Wall clock time and date at job start Mon Mar 30 2020 01:40:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09007 * 115.55852 * 2 1 4 4 C 1.53069 * 117.51498 * 145.69696 * 2 1 3 5 5 C 1.52992 * 117.50210 * 214.30785 * 2 1 3 6 6 H 1.09001 * 117.49874 * 144.99413 * 5 2 1 7 7 N 1.46507 * 117.49876 * 0.02562 * 5 2 1 8 8 C 1.34774 * 119.99686 * 155.08408 * 7 5 2 9 9 O 1.21683 * 120.00444 * 0.02562 * 8 7 5 10 10 C 1.46382 * 119.99501 * 180.02562 * 8 7 5 11 11 H 1.08002 * 119.99760 * 359.97438 * 10 8 7 12 12 C 1.40047 * 119.99800 * 180.27774 * 10 8 7 13 13 N 1.30674 * 120.00002 * 359.72267 * 12 10 8 14 14 Si 1.86801 * 119.99850 * 179.72342 * 12 10 8 15 15 H 1.48501 * 109.46896 * 89.99928 * 14 12 10 16 16 H 1.48499 * 109.47039 * 210.00088 * 14 12 10 17 17 H 1.48501 * 109.47275 * 329.99888 * 14 12 10 18 18 H 1.09001 * 109.46765 * 205.68984 * 1 2 3 19 19 H 1.09003 * 109.47372 * 325.69295 * 1 2 3 20 20 H 1.08998 * 109.46808 * 85.69039 * 1 2 3 21 21 H 1.09006 * 117.51279 * 0.02562 * 4 2 1 22 22 H 1.08998 * 117.51845 * 214.95715 * 4 2 1 23 23 H 0.97000 * 119.99595 * 335.08790 * 7 5 2 24 24 H 0.97004 * 119.99542 * 179.97438 * 13 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 2.0003 0.9834 0.0000 4 6 2.2372 -1.1214 0.7651 5 6 2.2365 -1.1209 -0.7649 6 1 3.1714 -0.8750 -1.2685 7 7 1.3962 -2.1119 -1.4418 8 6 1.8771 -2.7921 -2.5013 9 8 3.0093 -2.5835 -2.8954 10 6 1.0372 -3.7819 -3.1779 11 1 0.0325 -3.9673 -2.8279 12 6 1.5389 -4.4929 -4.2753 13 7 2.7547 -4.2689 -4.6985 14 14 0.4699 -5.7615 -5.1340 15 1 -0.2964 -5.1064 -6.2244 16 1 1.3301 -6.8286 -5.7052 17 1 -0.4740 -6.3578 -4.1548 18 1 -0.3633 -0.9261 0.4455 19 1 -0.3634 0.8489 0.5792 20 1 -0.3633 0.0772 -1.0248 21 1 1.6124 -1.8595 1.2681 22 1 3.1725 -0.8759 1.2681 23 1 0.4938 -2.2784 -1.1274 24 1 3.1023 -4.7617 -5.4583 RHF calculation, no. of doubly occupied orbitals= 31 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000052290212.mol2 24 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:40:35 Heat of formation + Delta-G solvation = -50.308880 kcal Electronic energy + Delta-G solvation = -9488.105479 eV Core-core repulsion = 7593.816670 eV Total energy + Delta-G solvation = -1894.288809 eV No. of doubly occupied orbitals = 31 Molecular weight (most abundant/longest-lived isotopes) = 169.084 amu Computer time = 0.09 seconds Orbital eigenvalues (eV) -39.89490 -37.90233 -34.67857 -33.13538 -29.39441 -28.28449 -23.37625 -22.09045 -20.64809 -19.31357 -17.60726 -16.61328 -16.17913 -15.39595 -14.75651 -14.54757 -13.91282 -13.37779 -13.28378 -12.90266 -12.76687 -12.65203 -12.27967 -12.02126 -11.70075 -10.93307 -10.85274 -9.90281 -9.16488 -8.30908 -6.87908 1.40209 1.41980 1.57614 2.24179 2.40959 2.96671 3.04050 3.64296 3.85732 4.15783 4.20628 4.46628 4.83743 4.93541 4.96712 5.05831 5.20158 5.30161 5.44054 5.86159 6.20868 6.30752 6.84500 7.52678 8.47267 8.65607 Molecular weight = 169.08amu Principal moments of inertia in cm(-1) A = 0.085606 B = 0.012000 C = 0.011013 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 326.999838 B = 2332.796130 C = 2541.872784 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C -0.153 4.153 3 H 0.119 0.881 4 C -0.184 4.184 5 C 0.060 3.940 6 H 0.090 0.910 7 N -0.722 5.722 8 C 0.537 3.463 9 O -0.633 6.633 10 C -0.574 4.574 11 H 0.089 0.911 12 C 0.027 3.973 13 N -0.822 5.822 14 Si 