Wall clock time and date at job start Mon Mar 30 2020 01:41:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09001 * 110.88764 * 2 1 4 4 C 1.54627 * 110.97070 * 236.18415 * 2 1 3 5 5 C 1.51281 * 104.19898 * 266.67996 * 4 2 1 6 6 O 1.21288 * 124.94462 * 163.78173 * 5 4 2 7 7 N 1.34421 * 110.11189 * 343.74754 * 5 4 2 8 8 C 1.37095 * 124.34529 * 179.56899 * 7 5 4 9 9 H 1.07995 * 120.00293 * 349.72182 * 8 7 5 10 10 C 1.38957 * 119.99756 * 169.71924 * 8 7 5 11 11 N 1.31404 * 120.00131 * 350.20489 * 10 8 7 12 12 Si 1.86801 * 119.99889 * 170.20793 * 10 8 7 13 13 H 1.48498 * 109.47246 * 60.00008 * 12 10 8 14 14 H 1.48497 * 109.47101 * 180.02562 * 12 10 8 15 15 H 1.48507 * 109.46998 * 300.00258 * 12 10 8 16 16 C 1.46762 * 111.30526 * 359.59325 * 7 5 4 17 17 H 1.08997 * 109.47167 * 182.35790 * 1 2 3 18 18 H 1.09000 * 109.47303 * 302.35822 * 1 2 3 19 19 H 1.08998 * 109.46863 * 62.35990 * 1 2 3 20 20 H 1.09008 * 110.48288 * 148.00051 * 4 2 1 21 21 H 1.08999 * 110.48865 * 25.36036 * 4 2 1 22 22 H 0.96998 * 119.99877 * 179.97438 * 11 10 8 23 23 H 1.08996 * 110.25074 * 136.01465 * 16 7 5 24 24 H 1.08998 * 110.24293 * 257.93062 * 16 7 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9186 1.0184 0.0000 4 6 2.0834 -0.8035 -1.1996 5 6 2.2955 -2.1959 -0.6474 6 8 2.4526 -3.1933 -1.3194 7 7 2.2852 -2.1667 0.6965 8 6 2.4431 -3.2696 1.4953 9 1 2.4211 -4.2583 1.0614 10 6 2.6315 -3.1153 2.8634 11 7 2.8508 -1.9211 3.3659 12 14 2.5731 -4.6056 3.9881 13 1 3.6287 -5.5701 3.5871 14 1 2.8015 -4.1761 5.3912 15 1 1.2421 -5.2554 3.8802 16 6 2.0828 -0.8026 1.1987 17 1 -0.3633 -1.0268 0.0423 18 1 -0.3634 0.5500 0.8681 19 1 -0.3633 0.4767 -0.9104 20 1 3.0285 -0.3797 -1.5392 21 1 1.3584 -0.8222 -2.0133 22 1 2.9819 -1.8134 4.3209 23 1 1.3617 -0.8046 2.0160 24 1 3.0299 -0.3794 1.5330 RHF calculation, no. of doubly occupied orbitals= 31 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000062816693.mol2 24 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:41:25 Heat of formation + Delta-G solvation = -40.315969 kcal Electronic energy + Delta-G solvation = -9937.234297 eV Core-core repulsion = 8043.378813 eV Total energy + Delta-G solvation = -1893.855484 eV No. of doubly occupied orbitals = 31 Molecular weight (most abundant/longest-lived isotopes) = 169.084 amu Computer time = 0.09 seconds Orbital eigenvalues (eV) -39.13396 -35.20062 -33.56017 -30.94507 -27.53598 -25.84912 -24.22799 -19.87543 -19.11607 -16.97129 -15.23762 -15.04612 -14.24307 -13.75225 -13.18155 -12.82761 -12.31648 -12.13025 -11.63054 -11.46103 -11.00105 -10.78258 -10.42529 -10.30466 -10.17587 -9.96633 -9.07593 -8.29426 -7.77530 -6.34763 -3.82115 3.18003 3.23420 3.27674 3.94455 4.13642 5.07783 5.20579 5.29822 5.43753 5.55047 5.91460 6.09201 6.16632 6.39816 6.49681 6.56866 6.74047 7.10228 7.21552 7.51447 7.96909 8.51840 9.16563 9.36633 10.09798 10.72354 Molecular weight = 169.08amu Principal moments of inertia in cm(-1) A = 0.060631 B = 0.017814 C = 0.015139 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 461.698964 B = 1571.413903 C = 1849.076310 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.122 4.122 3 H 0.080 0.920 4 C -0.143 4.143 5 C 0.441 3.559 6 O -0.597 6.597 7 N -0.442 5.442 8 C -0.301 4.301 9 H 0.100 0.900 10 C 0.029 3.971 11 N -0.887 5.887 12 Si 0.930 3.070 13 H -0.273 1.273 14 H -0.283 1.283 15 H -0.273 1.273 16 C 0.140 3.860 