Wall clock time and date at job start Mon Mar 30 2020 02:05:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09002 * 109.50181 * 2 1 4 4 C 1.53118 * 109.50524 * 239.88319 * 2 1 3 5 5 C 1.53121 * 109.15998 * 297.71523 * 4 2 1 6 6 C 1.53044 * 109.27467 * 302.34543 * 5 4 2 7 7 N 1.46847 * 109.52516 * 59.18169 * 6 5 4 8 8 C 1.46848 * 111.19556 * 298.25761 * 7 6 5 9 9 H 1.08999 * 109.45956 * 301.72471 * 8 7 6 10 10 C 1.50696 * 109.45958 * 181.75131 * 8 7 6 11 11 H 1.08007 * 119.99646 * 239.99666 * 10 8 7 12 12 C 1.37869 * 120.00534 * 59.99958 * 10 8 7 13 13 N 1.31521 * 119.99904 * 359.97438 * 12 10 8 14 14 Si 1.86806 * 120.00184 * 180.02562 * 12 10 8 15 15 H 1.48497 * 109.47211 * 59.99673 * 14 12 10 16 16 H 1.48505 * 109.47207 * 179.97438 * 14 12 10 17 17 H 1.48500 * 109.46698 * 299.99639 * 14 12 10 18 18 H 1.08998 * 109.47282 * 299.92374 * 1 2 3 19 19 H 1.09001 * 109.47132 * 59.92044 * 1 2 3 20 20 H 1.09000 * 109.47132 * 179.97438 * 1 2 3 21 21 H 1.09004 * 109.52160 * 57.61195 * 4 2 1 22 22 H 1.08992 * 109.52149 * 177.74610 * 4 2 1 23 23 H 1.08996 * 109.50720 * 62.28327 * 5 4 2 24 24 H 1.08999 * 109.50475 * 182.36454 * 5 4 2 25 25 H 1.08999 * 109.45943 * 299.16193 * 6 5 4 26 26 H 1.09003 * 109.46209 * 179.19733 * 6 5 4 27 27 H 1.00901 * 110.99839 * 174.16251 * 7 6 5 28 28 H 0.96993 * 120.00000 * 180.02562 * 13 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8939 1.0275 0.0000 4 6 2.0413 -0.7242 -1.2485 5 6 1.5750 -2.1822 -1.2100 6 6 2.0846 -2.8419 0.0734 7 7 1.5675 -2.1130 1.2387 8 6 2.0409 -0.7230 1.2483 9 1 3.1308 -0.7106 1.2547 10 6 1.5236 -0.0250 2.4797 11 1 0.8930 0.8464 2.3817 12 6 1.8553 -0.4986 3.7312 13 7 2.6228 -1.5600 3.8506 14 14 1.2135 0.3662 5.2576 15 1 -0.2714 0.3483 5.2491 16 1 1.7096 -0.3347 6.4692 17 1 1.6916 1.7721 5.2677 18 1 -0.3634 0.5126 0.8906 19 1 -0.3633 0.5151 -0.8893 20 1 -0.3633 -1.0277 -0.0005 21 1 1.6442 -0.2382 -2.1397 22 1 3.1304 -0.6895 -1.2692 23 1 0.4857 -2.2166 -1.2291 24 1 1.9710 -2.7139 -2.0752 25 1 3.1743 -2.8195 0.0852 26 1 1.7424 -3.8761 0.1108 27 1 1.8112 -2.5840 2.0971 28 1 2.8559 -1.8934 4.7311 RHF calculation, no. of doubly occupied orbitals= 32 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000072231594.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:05:14 Heat of formation + Delta-G solvation = -19.230378 kcal Electronic energy + Delta-G solvation = -10314.794695 eV Core-core repulsion = 8557.686646 eV Total energy + Delta-G solvation = -1757.108049 eV No. of doubly occupied orbitals = 32 Molecular weight (most abundant/longest-lived isotopes) = 169.116 amu Computer time = 0.10 seconds Orbital eigenvalues (eV) -37.90283 -32.88399 -31.57172 -29.98454 -26.04361 -24.87264 -21.92782 -21.05446 -17.55511 -16.48978 -15.17612 -14.43723 -13.71184 -13.13850 -12.94570 -12.37770 -12.30755 -12.09989 -11.04257 -10.96605 -10.78778 -10.67367 -10.29810 -10.09681 -9.93925 -9.61137 -8.97090 -8.76064 -8.52468 -6.76164 -6.04059 -4.06200 3.33796 3.38043 3.41212 4.44509 5.21250 5.61574 5.72536 5.74158 6.08784 6.26850 6.33238 6.36830 6.47277 6.61602 6.65735 6.78973 6.85533 6.95832 7.18559 7.20899 7.48044 7.56889 7.94385 8.28674 8.75466 9.06770 9.22050 9.61150 11.06094 Molecular weight = 169.12amu Principal moments of inertia in cm(-1) A = 0.069096 B = 0.016687 C = 0.014617 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 405.137997 B = 1677.580096 C = 1915.111637 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.082 4.082 3 H 0.052 0.948 4 C -0.115 4.115 5 C -0.112 4.112 6 C 0.055 3.945 7 N -0.682 5.682 8 C 0.220 3.780 9 H -0.008 1.008 10 C -0.499 4.499 11 H 0.061 0.939 12 C 0.063 3.937 13 N -0.904 5.904 14 