Wall clock time and date at job start Mon Mar 30 2020 01:46:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86802 * 119.99877 * 2 1 4 4 H 1.48502 * 109.47104 * 240.00286 * 3 2 1 5 5 H 1.48497 * 109.46929 * 0.02562 * 3 2 1 6 6 H 1.48502 * 109.46960 * 120.00227 * 3 2 1 7 7 C 1.37878 * 120.00213 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00426 * 179.97438 * 7 2 1 9 9 C 1.50698 * 119.99725 * 359.97438 * 7 2 1 10 10 C 1.53006 * 109.47012 * 180.02562 * 9 7 2 11 11 H 1.09007 * 109.49622 * 304.91631 * 10 9 7 12 12 C 1.53203 * 109.49217 * 184.82471 * 10 9 7 13 13 C 1.53123 * 109.11533 * 182.41941 * 12 10 9 14 14 C 1.53039 * 109.31189 * 57.63615 * 13 12 10 15 15 N 1.46856 * 109.51787 * 300.79882 * 14 13 12 16 16 C 1.46846 * 111.19871 * 61.74404 * 15 14 13 17 17 H 0.96994 * 120.00357 * 359.97438 * 1 2 3 18 18 H 1.08999 * 109.47189 * 60.00372 * 9 7 2 19 19 H 1.09002 * 109.47296 * 300.00100 * 9 7 2 20 20 H 1.08994 * 109.57907 * 62.50732 * 12 10 9 21 21 H 1.08997 * 109.51203 * 302.28996 * 12 10 9 22 22 H 1.09002 * 109.50371 * 297.67165 * 13 12 10 23 23 H 1.09003 * 109.50070 * 177.59325 * 13 12 10 24 24 H 1.09000 * 109.46148 * 60.81334 * 14 13 12 25 25 H 1.09002 * 109.46208 * 180.79044 * 14 13 12 26 26 H 1.00903 * 110.99558 * 185.83726 * 15 14 13 27 27 H 1.09004 * 109.46012 * 58.27074 * 16 15 14 28 28 H 1.08994 * 109.46057 * 178.23653 * 16 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1028 1.6965 -1.2126 5 1 1.2841 2.7464 0.0006 6 1 3.1029 1.6964 1.2125 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1941 -0.0010 9 6 1.2511 -2.4991 -0.0005 10 6 2.2454 -3.6621 -0.0005 11 1 2.9288 -3.5564 -0.8431 12 6 1.4837 -4.9858 -0.1220 13 6 2.4814 -6.1458 -0.0603 14 6 3.2700 -6.0661 1.2488 15 7 3.9806 -4.7826 1.3161 16 6 3.0409 -3.6542 1.3067 17 1 -0.4850 0.8400 0.0004 18 1 0.6241 -2.5567 -0.8903 19 1 0.6247 -2.5571 0.8897 20 1 0.9502 -5.0144 -1.0720 21 1 0.7723 -5.0732 0.6992 22 1 3.1686 -6.0800 -0.9038 23 1 1.9422 -7.0921 -0.1032 24 1 2.5835 -6.1458 2.0917 25 1 3.9908 -6.8827 1.2889 26 1 4.5829 -4.7448 2.1248 27 1 2.3555 -3.7454 2.1494 28 1 3.5951 -2.7194 1.3891 RHF calculation, no. of doubly occupied orbitals= 32 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000072231547.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:46:50 Heat of formation + Delta-G solvation = -46.921245 kcal Electronic energy + Delta-G solvation = -9900.339082 eV Core-core repulsion = 8142.030266 eV Total energy + Delta-G solvation = -1758.308816 eV No. of doubly occupied orbitals = 32 Molecular weight (most abundant/longest-lived isotopes) = 169.116 amu Computer time = 0.11 seconds Orbital eigenvalues (eV) -39.57261 -35.47817 -33.44452 -32.34813 -28.63392 -25.24210 -24.52875 -22.20289 -20.39550 -18.42320 -17.33612 -16.44097 -15.64882 -15.28239 -14.74330 -14.55884 -14.06702 -13.52528 -13.44778 -13.05928 -12.69503 -12.53774 -12.02799 -11.83604 -11.65475 -11.39620 -10.95653 -10.72408 -10.53803 -9.33586 -8.18103 -6.28334 1.40102 1.43188 1.51048 2.42053 3.14134 3.39734 4.02030 4.09821 4.11425 4.36953 4.59569 4.72625 4.76611 4.86012 5.02040 5.08655 5.15584 5.24261 5.39529 5.41330 5.53847 5.76488 5.86968 6.15824 6.28272 6.61624 6.87267 7.40357 8.93697 Molecular weight = 169.12amu Principal moments of inertia in cm(-1) A = 0.081206 B = 0.012002 C = 0.010934 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 344.719269 B = 2332.467850 C = 2560.190809 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.936 5.936 2 C -0.002 4.002 3 Si 0.963 3.037 4 H -0.268 1.268 5 H -0.284 1.284 6 H -0.266 1.266 7 C -0.533 4.533 8 H 0.060 0.940 9 C 0.033 3.967 10 C -0.072 4.072 11 H 0.052 0.948 12 C -0.116 4.116 13 C -0.111 4.111 14 C 0.057 3.943 15 N -0.696 5.696 16 C 0.082 3.918 17 H 0.263 0.737 18 H -0.011 1.011 19 H -0.012 1.012 20 H 0.055 0.945 21 H 0.048 0.952 22 H 0.064 0.936 23 H 0.085 0.915 24 H 0.026 0.974 25 H 0.095 0.905 26 H 0.349 0.651 27 H 0.014 0.986 28 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.084 -9.460 2.414 11.504 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.577 5.577 2 C -0.199 4.199 3 Si 0.787 3.213 4 H -0.193 1.193 5 H -0.209 1.209 6 H -0.191 1.191 7 C -0.571 4.571 8 H 0.079 0.921 9 C -0.005 4.005 10 C -0.091 4.091 11 H 0.070 0.930 12 C -0.154 4.154 13 C -0.149 4.149 14 C -0.072 4.072 15 N -0.328 5.328 16 C -0.047 4.047 17 H 0.071 0.929 18 H 0.007 0.993 19 H 0.007 0.993 20 H 0.074 0.926 21 H 0.067 0.933 22 H 0.083 0.917 23 H 0.104 0.896 24 H 0.045 0.955 25 H 0.114 0.886 26 H 0.167 0.833 27 H 0.032 0.968 28 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 6.055 -9.334 1.746 11.262 hybrid contribution -0.465 1.109 0.837 1.465 sum 5.591 -8.225 2.583 10.275 Atomic orbital electron populations 1.70095 1.07829 1.27726 1.52008 1.25978 0.95720 1.03305 0.94906 0.85534 0.78283 0.78248 0.79197 1.19278 1.20904 1.19101 1.21629 0.93422 0.92101 1.49975 0.92133 1.19008 0.93974 0.93063 0.94422 1.21084 0.96487 0.94452 0.97087 0.92995 1.21664 0.97913 0.94904 1.00930 1.21583 0.97439 0.97771 0.98082 1.22004 0.96960 0.91600 0.96661 1.60302 1.22532 1.02343 1.47624 1.21684 0.93627 0.93559 0.95865 0.92861 0.99312 0.99347 0.92636 0.93323 0.91738 0.89646 0.95537 0.88635 0.83294 0.96816 0.91866 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -58.07 13.29 21.45 0.28 -57.78 15 2 C 0.00 -0.10 5.46 84.65 0.46 0.36 15 3 Si 0.96 44.98 29.54 68.60 2.03 47.01 15 4 H -0.27 -12.06 7.11 99.48 0.71 -11.35 15 5 H -0.28 -12.95 7.11 99.48 0.71 -12.25 15 6 H -0.27 -11.88 7.11 99.48 0.71 -11.18 15 7 C -0.53 -30.85 8.42 25.60 0.22 -30.64 15 8 H 0.06 3.38 7.06 -2.91 -0.02 3.36 15 9 C 0.03 1.79 4.45 29.85 0.13 1.92 15 10 C -0.07 -3.13 2.30 -10.71 -0.02 -3.16 15 11 H 0.05 2.36 8.14 -2.38 -0.02 2.34 15 12 C -0.12 -4.19 5.30 30.70 0.16 -4.02 15 13 C -0.11 -3.09 6.09 30.65 0.19 -2.90 15 14 C 0.06 1.48 6.55 86.32 0.57 2.05 15 15 N -0.70 -21.54 6.85 -513.99 -3.52 -25.06 15 16 C 0.08 3.21 5.63 86.32 0.49 3.70 15 17 H 0.26 15.33 8.31 -92.71 -0.77 14.56 15 18 H -0.01 -0.68 8.14 -2.39 -0.02 -0.70 15 19 H -0.01 -0.70 8.14 -2.39 -0.02 -0.72 15 20 H 0.05 1.98 8.14 -2.39 -0.02 1.96 15 21 H 0.05 1.76 8.14 -2.39 -0.02 1.74 15 22 H 0.06 1.83 8.14 -2.39 -0.02 1.81 15 23 H 0.09 1.91 8.14 -2.39 -0.02 1.89 15 24 H 0.03 0.69 8.14 -2.39 -0.02 0.67 15 25 H 0.10 1.96 8.14 -2.39 -0.02 1.94 15 26 H 0.35 8.98 8.90 -89.69 -0.80 8.18 15 27 H 0.01 0.55 8.14 -2.38 -0.02 0.53 15 28 H 0.06 2.68 6.98 -2.39 -0.02 2.66 15 Total: -1.00 -64.38 227.85 1.30 -63.08 By element: Atomic # 1 Polarization: 5.13 SS G_CDS: 0.32 Total: 5.45 kcal Atomic # 6 Polarization: -34.88 SS G_CDS: 2.19 Total: -32.70 kcal Atomic # 7 Polarization: -79.61 SS G_CDS: -3.23 Total: -82.85 kcal Atomic # 14 Polarization: 44.98 SS G_CDS: 2.03 Total: 47.01 kcal Total: -64.38 1.30 -63.08 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000072231547.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.160 kcal (2) G-P(sol) polarization free energy of solvation -64.381 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.221 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.300 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.081 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.921 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.11 seconds