Wall clock time and date at job start Mon Mar 30 2020 02:06:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09000 * 115.55516 * 2 1 4 4 C 1.52998 * 117.50083 * 214.31719 * 2 1 3 5 5 C 1.53000 * 117.49997 * 145.69085 * 2 1 3 6 6 H 1.08994 * 117.51868 * 0.02562 * 5 2 1 7 7 N 1.46898 * 117.49614 * 214.98011 * 5 2 1 8 8 C 1.46906 * 110.99888 * 154.98994 * 7 5 2 9 9 C 1.52999 * 109.46897 * 180.02562 * 8 7 5 10 10 C 1.50706 * 109.46573 * 179.97438 * 9 8 7 11 11 H 1.07995 * 120.00167 * 359.72054 * 10 9 8 12 12 C 1.37879 * 119.99394 * 179.97438 * 10 9 8 13 13 N 1.31514 * 120.00338 * 0.02562 * 12 10 9 14 14 Si 1.86800 * 119.99424 * 180.02562 * 12 10 9 15 15 H 1.48490 * 109.47405 * 60.00219 * 14 12 10 16 16 H 1.48503 * 109.46845 * 180.02562 * 14 12 10 17 17 H 1.48503 * 109.47399 * 299.99813 * 14 12 10 18 18 H 1.08999 * 109.46857 * 274.29927 * 1 2 3 19 19 H 1.08994 * 109.47451 * 34.31008 * 1 2 3 20 20 H 1.09002 * 109.46708 * 154.31052 * 1 2 3 21 21 H 1.08994 * 117.49646 * 145.02131 * 4 2 1 22 22 H 1.09001 * 117.51709 * 359.97438 * 4 2 1 23 23 H 1.00896 * 111.00084 * 278.94404 * 7 5 2 24 24 H 1.09000 * 109.47033 * 59.99886 * 8 7 5 25 25 H 1.09001 * 109.46544 * 299.99942 * 8 7 5 26 26 H 1.09000 * 109.47486 * 60.00024 * 9 8 7 27 27 H 1.09001 * 109.47362 * 299.99301 * 9 8 7 28 28 H 0.96996 * 119.99730 * 179.97438 * 13 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 2.0003 0.9834 0.0000 4 6 2.2365 -1.1209 -0.7651 5 6 2.2365 -1.1210 0.7650 6 1 1.6117 -1.8589 1.2680 7 7 3.4967 -0.7896 1.4432 8 6 3.7455 -1.7024 2.5671 9 6 5.0633 -1.3263 3.2474 10 6 5.3181 -2.2623 4.4007 11 1 4.6087 -3.0441 4.6286 12 6 6.4544 -2.1172 5.1681 13 7 7.3156 -1.1618 4.8939 14 14 6.7707 -3.2779 6.5972 15 1 6.8536 -4.6723 6.0934 16 1 8.0496 -2.9128 7.2576 17 1 5.6599 -3.1708 7.5771 18 1 -0.3633 0.0770 1.0248 19 1 -0.3634 0.8488 -0.5792 20 1 -0.3633 -0.9261 -0.4455 21 1 3.1716 -0.8749 -1.2683 22 1 1.6116 -1.8587 -1.2682 23 1 4.2692 -0.7962 0.7942 24 1 3.8063 -2.7259 2.1972 25 1 2.9302 -1.6237 3.2863 26 1 5.0021 -0.3028 3.6173 27 1 5.8788 -1.4047 2.5284 28 1 8.1147 -1.0596 5.4340 RHF calculation, no. of doubly occupied orbitals= 32 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000052288191.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:06:10 Heat of formation + Delta-G solvation = -14.235958 kcal Electronic energy + Delta-G solvation = -9316.404310 eV Core-core repulsion = 7559.512835 eV Total energy + Delta-G solvation = -1756.891475 eV No. of doubly occupied orbitals = 32 Molecular weight (most abundant/longest-lived isotopes) = 169.116 amu Computer time = 0.10 seconds Orbital eigenvalues (eV) -39.19199 -36.18569 -34.36922 -30.89521 -28.72684 -25.97680 -22.56082 -22.49113 -21.20684 -18.54548 -16.81902 -16.46737 -16.26330 -15.33026 -14.52238 -14.27471 -13.92576 -13.73221 -13.25490 -12.88784 -12.77322 -12.51942 -12.26581 -12.16801 -11.57049 -11.40322 -11.32804 -10.74453 -10.56703 -9.07064 -8.21274 -6.33437 1.40278 1.43985 1.51953 2.40075 2.87303 3.11985 3.24560 3.96083 4.09208 4.13373 4.48110 4.55611 4.57187 4.72958 4.91478 4.98814 5.01795 5.03762 5.23942 5.42256 5.47692 5.64270 5.77571 6.13363 6.27298 6.48730 6.83238 7.35957 8.90908 Molecular weight = 169.12amu Principal moments of inertia in cm(-1) A = 0.114053 B = 0.007837 C = 0.007653 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 245.441516 B = 3572.129805 C = 3657.655196 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C -0.147 4.147 3 H 0.095 0.905 4 C -0.189 4.189 5 C 0.005 3.995 6 H 0.105 0.895 7 N -0.671 5.671 8 C 0.086 3.914 9 C 0.030 3.970 10 C -0.547 4.547 11 H 