Wall clock time and date at job start Mon Mar 30 2020 02:04:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08998 * 109.99993 * 2 1 4 4 C 1.54310 * 109.77427 * 121.15711 * 2 1 3 5 5 C 1.55163 * 102.85985 * 141.88534 * 4 2 1 6 6 C 1.54906 * 101.58276 * 324.29966 * 5 4 2 7 7 H 1.08995 * 110.36753 * 278.17297 * 6 5 4 8 8 C 1.53001 * 110.45993 * 155.89752 * 6 5 4 9 9 N 1.47026 * 109.87715 * 238.90769 * 2 1 3 10 10 C 1.36938 * 125.65108 * 61.68115 * 9 2 1 11 11 H 1.07997 * 119.99822 * 200.69777 * 10 9 2 12 12 C 1.38810 * 119.99980 * 20.69227 * 10 9 2 13 13 N 1.31617 * 119.99737 * 205.45257 * 12 10 9 14 14 Si 1.86803 * 119.99976 * 25.17299 * 12 10 9 15 15 H 1.48491 * 109.47494 * 273.27966 * 14 12 10 16 16 H 1.48501 * 109.46891 * 33.27905 * 14 12 10 17 17 H 1.48502 * 109.47134 * 153.27485 * 14 12 10 18 18 H 1.09002 * 109.47174 * 176.77835 * 1 2 3 19 19 H 1.08998 * 109.47011 * 296.77368 * 1 2 3 20 20 H 1.09003 * 109.47192 * 56.77050 * 1 2 3 21 21 H 1.08994 * 110.92474 * 23.47196 * 4 2 1 22 22 H 1.09002 * 110.74127 * 260.21129 * 4 2 1 23 23 H 1.09006 * 110.99842 * 206.22851 * 5 4 2 24 24 H 1.08991 * 111.03702 * 82.39470 * 5 4 2 25 25 H 1.09004 * 109.46890 * 304.53838 * 8 6 5 26 26 H 1.09001 * 109.47222 * 64.53350 * 8 6 5 27 27 H 1.08993 * 109.46863 * 184.54029 * 8 6 5 28 28 H 0.97002 * 119.99796 * 179.72217 * 13 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9028 1.0242 0.0000 4 6 2.0521 -0.7513 1.2426 5 6 3.2889 -1.5101 0.6931 6 6 2.8191 -1.8763 -0.7369 7 1 2.1971 -2.7711 -0.7143 8 6 4.0227 -2.0887 -1.6573 9 7 2.0299 -0.7140 -1.1840 10 6 1.8049 -0.3555 -2.4863 11 1 1.9117 -1.0867 -3.2739 12 6 1.4394 0.9477 -2.7942 13 7 0.7551 1.1978 -3.8903 14 14 1.9120 2.3457 -1.6488 15 1 0.8764 2.4939 -0.5950 16 1 3.2220 2.0463 -1.0167 17 1 2.0136 3.6081 -2.4241 18 1 -0.3633 -1.0261 -0.0578 19 1 -0.3633 0.4629 0.9175 20 1 -0.3634 0.5632 -0.8596 21 1 1.3050 -1.4513 1.6167 22 1 2.3458 -0.0493 2.0231 23 1 3.4897 -2.4066 1.2799 24 1 4.1642 -0.8614 0.6627 25 1 4.6554 -1.2012 -1.6386 26 1 4.5952 -2.9503 -1.3139 27 1 3.6749 -2.2656 -2.6750 28 1 0.4961 2.1080 -4.1034 RHF calculation, no. of doubly occupied orbitals= 32 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000059569465.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:04:09 Heat of formation + Delta-G solvation = -0.801400 kcal Electronic energy + Delta-G solvation = -10429.147874 eV Core-core repulsion = 8672.838965 eV Total energy + Delta-G solvation = -1756.308909 eV No. of doubly occupied orbitals = 32 Molecular weight (most abundant/longest-lived isotopes) = 169.116 amu Computer time = 0.12 seconds Orbital eigenvalues (eV) -39.82361 -34.61025 -33.41719 -31.76381 -29.00160 -25.95454 -24.70798 -22.03968 -20.90931 -18.36875 -17.35667 -16.85258 -15.28028 -15.16621 -14.69503 -14.08688 -13.93388 -13.61163 -13.34435 -12.77550 -12.60112 -12.48744 -12.31343 -12.21326 -11.60844 -11.51456 -11.37056 -11.11642 -10.59402 -8.96564 -8.15622 -5.36041 1.29833 1.36751 1.46167 2.44319 3.04270 3.37373 3.93584 3.99638 4.14825 4.36250 4.55631 4.62015 4.69053 4.83509 4.89491 4.98270 5.02558 5.06582 5.22024 5.35766 5.43796 5.51986 5.59887 5.81814 6.16438 6.87290 7.63848 8.23026 9.05454 Molecular weight = 169.12amu Principal moments of inertia in cm(-1) A = 0.046323 B = 0.024153 C = 0.020097 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 604.301573 B = 1158.978866 C = 1392.897264 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.125 3.875 3 H 0.013 0.987 4 C -0.118 4.118 5 C -0.121 4.121 6 C 0.138 3.862 7 H 0.041 0.959 8 C -0.138 4.138 9 N -0.619 5.619 10 C -0.217 4.217 11 