Wall clock time and date at job start Mon Mar 30 2020 01:41:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09001 * 110.88764 * 2 1 4 4 C 1.54627 * 110.97070 * 236.18415 * 2 1 3 5 5 C 1.51281 * 104.19898 * 266.67996 * 4 2 1 6 6 O 1.21288 * 124.94462 * 163.78173 * 5 4 2 7 7 N 1.34421 * 110.11189 * 343.74754 * 5 4 2 8 8 C 1.37095 * 124.34529 * 179.56899 * 7 5 4 9 9 H 1.07995 * 120.00293 * 349.72182 * 8 7 5 10 10 C 1.38957 * 119.99756 * 169.71924 * 8 7 5 11 11 N 1.31404 * 120.00131 * 350.20489 * 10 8 7 12 12 Si 1.86801 * 119.99889 * 170.20793 * 10 8 7 13 13 H 1.48498 * 109.47246 * 60.00008 * 12 10 8 14 14 H 1.48497 * 109.47101 * 180.02562 * 12 10 8 15 15 H 1.48507 * 109.46998 * 300.00258 * 12 10 8 16 16 C 1.46762 * 111.30526 * 359.59325 * 7 5 4 17 17 H 1.08997 * 109.47167 * 182.35790 * 1 2 3 18 18 H 1.09000 * 109.47303 * 302.35822 * 1 2 3 19 19 H 1.08998 * 109.46863 * 62.35990 * 1 2 3 20 20 H 1.09008 * 110.48288 * 148.00051 * 4 2 1 21 21 H 1.08999 * 110.48865 * 25.36036 * 4 2 1 22 22 H 0.96998 * 119.99877 * 179.97438 * 11 10 8 23 23 H 1.08996 * 110.25074 * 136.01465 * 16 7 5 24 24 H 1.08998 * 110.24293 * 257.93062 * 16 7 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9186 1.0184 0.0000 4 6 2.0834 -0.8035 -1.1996 5 6 2.2955 -2.1959 -0.6474 6 8 2.4526 -3.1933 -1.3194 7 7 2.2852 -2.1667 0.6965 8 6 2.4431 -3.2696 1.4953 9 1 2.4211 -4.2583 1.0614 10 6 2.6315 -3.1153 2.8634 11 7 2.8508 -1.9211 3.3659 12 14 2.5731 -4.6056 3.9881 13 1 3.6287 -5.5701 3.5871 14 1 2.8015 -4.1761 5.3912 15 1 1.2421 -5.2554 3.8802 16 6 2.0828 -0.8026 1.1987 17 1 -0.3633 -1.0268 0.0423 18 1 -0.3634 0.5500 0.8681 19 1 -0.3633 0.4767 -0.9104 20 1 3.0285 -0.3797 -1.5392 21 1 1.3584 -0.8222 -2.0133 22 1 2.9819 -1.8134 4.3209 23 1 1.3617 -0.8046 2.0160 24 1 3.0299 -0.3794 1.5330 RHF calculation, no. of doubly occupied orbitals= 31 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000062816693.mol2 24 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:41:25 Heat of formation + Delta-G solvation = -61.441613 kcal Electronic energy + Delta-G solvation = -9938.150374 eV Core-core repulsion = 8043.378813 eV Total energy + Delta-G solvation = -1894.771560 eV No. of doubly occupied orbitals = 31 Molecular weight (most abundant/longest-lived isotopes) = 169.084 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -41.01802 -37.21984 -35.44786 -32.88928 -29.16140 -27.69920 -26.10508 -21.52545 -21.02775 -19.03358 -17.21296 -16.86063 -16.10011 -15.70083 -14.76174 -14.44681 -14.24807 -13.81611 -13.49746 -13.16706 -12.78006 -12.52067 -12.22859 -12.00501 -11.77108 -11.59676 -11.06926 -10.33324 -9.84649 -8.41131 -5.98848 1.36055 1.38494 1.49774 1.96921 2.24571 3.06703 3.24291 3.74697 3.81635 4.10862 4.38260 4.69175 4.82653 4.93253 5.07327 5.17126 5.21813 5.31910 5.38099 5.53164 5.90630 6.45082 7.08999 7.32400 8.04352 8.63622 Molecular weight = 169.08amu Principal moments of inertia in cm(-1) A = 0.060631 B = 0.017814 C = 0.015139 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 461.698964 B = 1571.413903 C = 1849.076310 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.104 4.104 3 H 0.123 0.877 4 C -0.129 4.129 5 C 0.416 3.584 6 O -0.649 6.649 7 N -0.457 5.457 8 C -0.351 4.351 9 H 0.073 0.927 10 C -0.001 4.001 11 N -0.895 5.895 12 Si 0.995 3.005 13 H -0.274 1.274 