17 H 0.056 0.944 18 H 0.054 0.946 19 H 0.049 0.951 20 H 0.082 0.918 21 H 0.079 0.921 22 H 0.269 0.731 23 H 0.079 0.921 24 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.941 5.134 -0.868 5.980 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.141 4.141 3 H 0.098 0.902 4 C -0.183 4.183 5 C 0.229 3.771 6 O -0.484 6.484 7 N -0.160 5.160 8 C -0.429 4.429 9 H 0.118 0.882 10 C -0.174 4.174 11 N -0.526 5.526 12 Si 0.757 3.243 13 H -0.198 1.198 14 H -0.209 1.209 15 H -0.199 1.199 16 C 0.016 3.984 17 H 0.075 0.925 18 H 0.073 0.927 19 H 0.068 0.932 20 H 0.101 0.899 21 H 0.098 0.902 22 H 0.079 0.921 23 H 0.097 0.903 24 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -2.820 4.666 -0.904 5.526 hybrid contribution 0.052 -0.516 0.743 0.906 sum -2.768 4.151 -0.161 4.992 Atomic orbital electron populations 1.21731 0.94883 1.02022 1.00777 1.22374 0.96035 0.99178 0.96497 0.90171 1.22233 1.01827 0.96021 0.98248 1.20302 0.83817 0.89943 0.83061 1.90506 1.57413 1.37469 1.62973 1.43929 1.60229 1.07141 1.04696 1.19588 1.47774 0.86818 0.88698 0.88187 1.25281 0.96466 0.98103 0.97541 1.69913 1.47234 1.21794 1.13703 0.85933 0.79055 0.80839 0.78505 1.19807 1.20855 1.19878 1.21888 1.01190 0.81698 0.93591 0.92511 0.92666 0.93180 0.89919 0.90221 0.92059 0.90309 0.91322 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.20 9.12 37.16 0.34 -1.86 14 2 C -0.12 -2.19 3.75 -88.99 -0.33 -2.52 14 3 H 0.08 1.22 8.14 -51.93 -0.42 0.80 14 4 C -0.14 -2.81 6.41 -26.74 -0.17 -2.98 14 5 C 0.44 11.52 7.97 -10.86 -0.09 11.44 14 6 O -0.60 -17.77 17.60 5.55 0.10 -17.67 14 7 N -0.44 -11.86 3.06 -113.62 -0.35 -12.20 14 8 C -0.30 -8.63 9.86 -14.93 -0.15 -8.78 14 9 H 0.10 2.96 7.72 -52.49 -0.41 2.56 14 10 C 0.03 0.77 5.39 -17.47 -0.09 0.67 14 11 N -0.89 -23.72 10.53 55.50 0.58 -23.14 14 12 Si 0.93 20.91 29.56 -169.99 -5.03 15.88 14 13 H -0.27 -6.13 7.11 56.52 0.40 -5.73 14 14 H -0.28 -6.19 7.11 56.52 0.40 -5.79 14 15 H -0.27 -6.08 7.11 56.52 0.40 -5.68 14 16 C 0.14 3.21 4.92 -3.12 -0.02 3.19 14 17 H 0.06 1.03 8.14 -51.93 -0.42 0.61 14 18 H 0.05 0.81 8.14 -51.93 -0.42 0.38 14 19 H 0.05 0.68 8.14 -51.93 -0.42 0.26 14 20 H 0.08 1.48 8.14 -51.92 -0.42 1.06 14 21 H 0.08 1.43 7.91 -51.93 -0.41 1.02 14 22 H 0.27 6.81 8.31 -40.82 -0.34 6.47 14 23 H 0.08 1.88 7.08 -51.93 -0.37 1.52 14 24 H 0.07 1.64 7.68 -51.93 -0.40 1.24 14 LS Contribution 208.90 15.07 3.15 3.15 Total: -1.00 -31.23 208.90 -4.88 -36.11 By element: Atomic # 1 Polarization: 1.54 SS G_CDS: -2.83 Total: -1.29 kcal Atomic # 6 Polarization: -0.34 SS G_CDS: -0.51 Total: -0.85 kcal Atomic # 7 Polarization: -35.58 SS G_CDS: 0.24 Total: -35.34 kcal Atomic # 8 Polarization: -17.77 SS G_CDS: 0.10 Total: -17.67 kcal Atomic # 14 Polarization: 20.91 SS G_CDS: -5.03 Total: 15.88 kcal Total LS contribution 3.15 Total: 3.15 kcal Total: -31.23 -4.88 -36.11 kcal The number of atoms in the molecule is 24 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000062816693.mol2 24 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.201 kcal (2) G-P(sol) polarization free energy of solvation -31.231 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.433 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.883 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.114 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.316 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.09 seconds