Wall clock time and date at job start Mon Mar 30 2020 02:04:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08998 * 109.87080 * 2 1 4 4 C 1.54315 * 109.88213 * 238.98483 * 2 1 3 5 5 C 1.55156 * 102.94436 * 218.23501 * 4 2 1 6 6 C 1.54906 * 101.61451 * 35.48113 * 5 4 2 7 7 H 1.09001 * 110.37094 * 204.16995 * 6 5 4 8 8 C 1.53003 * 110.36682 * 81.85060 * 6 5 4 9 9 N 1.47017 * 110.01051 * 121.09571 * 2 1 3 10 10 C 1.36941 * 125.65253 * 298.46865 * 9 2 1 11 11 H 1.07992 * 119.99933 * 0.02562 * 10 9 2 12 12 C 1.38807 * 120.00015 * 179.97438 * 10 9 2 13 13 N 1.31625 * 120.00003 * 359.97438 * 12 10 9 14 14 Si 1.86806 * 120.00086 * 179.97438 * 12 10 9 15 15 H 1.48497 * 109.47045 * 89.99955 * 14 12 10 16 16 H 1.48492 * 109.47219 * 209.99857 * 14 12 10 17 17 H 1.48496 * 109.46868 * 330.00237 * 14 12 10 18 18 H 1.08998 * 109.47104 * 179.56287 * 1 2 3 19 19 H 1.09007 * 109.47228 * 299.56417 * 1 2 3 20 20 H 1.09002 * 109.47232 * 59.56214 * 1 2 3 21 21 H 1.09001 * 110.72062 * 99.87103 * 4 2 1 22 22 H 1.09006 * 110.87609 * 336.67059 * 4 2 1 23 23 H 1.09002 * 111.00677 * 153.57697 * 5 4 2 24 24 H 1.09002 * 111.00564 * 277.38955 * 5 4 2 25 25 H 1.09002 * 109.47045 * 61.45221 * 8 6 5 26 26 H 1.09003 * 109.47519 * 181.45543 * 8 6 5 27 27 H 1.09003 * 109.47027 * 301.45424 * 8 6 5 28 28 H 0.97004 * 119.99336 * 179.97438 * 13 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9005 1.0251 0.0000 4 6 2.0548 -0.7477 -1.2437 5 6 3.2900 -1.5101 -0.6954 6 6 2.8206 -1.8769 0.7345 7 1 3.6793 -2.0294 1.3883 8 6 1.9452 -3.1313 0.7022 9 7 2.0331 -0.7135 1.1829 10 6 1.8078 -0.3569 2.4858 11 1 1.2144 0.5166 2.7117 12 6 2.3413 -1.1190 3.5160 13 7 3.0633 -2.1846 3.2407 14 14 2.0346 -0.6322 5.2933 15 1 0.7963 -1.2914 5.7804 16 1 3.1848 -1.0602 6.1293 17 1 1.8788 0.8418 5.3829 18 1 -0.3633 -1.0276 -0.0078 19 1 -0.3634 0.5071 0.8939 20 1 -0.3634 0.5206 -0.8860 21 1 2.3503 -0.0432 -2.0211 22 1 1.3074 -1.4455 -1.6215 23 1 3.4887 -2.4061 -1.2833 24 1 4.1666 -0.8630 -0.6649 25 1 2.5253 -3.9694 0.3158 26 1 1.6022 -3.3612 1.7110 27 1 1.0843 -2.9571 0.0567 28 1 3.4363 -2.7168 3.9608 RHF calculation, no. of doubly occupied orbitals= 32 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000059569464.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:04:08 Heat of formation + Delta-G solvation = 14.130381 kcal Electronic energy + Delta-G solvation = -10398.182902 eV Core-core repulsion = 8642.521483 eV Total energy + Delta-G solvation = -1755.661418 eV No. of doubly occupied orbitals = 32 Molecular weight (most abundant/longest-lived isotopes) = 169.116 amu Computer time = 0.12 seconds Orbital eigenvalues (eV) -37.81228 -32.54719 -31.03967 -29.02325 -27.18664 -23.97894 -23.16335 -19.35818 -19.07953 -16.61257 -15.03495 -14.12953 -13.69633 -12.89187 -12.48338 -12.23945 -11.72511 -11.36591 -11.27233 -11.01236 -10.78898 -10.75050 -10.58889 -10.01343 -9.79293 -9.55079 -9.29583 -9.13473 -8.51458 -6.72937 -5.55614 -2.97489 3.44095 3.49412 3.50949 4.55947 5.46965 5.53496 5.70706 5.82047 5.97765 6.28481 6.32474 6.43349 6.46258 6.61958 6.73250 6.75003 6.93332 7.01983 7.06256 7.26652 7.31648 7.68241 7.94594 8.02212 8.47935 9.33953 9.94193 10.60758 11.47160 Molecular weight = 169.12amu Principal moments of inertia in cm(-1) A = 0.058607 B = 0.018893 C = 0.016079 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 477.642694 B = 1481.649169 C = 1740.977564 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.153 3.847 3 H 0.030 0.970 4 C -0.125 4.125 5 C -0.143 4.143 6 C 0.170 3.830 7 H 0.113 0.887 8 C -0.135 4.135 9 N -0.593 5.593 10 C -0.214 4.214 11 H 0.075 0.925 12 C -0.014 4.014 13 N -0.919 5.919 14 Si 