Wall clock time and date at job start Mon Mar 30 2020 01:46:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86799 * 120.00279 * 2 1 4 4 H 1.48498 * 109.47123 * 270.00109 * 3 2 1 5 5 H 1.48506 * 109.46940 * 30.00231 * 3 2 1 6 6 H 1.48493 * 109.47121 * 149.99652 * 3 2 1 7 7 C 1.37875 * 119.99809 * 179.97438 * 2 1 3 8 8 H 1.08005 * 120.00135 * 0.02562 * 7 2 1 9 9 C 1.50698 * 120.00046 * 179.97438 * 7 2 1 10 10 C 1.53006 * 109.47184 * 180.02562 * 9 7 2 11 11 H 1.08999 * 109.50246 * 55.00043 * 10 9 7 12 12 C 1.53118 * 109.50366 * 175.08004 * 10 9 7 13 13 C 1.53116 * 109.15772 * 177.55807 * 12 10 9 14 14 C 1.53041 * 109.31320 * 302.40372 * 13 12 10 15 15 N 1.46847 * 109.51842 * 59.16168 * 14 13 12 16 16 C 1.46852 * 111.19742 * 298.25658 * 15 14 13 17 17 H 0.97004 * 119.99097 * 359.97438 * 1 2 3 18 18 H 1.09001 * 109.46665 * 60.00499 * 9 7 2 19 19 H 1.08993 * 109.47304 * 300.00055 * 9 7 2 20 20 H 1.08996 * 109.52383 * 297.50491 * 12 10 9 21 21 H 1.09000 * 109.52156 * 57.69140 * 12 10 9 22 22 H 1.09002 * 109.50594 * 182.44592 * 13 12 10 23 23 H 1.08996 * 109.50411 * 62.36662 * 13 12 10 24 24 H 1.08994 * 109.46172 * 299.14772 * 14 13 12 25 25 H 1.08996 * 109.46298 * 179.17295 * 14 13 12 26 26 H 1.00895 * 111.00255 * 62.35708 * 15 14 13 27 27 H 1.09004 * 109.46451 * 301.72503 * 16 15 14 28 28 H 1.09001 * 109.46477 * 181.75793 * 16 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2493 1.6177 0.0000 4 1 2.4968 2.0464 -1.4001 5 1 1.4467 2.6526 0.7001 6 1 3.5467 1.4401 0.7001 7 6 2.0045 -1.1941 0.0005 8 1 1.4645 -2.1294 0.0005 9 6 3.5115 -1.1941 0.0000 10 6 4.0215 -2.6367 0.0001 11 1 3.5868 -3.1764 -0.8413 12 6 5.5476 -2.6394 -0.1243 13 6 6.0543 -4.0830 -0.0620 14 6 5.5930 -4.7252 1.2483 15 7 4.1265 -4.6988 1.3181 16 6 3.6191 -3.3208 1.3085 17 1 -0.4849 0.8402 0.0004 18 1 3.8751 -0.6798 0.8895 19 1 3.8745 -0.6809 -0.8904 20 1 5.8364 -2.1921 -1.0754 21 1 5.9809 -2.0662 0.6953 22 1 7.1434 -4.0887 -0.1064 23 1 5.6528 -4.6462 -0.9044 24 1 6.0067 -4.1700 2.0901 25 1 5.9400 -5.7577 1.2886 26 1 3.7191 -5.2393 0.5698 27 1 4.0420 -2.7722 2.1502 28 1 2.5324 -3.3332 1.3926 RHF calculation, no. of doubly occupied orbitals= 32 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000072231546.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:46:49 Heat of formation + Delta-G solvation = -25.200497 kcal Electronic energy + Delta-G solvation = -9946.214609 eV Core-core repulsion = 8188.847675 eV Total energy + Delta-G solvation = -1757.366933 eV No. of doubly occupied orbitals = 32 Molecular weight (most abundant/longest-lived isotopes) = 169.116 amu Computer time = 0.10 seconds Orbital eigenvalues (eV) -38.41737 -33.51916 -31.67478 -30.91505 -27.26485 -23.10721 -23.06364 -20.59049 -19.38627 -16.70616 -15.43157 -14.56490 -14.33431 -14.18143 -13.35268 -12.57169 -12.49176 -12.00062 -11.66752 -11.42308 -10.98241 -10.82923 -10.65727 -10.38289 -10.10966 -9.70421 -9.40304 -9.06033 -8.53473 -7.83000 -6.03010 -4.00456 3.31060 3.38677 3.42569 4.46281 4.77008 5.12981 5.30659 5.33317 5.39807 5.71210 5.82601 5.89912 6.05044 6.16633 6.30993 6.40196 6.48325 6.70187 6.81222 6.98505 7.23510 7.41638 7.52802 7.78513 7.83569 8.55237 9.01655 9.59951 11.10298 Molecular weight = 169.12amu Principal moments of inertia in cm(-1) A = 0.076358 B = 0.012992 C = 0.011733 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 366.606026 B = 2154.597821 C = 2385.894273 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.904 5.904 2 C 0.066 3.934 3 Si 0.879 3.121 4 H -0.278 1.278 5 H -0.288 1.288 6 H -0.266 1.266 7 C -0.517 4.517 8 H 0.073 0.927 9 C -0.006 4.006 10 C -0.107 4.107 11 H 0.060 0.940 12 C -0.118 4.118 13 C -0.156 