Wall clock time and date at job start Mon Mar 30 2020 02:03:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09000 * 109.46339 * 2 1 4 4 C 1.53034 * 109.45266 * 119.97428 * 2 1 3 5 5 C 1.53118 * 109.28068 * 60.83047 * 4 2 1 6 6 C 1.53121 * 109.15998 * 57.65604 * 5 4 2 7 7 C 1.53044 * 109.27467 * 302.34543 * 6 5 4 8 8 H 1.08999 * 109.45943 * 299.16193 * 7 6 5 9 9 C 1.50700 * 109.46137 * 179.19537 * 7 6 5 10 10 H 1.07999 * 120.00018 * 359.95026 * 9 7 6 11 11 C 1.37872 * 120.00108 * 179.97438 * 9 7 6 12 12 N 1.31516 * 120.00135 * 0.02562 * 11 9 7 13 13 Si 1.86809 * 120.00193 * 180.02562 * 11 9 7 14 14 H 1.48501 * 109.46864 * 0.02562 * 13 11 9 15 15 H 1.48498 * 109.46836 * 120.00160 * 13 11 9 16 16 H 1.48493 * 109.47107 * 240.00174 * 13 11 9 17 17 N 1.46847 * 109.52516 * 59.18169 * 7 6 5 18 18 H 1.09004 * 109.47484 * 179.97438 * 1 2 3 19 19 H 1.09002 * 109.47328 * 299.97605 * 1 2 3 20 20 H 1.09000 * 109.47553 * 59.98089 * 1 2 3 21 21 H 1.09001 * 109.49974 * 180.77425 * 4 2 1 22 22 H 1.08998 * 109.50670 * 300.88952 * 4 2 1 23 23 H 1.09004 * 109.52160 * 177.55277 * 5 4 2 24 24 H 1.08992 * 109.52406 * 297.74744 * 5 4 2 25 25 H 1.08996 * 109.50720 * 62.28327 * 6 5 4 26 26 H 1.08999 * 109.50475 * 182.36454 * 6 5 4 27 27 H 0.97002 * 120.00350 * 180.02562 * 12 11 9 28 28 H 1.00901 * 110.99839 * 174.16251 * 17 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0396 -0.7209 1.2500 5 6 1.5438 -2.1695 1.2357 6 6 2.0265 -2.8533 -0.0466 7 6 1.5171 -2.0705 -1.2590 8 1 0.4272 -2.0607 -1.2532 9 6 2.0064 -2.7287 -2.5233 10 1 2.6198 -3.6158 -2.4677 11 6 1.6713 -2.1981 -3.7509 12 7 0.9252 -1.1172 -3.8187 13 14 2.2772 -3.0145 -5.3182 14 1 3.0923 -4.2066 -4.9721 15 1 1.1133 -3.4328 -6.1402 16 1 3.1070 -2.0533 -6.0880 17 7 2.0193 -0.6918 -1.1994 18 1 -0.3634 -1.0277 -0.0005 19 1 -0.3634 0.5135 0.8902 20 1 -0.3634 0.5141 -0.8898 21 1 3.1296 -0.7094 1.2577 22 1 1.6635 -0.2164 2.1399 23 1 1.9404 -2.6989 2.1021 24 1 0.4544 -2.1820 1.2672 25 1 3.1161 -2.8753 -0.0593 26 1 1.6415 -3.8724 -0.0827 27 1 0.6891 -0.7441 -4.6824 28 1 1.7761 -0.1819 -2.0354 RHF calculation, no. of doubly occupied orbitals= 32 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000072231591.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:03:06 Heat of formation + Delta-G solvation = -18.998129 kcal Electronic energy + Delta-G solvation = -10292.873102 eV Core-core repulsion = 8535.775124 eV Total energy + Delta-G solvation = -1757.097978 eV No. of doubly occupied orbitals = 32 Molecular weight (most abundant/longest-lived isotopes) = 169.116 amu Computer time = 0.09 seconds Orbital eigenvalues (eV) -38.01288 -32.98563 -31.23681 -29.97953 -26.42843 -25.03158 -21.95613 -20.86974 -17.59517 -16.63474 -15.05361 -14.27483 -13.80633 -13.68805 -12.65806 -12.29885 -12.19503 -12.03884 -11.32012 -11.08728 -10.87580 -10.68427 -10.38143 -10.17420 -9.91208 -9.44887 -9.14448 -8.84387 -8.52358 -6.74192 -6.04050 -4.06419 3.31153 3.39142 3.43730 4.44715 5.20544 5.59486 5.66491 5.74645 6.01540 6.14972 6.22747 6.28337 6.48077 6.51208 6.62514 6.76450 6.81010 7.00184 7.07291 7.09231 7.20280 7.67187 7.94898 8.28996 8.77239 9.07990 9.24111 9.61116 11.05662 Molecular weight = 169.12amu Principal moments of inertia in cm(-1) A = 0.072513 B = 0.015931 C = 0.014132 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 386.043156 B = 1757.149192 C = 1980.887854 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C 0.078 3.922 3 H 0.057 0.943 4 C -0.105 4.105 5 C -0.120 4.120 6 C -0.106 4.106 7 C 0.211 3.789 8 H 0.002 0.998 9 C -0.503 4.503 10 H 0.059 0.941 11 C 0.064 3.936 12 N -0.902 5.902 13 Si 0.896 3.104 14 H -0.273 1.273 15 H -0.286 