0.910 3.090 15 H -0.291 1.291 16 H -0.292 1.292 17 H -0.283 1.283 18 H 0.048 0.952 19 H 0.048 0.952 20 H 0.035 0.965 21 H 0.053 0.947 22 H 0.059 0.941 23 H 0.055 0.945 24 H 0.056 0.944 25 H 0.022 0.978 26 H 0.065 0.935 27 H 0.018 0.982 28 H 0.249 0.751 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.459 1.189 -5.859 6.154 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C 0.046 3.954 3 H 0.048 0.952 4 C -0.163 4.163 5 C -0.181 4.181 6 C 0.064 3.936 7 H 0.131 0.869 8 C -0.194 4.194 9 N -0.316 5.316 10 C -0.343 4.343 11 H 0.093 0.907 12 C -0.209 4.209 13 N -0.568 5.568 14 Si 0.741 3.259 15 H -0.219 1.219 16 H -0.218 1.218 17 H -0.209 1.209 18 H 0.067 0.933 19 H 0.067 0.933 20 H 0.054 0.946 21 H 0.072 0.928 22 H 0.078 0.922 23 H 0.073 0.927 24 H 0.075 0.925 25 H 0.041 0.959 26 H 0.084 0.916 27 H 0.037 0.963 28 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges -1.397 1.141 -5.629 5.911 hybrid contribution -0.352 0.162 0.920 0.999 sum -1.749 1.303 -4.708 5.189 Atomic orbital electron populations 1.22251 0.98700 1.00811 0.99546 1.20902 0.92012 0.94833 0.87649 0.95220 1.22571 0.98152 0.98743 0.96790 1.22977 0.96758 0.98737 0.99637 1.21512 0.95931 0.85931 0.90188 0.86935 1.22143 0.98258 0.97812 1.01190 1.44685 1.58925 1.27789 1.00237 1.19046 1.26338 1.07935 0.80967 0.90733 1.24727 1.00803 0.97628 0.97699 1.69834 1.39218 1.17991 1.29711 0.86132 0.77106 0.77651 0.84993 1.21875 1.21795 1.20882 0.93318 0.93255 0.94616 0.92816 0.92187 0.92653 0.92547 0.95870 0.91586 0.96288 0.93974 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.02 9.16 37.16 0.34 -2.68 15 2 C 0.15 3.32 3.72 -66.96 -0.25 3.07 15 3 H 0.03 0.66 8.14 -51.93 -0.42 0.23 15 4 C -0.12 -2.33 6.09 -24.90 -0.15 -2.48 15 5 C -0.14 -2.87 6.56 -24.58 -0.16 -3.03 15 6 C 0.17 4.17 2.65 -66.39 -0.18 3.99 15 7 H 0.11 3.14 5.88 -51.93 -0.31 2.83 15 8 C -0.13 -3.16 9.22 37.16 0.34 -2.82 15 9 N -0.59 -15.31 2.78 -155.14 -0.43 -15.74 15 10 C -0.21 -6.00 9.87 -15.06 -0.15 -6.15 15 11 H 0.07 2.04 7.83 -52.49 -0.41 1.63 15 12 C -0.01 -0.38 5.49 -17.43 -0.10 -0.48 15 13 N -0.92 -26.56 8.91 55.49 0.49 -26.06 15 14 Si 0.91 22.33 29.55 -169.99 -5.02 17.30 15 15 H -0.29 -7.17 7.11 56.52 0.40 -6.77 15 16 H -0.29 -7.21 7.11 56.52 0.40 -6.81 15 17 H -0.28 -6.81 7.11 56.52 0.40 -6.41 15 18 H 0.05 0.99 8.14 -51.93 -0.42 0.56 15 19 H 0.05 1.01 8.01 -51.92 -0.42 0.59 15 20 H 0.03 0.59 8.14 -51.93 -0.42 0.16 15 21 H 0.05 0.87 8.14 -51.93 -0.42 0.45 15 22 H 0.06 1.07 7.49 -51.93 -0.39 0.69 15 23 H 0.05 1.00 8.04 -51.93 -0.42 0.58 15 24 H 0.06 1.12 8.14 -51.93 -0.42 0.69 15 25 H 0.02 0.48 8.14 -51.93 -0.42 0.06 15 26 H 0.07 1.75 7.14 -51.93 -0.37 1.38 15 27 H 0.02 0.41 7.47 -51.93 -0.39 0.02 15 28 H 0.25 7.06 8.31 -40.82 -0.34 6.72 15 LS Contribution 224.35 15.07 3.38 3.38 Total: -1.00 -28.84 224.35 -6.25 -35.09 By element: Atomic # 1 Polarization: 0.97 SS G_CDS: -4.37 Total: -3.40 kcal Atomic # 6 Polarization: -10.27 SS G_CDS: -0.30 Total: -10.57 kcal Atomic # 7 Polarization: -41.86 SS G_CDS: 0.06 Total: -41.80 kcal Atomic # 14 Polarization: 22.33 SS G_CDS: -5.02 Total: 17.30 kcal Total LS contribution 3.38 Total: 3.38 kcal Total: -28.84 -6.25 -35.09 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000059569464.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.216 kcal (2) G-P(sol) polarization free energy of solvation -28.838 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.378 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.248 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.086 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.130 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.12 seconds