Si 0.897 3.103 15 H -0.276 1.276 16 H -0.288 1.288 17 H -0.278 1.278 18 H 0.056 0.944 19 H 0.020 0.980 20 H 0.061 0.939 21 H 0.045 0.955 22 H 0.047 0.953 23 H 0.065 0.935 24 H 0.044 0.956 25 H 0.009 0.991 26 H 0.049 0.951 27 H 0.361 0.639 28 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.557 -0.055 -5.831 6.035 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C -0.101 4.101 3 H 0.070 0.930 4 C -0.152 4.152 5 C -0.150 4.150 6 C -0.075 4.075 7 N -0.319 5.319 8 C 0.112 3.888 9 H 0.010 0.990 10 C -0.538 4.538 11 H 0.079 0.921 12 C -0.137 4.137 13 N -0.545 5.545 14 Si 0.725 3.275 15 H -0.202 1.202 16 H -0.214 1.214 17 H -0.204 1.204 18 H 0.075 0.925 19 H 0.039 0.961 20 H 0.080 0.920 21 H 0.064 0.936 22 H 0.066 0.934 23 H 0.083 0.917 24 H 0.063 0.937 25 H 0.027 0.973 26 H 0.068 0.932 27 H 0.185 0.815 28 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -2.065 -0.019 -5.977 6.324 hybrid contribution 0.727 0.233 1.117 1.353 sum -1.339 0.213 -4.860 5.045 Atomic orbital electron populations 1.21625 0.95691 1.01759 0.98994 1.21173 0.96141 0.97893 0.94901 0.92953 1.21623 0.99496 0.96019 0.98086 1.21566 1.01130 0.95714 0.96622 1.21795 0.95779 0.96676 0.93300 1.60741 1.62131 1.04296 1.04712 1.18973 0.92559 0.85714 0.91519 0.99050 1.21197 1.30558 1.11874 0.90154 0.92091 1.25019 0.94536 0.95032 0.99156 1.69671 1.37075 1.23860 1.23906 0.86586 0.79336 0.79508 0.82099 1.20185 1.21405 1.20396 0.92533 0.96115 0.92013 0.93615 0.93380 0.91655 0.93696 0.97310 0.93235 0.81477 0.92699 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.54 8.49 37.16 0.32 -2.23 15 2 C -0.08 -1.79 2.71 -90.54 -0.25 -2.04 15 3 H 0.05 1.13 8.14 -51.93 -0.42 0.71 15 4 C -0.11 -2.16 5.51 -26.61 -0.15 -2.31 15 5 C -0.11 -2.06 5.74 -26.65 -0.15 -2.21 15 6 C 0.06 1.15 6.55 -3.83 -0.03 1.13 15 7 N -0.68 -16.80 5.77 -107.99 -0.62 -17.43 15 8 C 0.22 5.66 2.09 -68.88 -0.14 5.52 15 9 H -0.01 -0.23 8.14 -51.93 -0.42 -0.65 15 10 C -0.50 -13.78 8.03 -34.45 -0.28 -14.06 15 11 H 0.06 1.66 6.66 -52.48 -0.35 1.31 15 12 C 0.06 1.75 5.32 -17.82 -0.09 1.66 15 13 N -0.90 -25.75 11.48 55.43 0.64 -25.12 15 14 Si 0.90 21.43 29.54 -169.99 -5.02 16.40 15 15 H -0.28 -6.57 7.11 56.52 0.40 -6.17 15 16 H -0.29 -6.84 7.11 56.52 0.40 -6.44 15 17 H -0.28 -6.58 7.11 56.52 0.40 -6.18 15 18 H 0.06 1.23 6.57 -51.93 -0.34 0.89 15 19 H 0.02 0.36 8.14 -51.93 -0.42 -0.06 15 20 H 0.06 1.31 6.01 -51.93 -0.31 0.99 15 21 H 0.05 0.76 8.14 -51.93 -0.42 0.34 15 22 H 0.05 0.90 8.14 -51.93 -0.42 0.48 15 23 H 0.06 1.20 6.58 -51.93 -0.34 0.85 15 24 H 0.04 0.71 8.14 -51.93 -0.42 0.28 15 25 H 0.01 0.19 8.14 -51.93 -0.42 -0.23 15 26 H 0.05 0.95 8.14 -51.93 -0.42 0.52 15 27 H 0.36 9.68 6.65 -39.29 -0.26 9.42 15 28 H 0.26 7.17 8.31 -40.82 -0.34 6.83 15 LS Contribution 218.47 15.07 3.29 3.29 Total: -1.00 -27.87 218.47 -6.61 -34.47 By element: Atomic # 1 Polarization: 7.03 SS G_CDS: -4.12 Total: 2.91 kcal Atomic # 6 Polarization: -13.77 SS G_CDS: -0.77 Total: -14.54 kcal Atomic # 7 Polarization: -42.55 SS G_CDS: 0.01 Total: -42.54 kcal Atomic # 14 Polarization: 21.43 SS G_CDS: -5.02 Total: 16.40 kcal Total LS contribution 3.29 Total: 3.29 kcal Total: -27.87 -6.61 -34.47 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000072231594.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.243 kcal (2) G-P(sol) polarization free energy of solvation -27.865 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.622 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.608 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.473 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.230 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.10 seconds