4.156 14 C 0.057 3.943 15 N -0.692 5.692 16 C 0.068 3.932 17 H 0.262 0.738 18 H 0.015 0.985 19 H 0.009 0.991 20 H 0.055 0.945 21 H 0.056 0.944 22 H 0.057 0.943 23 H 0.057 0.943 24 H 0.067 0.933 25 H 0.065 0.935 26 H 0.336 0.664 27 H 0.063 0.937 28 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.446 -5.603 0.641 11.872 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.543 5.543 2 C -0.135 4.135 3 Si 0.706 3.294 4 H -0.204 1.204 5 H -0.214 1.214 6 H -0.191 1.191 7 C -0.555 4.555 8 H 0.091 0.909 9 C -0.044 4.044 10 C -0.127 4.127 11 H 0.078 0.922 12 C -0.156 4.156 13 C -0.195 4.195 14 C -0.073 4.073 15 N -0.320 5.320 16 C -0.061 4.061 17 H 0.072 0.928 18 H 0.034 0.966 19 H 0.028 0.972 20 H 0.074 0.926 21 H 0.075 0.925 22 H 0.076 0.924 23 H 0.076 0.924 24 H 0.086 0.914 25 H 0.083 0.917 26 H 0.152 0.848 27 H 0.082 0.918 28 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges 10.266 -5.548 1.360 11.748 hybrid contribution 0.540 1.289 -1.080 1.766 sum 10.806 -4.259 0.280 11.619 Atomic orbital electron populations 1.69922 1.06265 1.26803 1.51307 1.25033 0.94709 0.99119 0.94665 0.86795 0.80372 0.83786 0.78416 1.20423 1.21418 1.19095 1.21148 0.89420 0.94378 1.50517 0.90877 1.19562 0.97169 0.91552 0.96145 1.21690 0.92879 0.99777 0.98393 0.92162 1.21699 0.97378 0.95274 1.01246 1.22268 1.00329 0.97757 0.99189 1.21973 0.89184 0.99775 0.96331 1.60788 1.05583 1.14347 1.51245 1.22064 1.01255 0.86312 0.96436 0.92798 0.96624 0.97228 0.92640 0.92503 0.92438 0.92418 0.91431 0.91689 0.84779 0.91812 0.89409 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.97 13.96 55.43 0.77 -27.20 15 2 C 0.07 1.92 5.47 -17.82 -0.10 1.82 15 3 Si 0.88 21.94 27.47 -169.99 -4.67 17.27 15 4 H -0.28 -6.84 7.11 56.52 0.40 -6.44 15 5 H -0.29 -7.13 7.11 56.52 0.40 -6.73 15 6 H -0.27 -6.42 6.54 56.52 0.37 -6.05 15 7 C -0.52 -14.61 8.97 -34.44 -0.31 -14.92 15 8 H 0.07 2.21 7.31 -52.48 -0.38 1.82 15 9 C -0.01 -0.15 3.52 -27.88 -0.10 -0.25 15 10 C -0.11 -2.13 2.28 -90.54 -0.21 -2.34 15 11 H 0.06 1.24 8.14 -51.93 -0.42 0.82 15 12 C -0.12 -1.97 5.29 -26.61 -0.14 -2.11 15 13 C -0.16 -2.16 6.08 -26.65 -0.16 -2.32 15 14 C 0.06 0.80 6.56 -3.83 -0.03 0.77 15 15 N -0.69 -11.17 6.87 -113.81 -0.78 -11.95 15 16 C 0.07 1.30 5.63 -3.83 -0.02 1.28 15 17 H 0.26 7.61 8.31 -40.82 -0.34 7.27 15 18 H 0.02 0.38 7.20 -51.93 -0.37 0.00 15 19 H 0.01 0.23 7.57 -51.93 -0.39 -0.16 15 20 H 0.05 0.91 8.14 -51.93 -0.42 0.48 15 21 H 0.06 0.94 8.14 -51.93 -0.42 0.52 15 22 H 0.06 0.69 8.14 -51.93 -0.42 0.27 15 23 H 0.06 0.79 8.14 -51.93 -0.42 0.36 15 24 H 0.07 0.95 8.14 -51.93 -0.42 0.52 15 25 H 0.06 0.78 8.14 -51.93 -0.42 0.35 15 26 H 0.34 5.08 8.86 -39.29 -0.35 4.73 15 27 H 0.06 1.23 8.14 -51.93 -0.42 0.81 15 28 H 0.09 1.87 6.98 -51.93 -0.36 1.51 15 LS Contribution 224.21 15.07 3.38 3.38 Total: -1.00 -29.68 224.21 -6.77 -36.45 By element: Atomic # 1 Polarization: 4.51 SS G_CDS: -4.41 Total: 0.10 kcal Atomic # 6 Polarization: -17.00 SS G_CDS: -1.06 Total: -18.06 kcal Atomic # 7 Polarization: -39.14 SS G_CDS: -0.01 Total: -39.14 kcal Atomic # 14 Polarization: 21.94 SS G_CDS: -4.67 Total: 17.27 kcal Total LS contribution 3.38 Total: 3.38 kcal Total: -29.68 -6.77 -36.45 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000072231546.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.252 kcal (2) G-P(sol) polarization free energy of solvation -29.684 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.432 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.769 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.453 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.200 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.10 seconds