0.062 0.938 12 C 0.000 4.000 13 N -0.932 5.932 14 Si 0.970 3.030 15 H -0.265 1.265 16 H -0.282 1.282 17 H -0.266 1.266 18 H 0.056 0.944 19 H 0.071 0.929 20 H 0.064 0.936 21 H 0.094 0.906 22 H 0.110 0.890 23 H 0.339 0.661 24 H 0.022 0.978 25 H 0.058 0.942 26 H -0.007 1.007 27 H -0.008 1.008 28 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.468 -0.984 -8.400 13.458 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C -0.167 4.167 3 H 0.113 0.887 4 C -0.228 4.228 5 C -0.106 4.106 6 H 0.123 0.877 7 N -0.301 5.301 8 C -0.042 4.042 9 C -0.007 4.007 10 C -0.586 4.586 11 H 0.080 0.920 12 C -0.198 4.198 13 N -0.572 5.572 14 Si 0.794 3.206 15 H -0.190 1.190 16 H -0.207 1.207 17 H -0.191 1.191 18 H 0.075 0.925 19 H 0.090 0.910 20 H 0.083 0.917 21 H 0.112 0.888 22 H 0.129 0.871 23 H 0.158 0.842 24 H 0.041 0.959 25 H 0.076 0.924 26 H 0.012 0.988 27 H 0.010 0.990 28 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -10.580 -0.426 -7.934 13.231 hybrid contribution 0.872 -1.030 0.298 1.382 sum -9.708 -1.456 -7.636 12.437 Atomic orbital electron populations 1.21338 0.91256 1.02744 1.01994 1.22622 0.96118 0.94620 1.03331 0.88685 1.23637 1.03198 1.02134 0.93823 1.22642 0.94275 1.01363 0.92310 0.87696 1.60253 1.04180 1.53563 1.12091 1.21815 0.98162 0.92487 0.91774 1.18940 0.91893 0.95551 0.94358 1.21579 1.06678 1.15815 1.14480 0.92006 1.26012 0.95744 0.97302 1.00749 1.70104 1.12123 1.33699 1.41298 0.85433 0.77583 0.78973 0.78637 1.19027 1.20742 1.19113 0.92549 0.90956 0.91669 0.88791 0.87127 0.84209 0.95940 0.92356 0.98831 0.98954 0.92668 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.27 10.19 71.98 0.73 -1.53 15 2 C -0.15 -3.70 6.33 -10.79 -0.07 -3.77 15 3 H 0.09 2.57 8.14 -2.39 -0.02 2.55 15 4 C -0.19 -4.48 9.88 30.60 0.30 -4.18 15 5 C 0.00 0.14 6.03 44.92 0.27 0.41 15 6 H 0.11 3.09 7.90 -2.39 -0.02 3.08 15 7 N -0.67 -25.38 6.78 -491.56 -3.33 -28.72 15 8 C 0.09 3.79 5.48 86.30 0.47 4.27 15 9 C 0.03 1.66 5.23 29.85 0.16 1.81 15 10 C -0.55 -31.88 9.11 25.60 0.23 -31.65 15 11 H 0.06 3.42 7.74 -2.91 -0.02 3.40 15 12 C 0.00 0.00 5.46 84.66 0.46 0.46 15 13 N -0.93 -57.80 13.29 21.45 0.28 -57.51 15 14 Si 0.97 44.67 29.54 68.60 2.03 46.69 15 15 H -0.27 -11.66 7.11 99.48 0.71 -10.96 15 16 H -0.28 -12.67 7.11 99.48 0.71 -11.96 15 17 H -0.27 -11.76 7.11 99.48 0.71 -11.05 15 18 H 0.06 1.14 8.14 -2.39 -0.02 1.12 15 19 H 0.07 1.19 8.14 -2.39 -0.02 1.17 15 20 H 0.06 1.11 7.90 -2.39 -0.02 1.09 15 21 H 0.09 2.20 8.09 -2.39 -0.02 2.18 15 22 H 0.11 2.17 8.05 -2.39 -0.02 2.15 15 23 H 0.34 12.41 8.52 -89.70 -0.76 11.65 15 24 H 0.02 0.95 8.14 -2.39 -0.02 0.94 15 25 H 0.06 2.56 8.14 -2.39 -0.02 2.54 15 26 H -0.01 -0.41 8.14 -2.39 -0.02 -0.43 15 27 H -0.01 -0.46 8.14 -2.39 -0.02 -0.48 15 28 H 0.26 15.36 8.31 -92.71 -0.77 14.59 15 Total: -1.00 -64.04 242.13 1.89 -62.15 By element: Atomic # 1 Polarization: 11.22 SS G_CDS: 0.35 Total: 11.57 kcal Atomic # 6 Polarization: -36.74 SS G_CDS: 2.56 Total: -34.18 kcal Atomic # 7 Polarization: -83.18 SS G_CDS: -3.05 Total: -86.23 kcal Atomic # 14 Polarization: 44.67 SS G_CDS: 2.03 Total: 46.69 kcal Total: -64.04 1.89 -62.15 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000052288191.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.914 kcal (2) G-P(sol) polarization free energy of solvation -64.042 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.128 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.892 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.150 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.236 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.10 seconds