1.002 2.998 15 H -0.261 1.261 16 H -0.272 1.272 17 H -0.248 1.248 18 H 0.058 0.942 19 H 0.083 0.917 20 H 0.050 0.950 21 H 0.098 0.902 22 H 0.107 0.893 23 H 0.395 0.605 24 H 0.275 0.725 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.744 3.443 7.049 10.346 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C -0.173 4.173 3 H 0.137 0.863 4 C -0.223 4.223 5 C -0.047 4.047 6 H 0.108 0.892 7 N -0.374 5.374 8 C 0.341 3.659 9 O -0.521 6.521 10 C -0.610 4.610 11 H 0.107 0.893 12 C -0.188 4.188 13 N -0.452 5.452 14 Si 0.821 3.179 15 H -0.185 1.185 16 H -0.197 1.197 17 H -0.171 1.171 18 H 0.077 0.923 19 H 0.102 0.898 20 H 0.069 0.931 21 H 0.117 0.883 22 H 0.125 0.875 23 H 0.229 0.771 24 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -5.788 3.555 6.644 9.502 hybrid contribution -0.305 -0.500 -0.325 0.670 sum -6.093 3.055 6.319 9.294 Atomic orbital electron populations 1.21287 0.91684 1.02823 1.01776 1.22903 0.96703 0.94572 1.03135 0.86319 1.23592 1.03216 1.01464 0.94024 1.21387 0.96905 0.94758 0.91664 0.89179 1.45201 1.16798 1.41986 1.33412 1.18680 0.86728 0.81329 0.79134 1.90535 1.22600 1.70608 1.68330 1.21433 1.01459 1.22482 1.15647 0.89331 1.27023 0.96201 0.98857 0.96684 1.70198 1.17168 1.36360 1.21432 0.84966 0.77955 0.76553 0.78464 1.18517 1.19727 1.17149 0.92308 0.89843 0.93125 0.88350 0.87488 0.77065 0.91486 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.96 9.19 71.98 0.66 -2.30 14 2 C -0.15 -4.48 6.41 -10.77 -0.07 -4.55 14 3 H 0.12 3.03 8.14 -2.38 -0.02 3.01 14 4 C -0.18 -5.60 10.11 30.62 0.31 -5.29 14 5 C 0.06 2.46 6.40 44.99 0.29 2.74 14 6 H 0.09 4.27 7.40 -2.39 -0.02 4.25 14 7 N -0.72 -33.89 5.34 -446.83 -2.39 -36.28 14 8 C 0.54 32.21 7.75 86.36 0.67 32.88 14 9 O -0.63 -43.83 14.59 -4.29 -0.06 -43.90 14 10 C -0.57 -33.16 9.54 24.83 0.24 -32.92 14 11 H 0.09 4.56 7.85 -2.91 -0.02 4.54 14 12 C 0.03 1.55 5.50 85.30 0.47 2.02 14 13 N -0.82 -51.17 11.83 21.84 0.26 -50.91 14 14 Si 1.00 41.21 29.56 68.60 2.03 43.24 14 15 H -0.26 -10.18 7.11 99.48 0.71 -9.48 14 16 H -0.27 -10.81 7.11 99.48 0.71 -10.10 14 17 H -0.25 -9.45 7.11 99.48 0.71 -8.75 14 18 H 0.06 1.41 7.61 -2.39 -0.02 1.39 14 19 H 0.08 1.61 8.14 -2.39 -0.02 1.59 14 20 H 0.05 1.39 8.14 -2.39 -0.02 1.37 14 21 H 0.10 2.83 8.05 -2.38 -0.02 2.81 14 22 H 0.11 2.87 8.14 -2.39 -0.02 2.85 14 23 H 0.40 16.03 7.67 -92.71 -0.71 15.32 14 24 H 0.28 15.44 8.29 -92.71 -0.77 14.67 14 Total: -1.00 -74.66 216.97 2.89 -71.78 By element: Atomic # 1 Polarization: 23.00 SS G_CDS: 0.49 Total: 23.49 kcal Atomic # 6 Polarization: -9.99 SS G_CDS: 2.57 Total: -7.42 kcal Atomic # 7 Polarization: -85.06 SS G_CDS: -2.13 Total: -87.19 kcal Atomic # 8 Polarization: -43.83 SS G_CDS: -0.06 Total: -43.90 kcal Atomic # 14 Polarization: 41.21 SS G_CDS: 2.03 Total: 43.24 kcal Total: -74.66 2.89 -71.78 kcal The number of atoms in the molecule is 24 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000052290212.mol2 24 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.466 kcal (2) G-P(sol) polarization free energy of solvation -74.663 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.196 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.887 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.775 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.309 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.09 seconds