Wall clock time and date at job start Mon Mar 30 2020 02:03:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09000 * 109.46339 * 2 1 4 4 C 1.53034 * 109.45266 * 119.97428 * 2 1 3 5 5 C 1.53118 * 109.28068 * 60.83047 * 4 2 1 6 6 C 1.53121 * 109.15998 * 57.65604 * 5 4 2 7 7 C 1.53044 * 109.27467 * 302.34543 * 6 5 4 8 8 H 1.08999 * 109.45943 * 299.16193 * 7 6 5 9 9 C 1.50700 * 109.46137 * 179.19537 * 7 6 5 10 10 H 1.07999 * 120.00018 * 359.95026 * 9 7 6 11 11 C 1.37872 * 120.00108 * 179.97438 * 9 7 6 12 12 N 1.31516 * 120.00135 * 0.02562 * 11 9 7 13 13 Si 1.86809 * 120.00193 * 180.02562 * 11 9 7 14 14 H 1.48501 * 109.46864 * 0.02562 * 13 11 9 15 15 H 1.48498 * 109.46836 * 120.00160 * 13 11 9 16 16 H 1.48493 * 109.47107 * 240.00174 * 13 11 9 17 17 N 1.46847 * 109.52516 * 59.18169 * 7 6 5 18 18 H 1.09004 * 109.47484 * 179.97438 * 1 2 3 19 19 H 1.09002 * 109.47328 * 299.97605 * 1 2 3 20 20 H 1.09000 * 109.47553 * 59.98089 * 1 2 3 21 21 H 1.09001 * 109.49974 * 180.77425 * 4 2 1 22 22 H 1.08998 * 109.50670 * 300.88952 * 4 2 1 23 23 H 1.09004 * 109.52160 * 177.55277 * 5 4 2 24 24 H 1.08992 * 109.52406 * 297.74744 * 5 4 2 25 25 H 1.08996 * 109.50720 * 62.28327 * 6 5 4 26 26 H 1.08999 * 109.50475 * 182.36454 * 6 5 4 27 27 H 0.97002 * 120.00350 * 180.02562 * 12 11 9 28 28 H 1.00901 * 110.99839 * 174.16251 * 17 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0396 -0.7209 1.2500 5 6 1.5438 -2.1695 1.2357 6 6 2.0265 -2.8533 -0.0466 7 6 1.5171 -2.0705 -1.2590 8 1 0.4272 -2.0607 -1.2532 9 6 2.0064 -2.7287 -2.5233 10 1 2.6198 -3.6158 -2.4677 11 6 1.6713 -2.1981 -3.7509 12 7 0.9252 -1.1172 -3.8187 13 14 2.2772 -3.0145 -5.3182 14 1 3.0923 -4.2066 -4.9721 15 1 1.1133 -3.4328 -6.1402 16 1 3.1070 -2.0533 -6.0880 17 7 2.0193 -0.6918 -1.1994 18 1 -0.3634 -1.0277 -0.0005 19 1 -0.3634 0.5135 0.8902 20 1 -0.3634 0.5141 -0.8898 21 1 3.1296 -0.7094 1.2577 22 1 1.6635 -0.2164 2.1399 23 1 1.9404 -2.6989 2.1021 24 1 0.4544 -2.1820 1.2672 25 1 3.1161 -2.8753 -0.0593 26 1 1.6415 -3.8724 -0.0827 27 1 0.6891 -0.7441 -4.6824 28 1 1.7761 -0.1819 -2.0354 RHF calculation, no. of doubly occupied orbitals= 32 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000072231591.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:03:05 Heat of formation + Delta-G solvation = -37.371323 kcal Electronic energy + Delta-G solvation = -10293.669824 eV Core-core repulsion = 8535.775124 eV Total energy + Delta-G solvation = -1757.894700 eV No. of doubly occupied orbitals = 32 Molecular weight (most abundant/longest-lived isotopes) = 169.116 amu Computer time = 0.11 seconds Orbital eigenvalues (eV) -39.73125 -34.99796 -32.91702 -31.85619 -28.16605 -26.95714 -23.63932 -22.69390 -19.26657 -18.65984 -17.02881 -16.13553 -15.50844 -15.37071 -14.28847 -14.16905 -14.03992 -13.65120 -13.04932 -12.91323 -12.63721 -12.47520 -12.26827 -11.88006 -11.57937 -11.22808 -10.88859 -10.73625 -10.57792 -8.66347 -8.14625 -6.25469 1.40507 1.42766 1.54281 2.43410 3.11033 3.97460 4.09373 4.20593 4.37502 4.53215 4.62376 4.74586 4.85657 4.97918 5.03646 5.13063 5.23417 5.27899 5.34973 5.46762 5.53629 5.68470 5.88629 6.26167 6.70140 7.08176 7.22385 7.46230 8.93299 Molecular weight = 169.12amu Principal moments of inertia in cm(-1) A = 0.072513 B = 0.015931 C = 0.014132 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 386.043156 B = 1757.149192 C = 1980.887854 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.068 3.932 3 H 0.069 0.931 4 C -0.100 4.100 5 C -0.115 4.115 6 C -0.104 4.104 7 C 0.211 3.789 8 H -0.029 1.029 9 C -0.531 4.531 10 H 0.052 0.948 11 C 0.018 3.982 12 