Wall clock time and date at job start Mon Mar 30 2020 02:02:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.08999 * 110.43340 * 2 1 4 4 C 1.54887 * 110.48734 * 237.45993 * 2 1 3 5 5 C 1.54885 * 102.74818 * 203.37940 * 4 2 1 6 6 C 1.54261 * 104.19672 * 37.94179 * 5 4 2 7 7 C 1.54089 * 106.61998 * 336.27987 * 6 5 4 8 8 H 1.09005 * 110.00238 * 119.38670 * 7 6 5 9 9 N 1.46507 * 110.15852 * 240.87788 * 7 6 5 10 10 C 1.36934 * 119.99805 * 272.11834 * 9 7 6 11 11 H 1.08005 * 120.00649 * 359.97438 * 10 9 7 12 12 C 1.38812 * 119.99680 * 180.02562 * 10 9 7 13 13 N 1.31623 * 120.00031 * 359.97438 * 12 10 9 14 14 Si 1.86799 * 120.00084 * 179.97438 * 12 10 9 15 15 H 1.48498 * 109.47102 * 0.02562 * 14 12 10 16 16 H 1.48503 * 109.47033 * 119.99604 * 14 12 10 17 17 H 1.48495 * 109.47331 * 239.99945 * 14 12 10 18 18 H 1.09001 * 109.47002 * 179.29570 * 1 2 3 19 19 H 1.08993 * 109.46955 * 299.30007 * 1 2 3 20 20 H 1.09000 * 109.47050 * 59.29836 * 1 2 3 21 21 H 1.08999 * 110.76007 * 321.69306 * 4 2 1 22 22 H 1.09007 * 110.75558 * 85.06162 * 4 2 1 23 23 H 1.08997 * 110.48593 * 156.62713 * 5 4 2 24 24 H 1.09004 * 110.48636 * 279.12886 * 5 4 2 25 25 H 1.08998 * 110.02982 * 95.67683 * 6 5 4 26 26 H 1.08999 * 110.03361 * 217.05749 * 6 5 4 27 27 H 0.97002 * 119.99571 * 92.11613 * 9 7 6 28 28 H 0.97003 * 119.99755 * 179.97438 * 13 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.9106 1.0214 0.0000 4 6 2.0722 -0.7804 -1.2231 5 6 3.4907 -1.1969 -0.7615 6 6 3.3166 -1.5414 0.7321 7 6 2.0699 -0.7773 1.2182 8 1 1.3176 -1.4803 1.5759 9 7 2.4345 0.1556 2.2874 10 6 2.4434 -0.2659 3.5902 11 1 2.1812 -1.2859 3.8297 12 6 2.7883 0.6181 4.6033 13 7 3.1073 1.8613 4.3116 14 14 2.7997 0.0434 6.3807 15 1 2.4065 -1.3873 6.4408 16 1 4.1639 0.2054 6.9445 17 1 1.8384 0.8550 7.1695 18 1 -0.3633 -1.0276 -0.0126 19 1 -0.3633 0.5029 0.8961 20 1 -0.3633 0.5247 -0.8836 21 1 1.4582 -1.6583 -1.4244 22 1 2.1252 -0.1355 -2.1003 23 1 3.8317 -2.0704 -1.3172 24 1 4.1903 -0.3703 -0.8854 25 1 3.1693 -2.6146 0.8530 26 1 4.1932 -1.2194 1.2942 27 1 2.6697 1.0718 2.0723 28 1 3.3480 2.4791 5.0196 RHF calculation, no. of doubly occupied orbitals= 32 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000070830982.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:02:44 Heat of formation + Delta-G solvation = -30.734258 kcal Electronic energy + Delta-G solvation = -9926.541601 eV Core-core repulsion = 8168.934705 eV Total energy + Delta-G solvation = -1757.606895 eV No. of doubly occupied orbitals = 32 Molecular weight (most abundant/longest-lived isotopes) = 169.116 amu Computer time = 0.11 seconds Orbital eigenvalues (eV) -39.46265 -35.52448 -32.48298 -32.02515 -28.22684 -26.18208 -24.57388 -21.30370 -20.62020 -18.97355 -17.12709 -16.07440 -15.78059 -15.21700 -14.59606 -14.31554 -13.84000 -13.32113 -12.98550 -12.86785 -12.50958 -12.18607 -12.07080 -11.75756 -11.64511 -11.40605 -11.33911 -11.20913 -10.89352 -8.96741 -7.94195 -5.21827 1.45673 1.46702 1.56757 2.56117 3.38107 3.80475 3.87532 3.96715 4.30578 4.48308 4.68750 4.70064 4.74196 4.84435 4.94447 5.08063 5.14172 5.18604 5.31755 5.39817 5.46463 5.54180 5.59281 5.69073 6.29536 7.33752 8.13335 8.35595 9.29856 Molecular weight = 169.12amu Principal moments of inertia in cm(-1) A = 0.069897 B = 0.012628 C = 0.011929 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 400.493235 B = 2216.818413 C = 2346.600047 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.103 4.103 3 H 0.055 0.945 4 C -0.106 4.106 5 C -0.116 4.116 6 C -0.145 4.145 7 C 0.166 3.834 8 H 0.041 0.959 9 N -0.735 5.735 10 C -0.237 4.237 11 H 0.073 0.927 