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.793 kcal (2) G-P(sol) polarization free energy of solvation -30.001 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.791 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.298 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.300 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.493 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.09 seconds