14 H -0.265 1.265 15 H -0.269 1.269 16 C 0.141 3.859 17 H 0.025 0.975 18 H 0.070 0.930 19 H 0.083 0.917 20 H 0.105 0.895 21 H 0.103 0.897 22 H 0.277 0.723 23 H 0.062 0.938 24 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.403 6.625 -0.431 7.460 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.123 4.123 3 H 0.141 0.859 4 C -0.169 4.169 5 C 0.206 3.794 6 O -0.539 6.539 7 N -0.174 5.174 8 C -0.478 4.478 9 H 0.091 0.909 10 C -0.203 4.203 11 N -0.533 5.533 12 Si 0.818 3.182 13 H -0.199 1.199 14 H -0.189 1.189 15 H -0.194 1.194 16 C 0.018 3.982 17 H 0.045 0.955 18 H 0.089 0.911 19 H 0.102 0.898 20 H 0.124 0.876 21 H 0.121 0.879 22 H 0.087 0.913 23 H 0.081 0.919 24 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -3.287 6.207 -0.450 7.038 hybrid contribution 0.223 -0.967 0.648 1.185 sum -3.064 5.240 0.198 6.074 Atomic orbital electron populations 1.21736 0.93298 1.00786 1.03303 1.22417 0.97270 0.99999 0.92608 0.85922 1.22232 1.03829 0.91619 0.99239 1.21503 0.82869 0.92077 0.82963 1.90448 1.59496 1.40012 1.63986 1.44279 1.59731 1.08140 1.05282 1.19613 1.51100 0.86928 0.90165 0.90875 1.26100 0.94948 1.01259 0.98025 1.69994 1.45727 1.23119 1.14434 0.84974 0.79006 0.77264 0.76963 1.19883 1.18927 1.19427 1.21927 1.00314 0.80530 0.95477 0.95537 0.91140 0.89777 0.87638 0.87884 0.91312 0.91928 0.92755 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.89 9.12 71.98 0.66 -3.23 14 2 C -0.10 -3.42 3.75 -9.74 -0.04 -3.46 14 3 H 0.12 3.10 8.14 -2.39 -0.02 3.08 14 4 C -0.13 -4.78 6.41 30.59 0.20 -4.58 14 5 C 0.42 22.03 7.97 87.90 0.70 22.73 14 6 O -0.65 -39.93 17.60 -3.05 -0.05 -39.99 14 7 N -0.46 -25.03 3.06 -631.98 -1.93 -26.96 14 8 C -0.35 -20.78 9.86 84.04 0.83 -19.95 14 9 H 0.07 4.59 7.72 -2.91 -0.02 4.56 14 10 C 0.00 -0.07 5.39 84.93 0.46 0.39 14 11 N -0.89 -47.56 10.53 21.66 0.23 -47.33 14 12 Si 1.00 42.79 29.56 68.60 2.03 44.82 14 13 H -0.27 -11.76 7.11 99.48 0.71 -11.06 14 14 H -0.27 -10.57 7.11 99.48 0.71 -9.86 14 15 H -0.27 -11.36 7.11 99.48 0.71 -10.66 14 16 C 0.14 6.35 4.92 86.83 0.43 6.78 14 17 H 0.03 0.91 8.14 -2.39 -0.02 0.89 14 18 H 0.07 1.83 8.14 -2.39 -0.02 1.81 14 19 H 0.08 1.90 8.14 -2.39 -0.02 1.88 14 20 H 0.11 3.44 8.14 -2.38 -0.02 3.42 14 21 H 0.10 3.36 7.91 -2.39 -0.02 3.34 14 22 H 0.28 13.69 8.31 -92.71 -0.77 12.92 14 23 H 0.06 2.98 7.08 -2.39 -0.02 2.97 14 24 H 0.05 2.57 7.68 -2.39 -0.02 2.55 14 Total: -1.00 -69.63 208.90 4.68 -64.95 By element: Atomic # 1 Polarization: 4.66 SS G_CDS: 1.18 Total: 5.84 kcal Atomic # 6 Polarization: -4.56 SS G_CDS: 3.23 Total: -1.33 kcal Atomic # 7 Polarization: -72.59 SS G_CDS: -1.70 Total: -74.29 kcal Atomic # 8 Polarization: -39.93 SS G_CDS: -0.05 Total: -39.99 kcal Atomic # 14 Polarization: 42.79 SS G_CDS: 2.03 Total: 44.82 kcal Total: -69.63 4.68 -64.95 kcal The number of atoms in the molecule is 24 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000062816693.mol2 24 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.508 kcal (2) G-P(sol) polarization free energy of solvation -69.628 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.120 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.678 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.950 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.442 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds