Wall clock time and date at job start Mon Mar 30 2020 01:40:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08998 * 115.54954 * 2 1 4 4 C 1.53004 * 117.49557 * 214.29137 * 2 1 3 5 5 C 1.52996 * 117.49761 * 145.67122 * 2 1 3 6 6 H 1.08996 * 117.50076 * 359.97361 * 5 2 1 7 7 N 1.46503 * 117.49664 * 214.97847 * 5 2 1 8 8 C 1.34786 * 119.99926 * 155.00248 * 7 5 2 9 9 O 1.21686 * 119.99696 * 359.97438 * 8 7 5 10 10 C 1.46373 * 119.99966 * 179.97438 * 8 7 5 11 11 H 1.08002 * 119.99728 * 6.24178 * 10 8 7 12 12 C 1.40042 * 119.99893 * 186.24264 * 10 8 7 13 13 N 1.30671 * 119.99961 * 184.67122 * 12 10 8 14 14 Si 1.86802 * 120.00099 * 4.67753 * 12 10 8 15 15 H 1.48505 * 109.47216 * 179.97438 * 14 12 10 16 16 H 1.48503 * 109.46975 * 299.99476 * 14 12 10 17 17 H 1.48499 * 109.47526 * 59.99639 * 14 12 10 18 18 H 1.08998 * 109.46909 * 274.33152 * 1 2 3 19 19 H 1.09002 * 109.47173 * 34.32868 * 1 2 3 20 20 H 1.08999 * 109.47531 * 154.32964 * 1 2 3 21 21 H 1.09004 * 117.49078 * 145.02298 * 4 2 1 22 22 H 1.08990 * 117.49957 * 0.02562 * 4 2 1 23 23 H 0.96996 * 120.00087 * 334.99759 * 7 5 2 24 24 H 0.96993 * 120.00036 * 354.90301 * 13 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 2.0001 0.9834 0.0000 4 6 2.2364 -1.1213 -0.7647 5 6 2.2364 -1.1207 0.7653 6 1 1.6112 -1.8578 1.2692 7 7 3.4932 -0.7901 1.4417 8 6 3.8988 -1.5158 2.5026 9 8 3.2208 -2.4453 2.8989 10 6 5.1547 -1.1858 3.1780 11 1 5.7056 -0.3020 2.8919 12 6 5.6420 -2.0162 4.1949 13 7 6.7138 -1.6746 4.8599 14 14 4.7601 -3.6121 4.6007 15 1 5.4709 -4.3033 5.7063 16 1 3.3660 -3.3151 5.0173 17 1 4.7424 -4.4869 3.4009 18 1 -0.3633 0.0776 1.0247 19 1 -0.3634 0.8487 -0.5796 20 1 -0.3634 -0.9262 -0.4452 21 1 3.1715 -0.8756 -1.2680 22 1 1.6112 -1.8586 -1.2680 23 1 4.0335 -0.0490 1.1259 24 1 7.2139 -0.8849 4.6013 RHF calculation, no. of doubly occupied orbitals= 31 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000052290209.mol2 24 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:40:34 Heat of formation + Delta-G solvation = -41.934917 kcal Electronic energy + Delta-G solvation = -9460.256239 eV Core-core repulsion = 7566.330552 eV Total energy + Delta-G solvation = -1893.925687 eV No. of doubly occupied orbitals = 31 Molecular weight (most abundant/longest-lived isotopes) = 169.084 amu Computer time = 0.09 seconds Orbital eigenvalues (eV) -38.43369 -36.54956 -32.89964 -31.94522 -28.07680 -26.07316 -21.70816 -20.35988 -19.77342 -17.95433 -15.82971 -15.40048 -13.82095 -13.64295 -13.43225 -13.09283 -12.85397 -12.31091 -12.09084 -11.64070 -11.26405 -10.71884 -10.27683 -10.08468 -9.72652 -9.21530 -8.97017 -7.95411 -7.71623 -7.00528 -4.94476 3.57202 3.69501 4.06741 4.07810 4.34749 4.45626 4.60592 5.15451 5.20431 5.35860 5.49463 5.61803 5.91192 5.94268 6.02199 6.15152 6.39674 6.49406 7.47428 7.68792 7.74849 8.09361 8.82169 9.04443 10.03866 10.32316 Molecular weight = 169.08amu Principal moments of inertia in cm(-1) A = 0.085766 B = 0.012614 C = 0.011716 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 326.391322 B = 2219.153556 C = 2389.315338 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C -0.181 4.181 3 H 0.099 0.901 4 C -0.203 4.203 5 C 0.109 3.891 6 H 0.129 0.871 7 N -0.726 5.726 8 C 0.553 3.447 9 O -0.617 6.617 10 C -0.597 4.597 11 H 0.070 0.930 12 C 0.060 3.940 13 N -0.832 5.832 14 Si 1.131 2.869 15 H -0.322 1.322 16 H -0.280 1.280 17 H -0.291 