H 0.056 0.944 12 C -0.029 4.029 13 N -0.955 5.955 14 Si 0.934 3.066 15 H -0.266 1.266 16 H -0.279 1.279 17 H -0.316 1.316 18 H 0.056 0.944 19 H 0.068 0.932 20 H 0.023 0.977 21 H 0.088 0.912 22 H 0.086 0.914 23 H 0.103 0.897 24 H 0.063 0.937 25 H 0.039 0.961 26 H 0.081 0.919 27 H 0.032 0.968 28 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.131 -4.548 11.815 13.317 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C 0.019 3.981 3 H 0.031 0.969 4 C -0.155 4.155 5 C -0.159 4.159 6 C 0.033 3.967 7 H 0.059 0.941 8 C -0.197 4.197 9 N -0.345 5.345 10 C -0.346 4.346 11 H 0.074 0.926 12 C -0.223 4.223 13 N -0.602 5.602 14 Si 0.766 3.234 15 H -0.193 1.193 16 H -0.205 1.205 17 H -0.245 1.245 18 H 0.075 0.925 19 H 0.087 0.913 20 H 0.042 0.958 21 H 0.107 0.893 22 H 0.104 0.896 23 H 0.122 0.878 24 H 0.082 0.918 25 H 0.058 0.942 26 H 0.099 0.901 27 H 0.051 0.949 28 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges 4.059 -4.442 11.645 13.108 hybrid contribution -0.014 1.124 -0.365 1.182 sum 4.045 -3.318 11.280 12.434 Atomic orbital electron populations 1.22050 0.97060 1.01299 1.00208 1.21404 0.93670 0.94632 0.88358 0.96947 1.22605 0.98196 0.99517 0.95205 1.22809 0.97095 1.01017 0.94954 1.21616 0.91402 0.89748 0.93888 0.94126 1.21863 0.97672 1.01003 0.99119 1.45151 1.58461 1.30159 1.00771 1.18438 1.39362 0.93514 0.83267 0.92606 1.25474 1.00123 0.99064 0.97657 1.70001 1.40108 1.20356 1.29740 0.86107 0.79527 0.79260 0.78509 1.19265 1.20503 1.24546 0.92535 0.91281 0.95805 0.89300 0.89575 0.87825 0.91847 0.94222 0.90053 0.94919 0.93207 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -6.11 8.41 71.98 0.61 -5.50 15 2 C 0.12 5.30 2.51 45.34 0.11 5.42 15 3 H 0.01 0.61 3.40 -2.39 -0.01 0.60 15 4 C -0.12 -3.59 6.47 31.78 0.21 -3.38 15 5 C -0.12 -3.55 6.50 31.99 0.21 -3.34 15 6 C 0.14 5.26 3.83 45.47 0.17 5.43 15 7 H 0.04 1.52 8.14 -2.39 -0.02 1.50 15 8 C -0.14 -5.00 8.96 71.98 0.65 -4.36 15 9 N -0.62 -29.87 2.81 -644.83 -1.81 -31.68 15 10 C -0.22 -12.62 9.34 84.03 0.78 -11.83 15 11 H 0.06 3.53 7.54 -2.91 -0.02 3.51 15 12 C -0.03 -1.73 4.69 84.86 0.40 -1.33 15 13 N -0.95 -61.57 13.97 21.65 0.30 -61.27 15 14 Si 0.93 48.71 23.63 68.60 1.62 50.33 15 15 H -0.27 -13.04 6.35 99.48 0.63 -12.41 15 16 H -0.28 -14.20 7.01 99.48 0.70 -13.51 15 17 H -0.32 -16.76 7.11 99.48 0.71 -16.05 15 18 H 0.06 2.23 8.14 -2.39 -0.02 2.21 15 19 H 0.07 2.36 8.14 -2.39 -0.02 2.34 15 20 H 0.02 1.14 6.46 -2.39 -0.02 1.12 15 21 H 0.09 2.36 7.86 -2.39 -0.02 2.34 15 22 H 0.09 2.24 8.14 -2.39 -0.02 2.22 15 23 H 0.10 2.27 8.14 -2.38 -0.02 2.25 15 24 H 0.06 1.90 8.05 -2.39 -0.02 1.89 15 25 H 0.04 1.50 8.13 -2.38 -0.02 1.48 15 26 H 0.08 2.25 8.14 -2.39 -0.02 2.23 15 27 H 0.03 1.31 7.37 -2.39 -0.02 1.30 15 28 H 0.26 15.97 8.31 -92.71 -0.77 15.20 15 Total: -1.00 -67.58 217.57 4.27 -63.30 By element: Atomic # 1 Polarization: -2.80 SS G_CDS: 1.03 Total: -1.78 kcal Atomic # 6 Polarization: -22.04 SS G_CDS: 3.13 Total: -18.90 kcal Atomic # 7 Polarization: -91.45 SS G_CDS: -1.51 Total: -92.96 kcal Atomic # 14 Polarization: 48.71 SS G_CDS: 1.62 Total: 50.33 kcal Total: -67.58 4.27 -63.30 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000059569465.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.503 kcal (2) G-P(sol) polarization free energy of solvation -67.578 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.075 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.274 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.305 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.801 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.12 seconds