N -0.923 5.923 13 Si 0.961 3.039 14 H -0.270 1.270 15 H -0.281 1.281 16 H -0.280 1.280 17 N -0.690 5.690 18 H 0.043 0.957 19 H 0.072 0.928 20 H 0.030 0.970 21 H 0.059 0.941 22 H 0.082 0.918 23 H 0.074 0.926 24 H 0.053 0.947 25 H 0.046 0.954 26 H 0.046 0.954 27 H 0.264 0.736 28 H 0.345 0.655 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.349 0.780 6.972 7.024 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C -0.043 4.043 3 H 0.087 0.913 4 C -0.138 4.138 5 C -0.153 4.153 6 C -0.142 4.142 7 C 0.103 3.897 8 H -0.012 1.012 9 C -0.570 4.570 10 H 0.070 0.930 11 C -0.181 4.181 12 N -0.564 5.564 13 Si 0.786 3.214 14 H -0.194 1.194 15 H -0.206 1.206 16 H -0.206 1.206 17 N -0.325 5.325 18 H 0.062 0.938 19 H 0.091 0.909 20 H 0.049 0.951 21 H 0.078 0.922 22 H 0.100 0.900 23 H 0.093 0.907 24 H 0.072 0.928 25 H 0.065 0.935 26 H 0.065 0.935 27 H 0.073 0.927 28 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges 0.877 0.710 7.134 7.222 hybrid contribution -0.834 -0.138 -1.436 1.666 sum 0.043 0.572 5.698 5.727 Atomic orbital electron populations 1.22389 0.98599 1.01053 1.00781 1.21688 0.92310 0.97449 0.92828 0.91287 1.21511 1.00504 0.95331 0.96405 1.21601 1.00124 0.96348 0.97212 1.21557 0.99786 0.97872 0.94977 1.18951 0.91395 0.86720 0.92646 1.01166 1.21642 1.32080 1.11177 0.92086 0.92989 1.25758 0.94610 0.95536 1.02160 1.69805 1.38253 1.22635 1.25736 0.85473 0.78038 0.78529 0.79319 1.19433 1.20642 1.20555 1.60897 1.62262 1.04479 1.04820 0.93805 0.90912 0.95125 0.92243 0.89971 0.90701 0.92806 0.93468 0.93488 0.92707 0.83373 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -6.47 8.58 71.98 0.62 -5.85 15 2 C 0.07 2.69 3.68 44.94 0.17 2.86 15 3 H 0.07 2.55 8.14 -2.39 -0.02 2.53 15 4 C -0.10 -3.33 5.61 30.65 0.17 -3.16 15 5 C -0.12 -4.01 5.69 30.67 0.17 -3.84 15 6 C -0.10 -4.51 5.31 30.65 0.16 -4.35 15 7 C 0.21 10.97 2.10 44.19 0.09 11.06 15 8 H -0.03 -1.66 6.19 -2.39 -0.01 -1.67 15 9 C -0.53 -30.27 8.76 25.60 0.22 -30.04 15 10 H 0.05 2.94 7.74 -2.91 -0.02 2.92 15 11 C 0.02 1.01 5.32 84.65 0.45 1.46 15 12 N -0.92 -53.20 11.48 21.45 0.25 -52.96 15 13 Si 0.96 44.40 29.54 68.60 2.03 46.43 15 14 H -0.27 -12.20 7.11 99.48 0.71 -11.50 15 15 H -0.28 -12.65 7.11 99.48 0.71 -11.95 15 16 H -0.28 -12.68 7.11 99.48 0.71 -11.97 15 17 N -0.69 -34.23 6.30 -473.41 -2.98 -37.21 15 18 H 0.04 1.81 4.80 -2.38 -0.01 1.80 15 19 H 0.07 2.23 8.14 -2.39 -0.02 2.21 15 20 H 0.03 1.26 8.14 -2.39 -0.02 1.24 15 21 H 0.06 2.01 8.14 -2.39 -0.02 1.99 15 22 H 0.08 2.20 8.14 -2.39 -0.02 2.18 15 23 H 0.07 2.17 8.14 -2.39 -0.02 2.15 15 24 H 0.05 1.87 6.56 -2.39 -0.02 1.85 15 25 H 0.05 2.09 8.14 -2.39 -0.02 2.07 15 26 H 0.05 1.98 8.14 -2.39 -0.02 1.96 15 27 H 0.26 14.40 8.31 -92.71 -0.77 13.63 15 28 H 0.34 18.83 6.65 -89.69 -0.60 18.23 15 Total: -1.00 -59.81 219.08 1.89 -57.93 By element: Atomic # 1 Polarization: 17.14 SS G_CDS: 0.53 Total: 17.67 kcal Atomic # 6 Polarization: -33.92 SS G_CDS: 2.06 Total: -31.86 kcal Atomic # 7 Polarization: -87.44 SS G_CDS: -2.73 Total: -90.17 kcal Atomic # 14 Polarization: 44.40 SS G_CDS: 2.03 Total: 46.43 kcal Total: -59.81 1.89 -57.93 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000072231591.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.554 kcal (2) G-P(sol) polarization free energy of solvation -59.812 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.258 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.887 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.925 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.371 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.11 seconds