1.286 16 H -0.284 1.284 17 N -0.679 5.679 18 H 0.060 0.940 19 H 0.036 0.964 20 H 0.050 0.950 21 H 0.060 0.940 22 H 0.046 0.954 23 H 0.043 0.957 24 H 0.052 0.948 25 H 0.054 0.946 26 H 0.046 0.954 27 H 0.262 0.738 28 H 0.362 0.638 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.033 0.740 5.969 6.014 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.238 4.238 2 C -0.034 4.034 3 H 0.075 0.925 4 C -0.143 4.143 5 C -0.158 4.158 6 C -0.144 4.144 7 C 0.104 3.896 8 H 0.019 0.981 9 C -0.542 4.542 10 H 0.077 0.923 11 C -0.137 4.137 12 N -0.543 5.543 13 Si 0.725 3.275 14 H -0.198 1.198 15 H -0.212 1.212 16 H -0.210 1.210 17 N -0.315 5.315 18 H 0.079 0.921 19 H 0.056 0.944 20 H 0.070 0.930 21 H 0.079 0.921 22 H 0.064 0.936 23 H 0.062 0.938 24 H 0.071 0.929 25 H 0.073 0.927 26 H 0.065 0.935 27 H 0.072 0.928 28 H 0.186 0.814 Dipole moment (debyes) X Y Z Total from point charges 0.559 0.674 6.106 6.168 hybrid contribution -0.719 -0.153 -1.138 1.355 sum -0.160 0.521 4.968 4.998 Atomic orbital electron populations 1.22521 0.99224 1.01998 1.00108 1.21455 0.91693 0.96797 0.93412 0.92501 1.21517 1.00534 0.95727 0.96497 1.21633 0.99977 0.96000 0.98187 1.21635 1.00420 0.97920 0.94474 1.19028 0.93209 0.85641 0.91770 0.98089 1.21291 1.31667 1.10832 0.90366 0.92295 1.25010 0.94526 0.94976 0.99199 1.69690 1.37752 1.21810 1.25040 0.86468 0.78489 0.79425 0.83155 1.19810 1.21202 1.20994 1.60931 1.61839 1.04757 1.04020 0.92100 0.94449 0.93038 0.92130 0.93554 0.93794 0.92924 0.92723 0.93523 0.92825 0.81432 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.54 8.58 37.16 0.32 -3.22 15 2 C 0.08 1.60 3.68 -67.72 -0.25 1.35 15 3 H 0.06 1.11 8.14 -51.93 -0.42 0.68 15 4 C -0.10 -1.92 5.61 -26.65 -0.15 -2.07 15 5 C -0.12 -2.25 5.69 -26.61 -0.15 -2.40 15 6 C -0.11 -2.35 5.31 -26.65 -0.14 -2.49 15 7 C 0.21 5.42 2.10 -68.87 -0.14 5.28 15 8 H 0.00 0.05 6.19 -51.93 -0.32 -0.28 15 9 C -0.50 -14.10 8.76 -34.44 -0.30 -14.40 15 10 H 0.06 1.64 7.74 -52.49 -0.41 1.23 15 11 C 0.06 1.77 5.32 -17.82 -0.09 1.68 15 12 N -0.90 -25.61 11.48 55.43 0.64 -24.97 15 13 Si 0.90 21.51 29.54 -169.99 -5.02 16.49 15 14 H -0.27 -6.50 7.11 56.52 0.40 -6.09 15 15 H -0.29 -6.80 7.11 56.52 0.40 -6.40 15 16 H -0.28 -6.78 7.11 56.52 0.40 -6.38 15 17 N -0.68 -16.77 6.30 -100.99 -0.64 -17.41 15 18 H 0.06 1.28 4.80 -51.93 -0.25 1.03 15 19 H 0.04 0.62 8.14 -51.93 -0.42 0.20 15 20 H 0.05 1.07 8.14 -51.93 -0.42 0.64 15 21 H 0.06 1.12 8.14 -51.93 -0.42 0.69 15 22 H 0.05 0.73 8.14 -51.93 -0.42 0.31 15 23 H 0.04 0.72 8.14 -51.93 -0.42 0.30 15 24 H 0.05 0.97 6.56 -51.93 -0.34 0.63 15 25 H 0.05 1.23 8.14 -51.93 -0.42 0.80 15 26 H 0.05 0.99 8.14 -51.93 -0.42 0.57 15 27 H 0.26 7.08 8.31 -40.82 -0.34 6.74 15 28 H 0.36 9.68 6.65 -39.29 -0.26 9.42 15 LS Contribution 219.08 15.07 3.30 3.30 Total: -1.00 -28.03 219.08 -6.73 -34.76 By element: Atomic # 1 Polarization: 8.20 SS G_CDS: -4.10 Total: 4.10 kcal Atomic # 6 Polarization: -15.35 SS G_CDS: -0.91 Total: -16.27 kcal Atomic # 7 Polarization: -42.38 SS G_CDS: 0.00 Total: -42.38 kcal Atomic # 14 Polarization: 21.51 SS G_CDS: -5.02 Total: 16.49 kcal Total LS contribution 3.30 Total: 3.30 kcal Total: -28.03 -6.73 -34.76 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000072231591.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.762 kcal (2) G-P(sol) polarization free energy of solvation -28.032 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.269 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.729 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.761 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.998 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.09 seconds