Wall clock time and date at job start Mon Mar 30 2020 01:41:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08999 * 110.85254 * 2 1 4 4 C 1.54632 * 111.00432 * 123.80628 * 2 1 3 5 5 C 1.51283 * 104.19298 * 142.93203 * 4 2 1 6 6 O 1.21294 * 124.93880 * 164.01790 * 5 4 2 7 7 N 1.34424 * 110.11639 * 343.75014 * 5 4 2 8 8 C 1.37099 * 124.34646 * 179.61282 * 7 5 4 9 9 H 1.07994 * 120.00306 * 349.72640 * 8 7 5 10 10 C 1.38948 * 119.99751 * 169.72620 * 8 7 5 11 11 N 1.31420 * 120.00071 * 350.20819 * 10 8 7 12 12 Si 1.86797 * 120.00110 * 170.20765 * 10 8 7 13 13 H 1.48503 * 109.47027 * 0.02562 * 12 10 8 14 14 H 1.48505 * 109.47165 * 119.99634 * 12 10 8 15 15 H 1.48498 * 109.47214 * 239.99748 * 12 10 8 16 16 C 1.46757 * 111.30047 * 359.59466 * 7 5 4 17 17 H 1.08999 * 109.46701 * 183.79532 * 1 2 3 18 18 H 1.08996 * 109.47106 * 303.78842 * 1 2 3 19 19 H 1.08989 * 109.47539 * 63.79350 * 1 2 3 20 20 H 1.08998 * 110.48174 * 24.26130 * 4 2 1 21 21 H 1.08990 * 110.49049 * 261.61376 * 4 2 1 22 22 H 0.97000 * 119.99873 * 180.02562 * 11 10 8 23 23 H 1.08997 * 110.24687 * 136.01426 * 16 7 5 24 24 H 1.09008 * 110.24311 * 258.01401 * 16 7 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9180 1.0186 0.0000 4 6 2.0842 -0.8032 1.1995 5 6 3.3097 -1.4970 0.6468 6 8 4.1841 -2.0025 1.3186 7 7 3.2857 -1.4770 -0.6971 8 6 4.2595 -2.0179 -1.4962 9 1 5.1912 -2.3501 -1.0626 10 6 4.0478 -2.1387 -2.8642 11 7 2.8537 -1.9174 -3.3664 12 14 5.4605 -2.6157 -3.9894 13 1 6.6924 -2.8086 -3.1828 14 1 5.1274 -3.8802 -4.6933 15 1 5.6847 -1.5383 -4.9865 16 6 2.0829 -0.8022 -1.1988 17 1 -0.3633 -1.0254 0.0680 18 1 -0.3633 0.5715 0.8541 19 1 -0.3634 0.4538 -0.9219 20 1 1.3519 -1.5356 1.5392 21 1 2.3600 -0.1324 2.0131 22 1 2.7059 -2.0021 -4.3213 23 1 2.3413 -0.1290 -2.0161 24 1 1.3494 -1.5367 -1.5316 RHF calculation, no. of doubly occupied orbitals= 31 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000062816694.mol2 24 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:41:26 Heat of formation + Delta-G solvation = -62.039781 kcal Electronic energy + Delta-G solvation = -9876.716234 eV Core-core repulsion = 7981.918735 eV Total energy + Delta-G solvation = -1894.797499 eV No. of doubly occupied orbitals = 31 Molecular weight (most abundant/longest-lived isotopes) = 169.084 amu Computer time = 0.09 seconds Orbital eigenvalues (eV) -40.98359 -37.23648 -35.49127 -33.00401 -29.23229 -27.68412 -25.86817 -21.46960 -21.09477 -19.06128 -17.51087 -16.79434 -16.08168 -15.64882 -14.79585 -14.61415 -14.07147 -13.78903 -13.21761 -13.17261 -12.87756 -12.57920 -12.32959 -12.06161 -11.75781 -11.50405 -11.05646 -10.35554 -9.86499 -8.42258 -6.00372 1.32840 1.38485 1.53140 1.94625 2.24058 3.05168 3.21551 3.76011 3.81277 4.05187 4.46418 4.66433 4.87786 4.90054 5.04826 5.17472 5.29012 5.33057 5.37040 5.56611 5.89405 6.43645 7.07484 7.30561 8.02277 8.62888 Molecular weight = 169.08amu Principal moments of inertia in cm(-1) A = 0.060820 B = 0.017562 C = 0.014034 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 460.266337 B = 1593.939756 C = 1994.678080 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.105 4.105 3 H 0.091 0.909 4 C -0.127 4.127 5 C 0.415 3.585 6 O -0.647 6.647 7 N -0.460 5.460 8 C -0.351 4.351 9 H 0.074 0.926 10 C -0.002 4.002 11 N -0.895 5.895 12 Si 0.997 3.003 13 H -0.275 1.275 