12 C -0.080 4.080 13 N -0.972 5.972 14 Si 0.972 3.028 15 H -0.267 1.267 16 H -0.293 1.293 17 H -0.293 1.293 18 H 0.062 0.938 19 H 0.031 0.969 20 H 0.070 0.930 21 H 0.081 0.919 22 H 0.079 0.921 23 H 0.079 0.921 24 H 0.053 0.947 25 H 0.059 0.941 26 H 0.037 0.963 27 H 0.370 0.630 28 H 0.250 0.750 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.727 -6.045 -9.972 11.976 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.122 4.122 3 H 0.073 0.927 4 C -0.144 4.144 5 C -0.153 4.153 6 C -0.185 4.185 7 C 0.057 3.943 8 H 0.059 0.941 9 N -0.375 5.375 10 C -0.369 4.369 11 H 0.091 0.909 12 C -0.272 4.272 13 N -0.623 5.623 14 Si 0.802 3.198 15 H -0.191 1.191 16 H -0.221 1.221 17 H -0.220 1.220 18 H 0.081 0.919 19 H 0.051 0.949 20 H 0.089 0.911 21 H 0.100 0.900 22 H 0.098 0.902 23 H 0.098 0.902 24 H 0.072 0.928 25 H 0.078 0.922 26 H 0.056 0.944 27 H 0.202 0.798 28 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges -2.767 -6.183 -9.818 11.928 hybrid contribution 0.334 0.403 1.296 1.398 sum -2.433 -5.780 -8.521 10.580 Atomic orbital electron populations 1.21683 0.94255 1.01922 1.01085 1.22207 0.96316 0.98718 0.94991 0.92681 1.22480 0.95607 0.99941 0.96332 1.22273 0.97476 1.01040 0.94559 1.22876 0.99172 0.99634 0.96807 1.21288 0.93939 0.91170 0.87875 0.94088 1.42740 1.81609 1.10732 1.02385 1.19683 1.36532 0.95718 0.84919 0.90949 1.25566 1.03444 0.96107 1.02102 1.69835 1.54967 1.05104 1.32413 0.85079 0.76743 0.77749 0.80269 1.19115 1.22075 1.21983 0.91902 0.94933 0.91125 0.90049 0.90218 0.90191 0.92774 0.92223 0.94449 0.79788 0.94113 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.94 9.11 71.98 0.66 -3.29 15 2 C -0.10 -3.47 3.15 -9.72 -0.03 -3.50 15 3 H 0.05 2.05 7.74 -2.39 -0.02 2.03 15 4 C -0.11 -2.74 6.33 31.88 0.20 -2.54 15 5 C -0.12 -3.31 6.83 31.67 0.22 -3.09 15 6 C -0.14 -5.34 6.60 31.39 0.21 -5.13 15 7 C 0.17 6.86 3.13 45.78 0.14 7.00 15 8 H 0.04 1.74 7.78 -2.38 -0.02 1.72 15 9 N -0.74 -38.80 5.04 -319.16 -1.61 -40.41 15 10 C -0.24 -13.62 9.96 84.03 0.84 -12.78 15 11 H 0.07 4.03 7.83 -2.91 -0.02 4.01 15 12 C -0.08 -4.76 5.50 84.86 0.47 -4.29 15 13 N -0.97 -61.19 13.06 21.65 0.28 -60.91 15 14 Si 0.97 47.37 29.55 68.60 2.03 49.39 15 15 H -0.27 -12.21 7.11 99.48 0.71 -11.50 15 16 H -0.29 -14.25 7.11 99.48 0.71 -13.55 15 17 H -0.29 -14.18 7.11 99.48 0.71 -13.47 15 18 H 0.06 1.68 8.14 -2.39 -0.02 1.66 15 19 H 0.03 1.12 8.14 -2.39 -0.02 1.10 15 20 H 0.07 1.73 8.14 -2.39 -0.02 1.71 15 21 H 0.08 1.83 8.06 -2.39 -0.02 1.81 15 22 H 0.08 1.76 8.14 -2.38 -0.02 1.74 15 23 H 0.08 1.88 8.14 -2.39 -0.02 1.86 15 24 H 0.05 1.60 8.14 -2.38 -0.02 1.58 15 25 H 0.06 2.01 8.14 -2.39 -0.02 1.99 15 26 H 0.04 1.60 7.92 -2.39 -0.02 1.58 15 27 H 0.37 21.03 7.55 -92.71 -0.70 20.33 15 28 H 0.25 15.19 8.31 -92.71 -0.77 14.42 15 Total: -1.00 -64.32 231.76 3.82 -60.51 By element: Atomic # 1 Polarization: 18.61 SS G_CDS: 0.42 Total: 19.03 kcal Atomic # 6 Polarization: -30.31 SS G_CDS: 2.70 Total: -27.62 kcal Atomic # 7 Polarization: -99.99 SS G_CDS: -1.33 Total: -101.32 kcal Atomic # 14 Polarization: 47.37 SS G_CDS: 2.03 Total: 49.39 kcal Total: -64.32 3.82 -60.51 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000070830982.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.774 kcal (2) G-P(sol) polarization free energy of solvation -64.323 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.550 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.815 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.508 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.734 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.11 seconds