1.291 18 H 0.058 0.942 19 H 0.054 0.946 20 H 0.055 0.945 21 H 0.089 0.911 22 H 0.093 0.907 23 H 0.388 0.612 24 H 0.277 0.723 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.239 2.677 -8.132 11.212 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C -0.201 4.201 3 H 0.117 0.883 4 C -0.242 4.242 5 C 0.001 3.999 6 H 0.147 0.853 7 N -0.374 5.374 8 C 0.362 3.638 9 O -0.510 6.510 10 C -0.634 4.634 11 H 0.088 0.912 12 C -0.157 4.157 13 N -0.459 5.459 14 Si 0.964 3.036 15 H -0.254 1.254 16 H -0.208 1.208 17 H -0.218 1.218 18 H 0.077 0.923 19 H 0.073 0.927 20 H 0.074 0.926 21 H 0.108 0.892 22 H 0.111 0.889 23 H 0.221 0.779 24 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -7.622 0.855 -6.828 10.269 hybrid contribution 0.434 2.076 -1.517 2.608 sum -7.188 2.932 -8.345 11.397 Atomic orbital electron populations 1.21290 0.92948 1.01419 1.01715 1.22771 0.95333 0.95122 1.06855 0.88330 1.23566 1.02211 1.01424 0.97021 1.21461 0.89671 0.99073 0.89701 0.85306 1.45283 1.22047 1.36437 1.33614 1.18481 0.86369 0.80753 0.78203 1.90134 1.58824 1.34196 1.67859 1.22042 1.06735 1.12813 1.21760 0.91174 1.27192 0.94867 1.03582 0.90106 1.70654 1.14627 1.25666 1.34997 0.82365 0.74314 0.72163 0.74748 1.25380 1.20751 1.21839 0.92254 0.92658 0.92641 0.89223 0.88892 0.77931 0.91208 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.43 10.19 37.16 0.38 -1.06 14 2 C -0.18 -2.66 6.33 -90.62 -0.57 -3.23 14 3 H 0.10 1.40 8.14 -51.93 -0.42 0.97 14 4 C -0.20 -3.06 10.10 -26.73 -0.27 -3.33 14 5 C 0.11 2.05 6.15 -67.93 -0.42 1.63 14 6 H 0.13 2.64 7.40 -51.93 -0.38 2.25 14 7 N -0.73 -16.00 5.56 -55.22 -0.31 -16.31 14 8 C 0.55 15.08 7.57 -12.98 -0.10 14.98 14 9 O -0.62 -18.10 11.63 5.20 0.06 -18.04 14 10 C -0.60 -17.16 9.96 -35.64 -0.36 -17.52 14 11 H 0.07 1.98 8.05 -52.49 -0.42 1.55 14 12 C 0.06 1.76 5.52 -17.37 -0.10 1.66 14 13 N -0.83 -24.30 13.64 55.55 0.76 -23.54 14 14 Si 1.13 30.29 25.99 -169.99 -4.42 25.87 14 15 H -0.32 -8.26 7.11 56.52 0.40 -7.86 14 16 H -0.28 -7.72 6.78 56.52 0.38 -7.34 14 17 H -0.29 -7.82 7.11 56.52 0.40 -7.42 14 18 H 0.06 0.75 8.14 -51.93 -0.42 0.33 14 19 H 0.05 0.58 8.14 -51.93 -0.42 0.16 14 20 H 0.05 0.64 7.90 -51.93 -0.41 0.23 14 21 H 0.09 1.32 8.14 -51.93 -0.42 0.89 14 22 H 0.09 1.26 8.05 -51.93 -0.42 0.84 14 23 H 0.39 7.65 8.81 -40.82 -0.36 7.29 14 24 H 0.28 7.76 8.72 -40.82 -0.36 7.40 14 LS Contribution 215.14 15.07 3.24 3.24 Total: -1.00 -31.37 215.14 -4.95 -36.32 By element: Atomic # 1 Polarization: 2.16 SS G_CDS: -2.86 Total: -0.70 kcal Atomic # 6 Polarization: -5.42 SS G_CDS: -1.43 Total: -6.86 kcal Atomic # 7 Polarization: -40.29 SS G_CDS: 0.45 Total: -39.84 kcal Atomic # 8 Polarization: -18.10 SS G_CDS: 0.06 Total: -18.04 kcal Atomic # 14 Polarization: 30.29 SS G_CDS: -4.42 Total: 25.87 kcal Total LS contribution 3.24 Total: 3.24 kcal Total: -31.37 -4.95 -36.32 kcal The number of atoms in the molecule is 24 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000052290209.mol2 24 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.614 kcal (2) G-P(sol) polarization free energy of solvation -31.368 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.982 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.953 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.321 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.935 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.09 seconds