14 H -0.270 1.270 15 H -0.264 1.264 16 C 0.142 3.858 17 H 0.053 0.947 18 H 0.083 0.917 19 H 0.066 0.934 20 H 0.104 0.896 21 H 0.103 0.897 22 H 0.277 0.723 23 H 0.059 0.941 24 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.936 4.787 0.431 7.638 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.124 4.124 3 H 0.110 0.890 4 C -0.167 4.167 5 C 0.205 3.795 6 O -0.538 6.538 7 N -0.177 5.177 8 C -0.478 4.478 9 H 0.092 0.908 10 C -0.204 4.204 11 N -0.533 5.533 12 Si 0.820 3.180 13 H -0.199 1.199 14 H -0.195 1.195 15 H -0.188 1.188 16 C 0.019 3.981 17 H 0.073 0.927 18 H 0.102 0.898 19 H 0.085 0.915 20 H 0.122 0.878 21 H 0.122 0.878 22 H 0.087 0.913 23 H 0.077 0.923 24 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -5.584 4.524 0.457 7.202 hybrid contribution 0.842 -0.487 -0.658 1.174 sum -4.742 4.038 -0.201 6.232 Atomic orbital electron populations 1.21660 0.91070 1.02445 1.03206 1.22375 0.98467 0.98892 0.92712 0.89023 1.22228 0.95032 1.00213 0.99220 1.21536 0.89806 0.85205 0.82961 1.90452 1.44529 1.54812 1.63974 1.44346 1.20005 1.48033 1.05359 1.19704 0.96699 1.41244 0.90174 0.90795 1.26126 1.00202 0.96026 0.98035 1.70018 1.21318 1.47568 1.14401 0.84828 0.77290 0.78434 0.77466 1.19921 1.19497 1.18842 1.21933 0.85756 0.95036 0.95346 0.92743 0.89824 0.91519 0.87757 0.87837 0.91307 0.92303 0.92492 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.13 9.14 71.98 0.66 -2.47 14 2 C -0.11 -3.53 3.75 -9.74 -0.04 -3.56 14 3 H 0.09 2.81 8.14 -2.39 -0.02 2.79 14 4 C -0.13 -4.73 6.42 30.59 0.20 -4.54 14 5 C 0.42 22.09 7.97 87.90 0.70 22.79 14 6 O -0.65 -39.89 17.61 -3.07 -0.05 -39.95 14 7 N -0.46 -25.38 3.06 -631.98 -1.93 -27.31 14 8 C -0.35 -20.86 9.86 84.04 0.83 -20.04 14 9 H 0.07 4.66 7.72 -2.91 -0.02 4.64 14 10 C 0.00 -0.11 5.39 84.92 0.46 0.35 14 11 N -0.89 -47.66 10.53 21.66 0.23 -47.44 14 12 Si 1.00 42.82 29.56 68.60 2.03 44.85 14 13 H -0.27 -12.00 7.11 99.48 0.71 -11.30 14 14 H -0.27 -11.10 7.11 99.48 0.71 -10.39 14 15 H -0.26 -10.62 7.11 99.48 0.71 -9.91 14 16 C 0.14 6.48 4.93 86.83 0.43 6.91 14 17 H 0.05 1.38 8.06 -2.39 -0.02 1.36 14 18 H 0.08 1.59 8.14 -2.39 -0.02 1.57 14 19 H 0.07 1.55 8.14 -2.39 -0.02 1.53 14 20 H 0.10 3.48 7.84 -2.39 -0.02 3.46 14 21 H 0.10 3.36 8.14 -2.39 -0.02 3.35 14 22 H 0.28 13.63 8.31 -92.71 -0.77 12.86 14 23 H 0.06 2.83 7.31 -2.39 -0.02 2.82 14 24 H 0.06 2.71 7.43 -2.38 -0.02 2.69 14 Total: -1.00 -69.61 208.77 4.68 -64.93 By element: Atomic # 1 Polarization: 4.29 SS G_CDS: 1.18 Total: 5.47 kcal Atomic # 6 Polarization: -3.78 SS G_CDS: 3.23 Total: -0.55 kcal Atomic # 7 Polarization: -73.05 SS G_CDS: -1.70 Total: -74.75 kcal Atomic # 8 Polarization: -39.89 SS G_CDS: -0.05 Total: -39.95 kcal Atomic # 14 Polarization: 42.82 SS G_CDS: 2.03 Total: 44.85 kcal Total: -69.61 4.68 -64.93 kcal The number of atoms in the molecule is 24 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000062816694.mol2 24 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.892 kcal (2) G-P(sol) polarization free energy of solvation -69.612 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.721 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.681 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.931 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.040 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.09 seconds