Wall clock time and date at job start Mon Mar 30 2020 02:05:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09002 * 109.50181 * 2 1 4 4 C 1.53118 * 109.50524 * 239.88319 * 2 1 3 5 5 C 1.53121 * 109.15998 * 297.71523 * 4 2 1 6 6 C 1.53044 * 109.27467 * 302.34543 * 5 4 2 7 7 N 1.46847 * 109.52516 * 59.18169 * 6 5 4 8 8 C 1.46848 * 111.19556 * 298.25761 * 7 6 5 9 9 H 1.08999 * 109.45956 * 301.72471 * 8 7 6 10 10 C 1.50696 * 109.45958 * 181.75131 * 8 7 6 11 11 H 1.08007 * 119.99646 * 239.99666 * 10 8 7 12 12 C 1.37869 * 120.00534 * 59.99958 * 10 8 7 13 13 N 1.31521 * 119.99904 * 359.97438 * 12 10 8 14 14 Si 1.86806 * 120.00184 * 180.02562 * 12 10 8 15 15 H 1.48497 * 109.47211 * 59.99673 * 14 12 10 16 16 H 1.48505 * 109.47207 * 179.97438 * 14 12 10 17 17 H 1.48500 * 109.46698 * 299.99639 * 14 12 10 18 18 H 1.08998 * 109.47282 * 299.92374 * 1 2 3 19 19 H 1.09001 * 109.47132 * 59.92044 * 1 2 3 20 20 H 1.09000 * 109.47132 * 179.97438 * 1 2 3 21 21 H 1.09004 * 109.52160 * 57.61195 * 4 2 1 22 22 H 1.08992 * 109.52149 * 177.74610 * 4 2 1 23 23 H 1.08996 * 109.50720 * 62.28327 * 5 4 2 24 24 H 1.08999 * 109.50475 * 182.36454 * 5 4 2 25 25 H 1.08999 * 109.45943 * 299.16193 * 6 5 4 26 26 H 1.09003 * 109.46209 * 179.19733 * 6 5 4 27 27 H 1.00901 * 110.99839 * 174.16251 * 7 6 5 28 28 H 0.96993 * 120.00000 * 180.02562 * 13 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8939 1.0275 0.0000 4 6 2.0413 -0.7242 -1.2485 5 6 1.5750 -2.1822 -1.2100 6 6 2.0846 -2.8419 0.0734 7 7 1.5675 -2.1130 1.2387 8 6 2.0409 -0.7230 1.2483 9 1 3.1308 -0.7106 1.2547 10 6 1.5236 -0.0250 2.4797 11 1 0.8930 0.8464 2.3817 12 6 1.8553 -0.4986 3.7312 13 7 2.6228 -1.5600 3.8506 14 14 1.2135 0.3662 5.2576 15 1 -0.2714 0.3483 5.2491 16 1 1.7096 -0.3347 6.4692 17 1 1.6916 1.7721 5.2677 18 1 -0.3634 0.5126 0.8906 19 1 -0.3633 0.5151 -0.8893 20 1 -0.3633 -1.0277 -0.0005 21 1 1.6442 -0.2382 -2.1397 22 1 3.1304 -0.6895 -1.2692 23 1 0.4857 -2.2166 -1.2291 24 1 1.9710 -2.7139 -2.0752 25 1 3.1743 -2.8195 0.0852 26 1 1.7424 -3.8761 0.1108 27 1 1.8112 -2.5840 2.0971 28 1 2.8559 -1.8934 4.7311 RHF calculation, no. of doubly occupied orbitals= 32 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000072231594.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:05:14 Heat of formation + Delta-G solvation = -37.315276 kcal Electronic energy + Delta-G solvation = -10315.578915 eV Core-core repulsion = 8557.686646 eV Total energy + Delta-G solvation = -1757.892269 eV No. of doubly occupied orbitals = 32 Molecular weight (most abundant/longest-lived isotopes) = 169.116 amu Computer time = 0.10 seconds Orbital eigenvalues (eV) -39.65087 -34.89006 -33.31942 -31.81044 -27.88553 -26.70780 -23.74858 -22.77202 -19.29338 -18.50404 -17.11556 -16.26834 -15.38992 -14.96519 -14.79497 -14.03137 -14.01842 -13.96365 -12.81337 -12.80107 -12.47940 -12.44463 -12.19973 -11.83965 -11.59650 -11.31798 -10.75368 -10.68923 -10.55218 -8.72950 -8.14320 -6.24509 1.42664 1.44646 1.51978 2.43873 3.11575 3.97697 4.15024 4.19761 4.35717 4.60777 4.65075 4.78683 4.89136 5.04228 5.08971 5.17942 5.21806 5.35604 5.46458 5.48899 5.55378 5.78844 5.88839 6.26163 6.68993 7.03854 7.17301 7.46723 8.94261 Molecular weight = 169.12amu Principal moments of inertia in cm(-1) A = 0.069096 B = 0.016687 C = 0.014617 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 405.137997 B = 1677.580096 C = 1915.111637 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.085 4.085 3 H 0.048 0.952 4 C -0.111 4.111 5 C -0.106 4.106 6 C 0.049 3.951 7 N -0.686 5.686 8 C 0.219 3.781 9 H -0.053 1.053 10 C -0.520 4.520 11 H 0.059 0.941 12 C 0.015 3.985 13 N -0.929 5.929 14 Si 0.961 3.039 15 H -0.272 1.272 16 H -0.285 1.285 17 H -0.273 1.273 18 H 0.036 0.964 19 H 0.054 0.946 20 H 0.054 0.946 21 H 0.078 0.922 22 H 0.042 0.958 23 H 0.070 0.930 24 H 0.079 0.921 25 H -0.005 1.005 26 H 0.067 0.933 27 H 0.344 0.656 28 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.474 0.193 -6.865 7.300 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.104 4.104 3 H 0.066 0.934 4 C -0.149 4.149 5 C -0.144 4.144 6 C -0.081 4.081 7 N -0.321 5.321 8 C 0.111 3.889 9 H -0.036 1.036 10 C -0.558 4.558 11 H 0.077 0.923 12 C -0.183 4.183 13 N -0.571 5.571 14 Si 0.786 3.214 15 H -0.197 1.197 16 H -0.210 1.210 17 H -0.198 1.198 18 H 0.055 0.945 19 H 0.073 0.927 20 H 0.073 0.927 21 H 0.097 0.903 22 H 0.061 0.939 23 H 0.088 0.912 24 H 0.097 0.903 25 H 0.014 0.986 26 H 0.085 0.915 27 H 0.165 0.835 28 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -2.988 0.235 -7.036 7.648 hybrid contribution 1.048 0.132 1.419 1.769 sum -1.940 0.367 -5.617 5.954 Atomic orbital electron populations 1.21514 0.94432 1.01491 0.99670 1.21151 0.97157 0.97498 0.94560 0.93401 1.21603 0.99283 0.96379 0.97630 1.21553 1.01430 0.95315 0.96063 1.21984 0.95103 0.97694 0.93327 1.60746 1.62138 1.04008 1.05197 1.18931 0.89952 0.86884 0.93158 1.03554 1.21530 1.30656 1.12192 0.91435 0.92256 1.25798 0.94733 0.95727 1.02083 1.69798 1.37882 1.24931 1.24443 0.85576 0.78792 0.78537 0.78464 1.19676 1.21037 1.19787 0.94500 0.92736 0.92675 0.90349 0.93918 0.91152 0.90269 0.98632 0.91454 0.83451 0.92725 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -4.47 8.49 71.98 0.61 -3.86 15 2 C -0.08 -3.61 2.71 -10.74 -0.03 -3.64 15 3 H 0.05 2.04 8.14 -2.39 -0.02 2.02 15 4 C -0.11 -3.92 5.51 30.67 0.17 -3.75 15 5 C -0.11 -3.56 5.74 30.65 0.18 -3.38 15 6 C 0.05 2.00 6.55 86.33 0.57 2.57 15 7 N -0.69 -34.05 5.77 -495.56 -2.86 -36.91 15 8 C 0.22 11.45 2.09 44.19 0.09 11.54 15 9 H -0.05 -3.15 8.14 -2.39 -0.02 -3.17 15 10 C -0.52 -29.12 8.03 25.60 0.21 -28.91 15 11 H 0.06 3.26 6.66 -2.91 -0.02 3.24 15 12 C 0.01 0.83 5.32 84.65 0.45 1.28 15 13 N -0.93 -53.94 11.48 21.45 0.25 -53.70 15 14 Si 0.96 44.19 29.54 68.60 2.03 46.22 15 15 H -0.27 -12.21 7.11 99.48 0.71 -11.50 15 16 H -0.28 -12.85 7.11 99.48 0.71 -12.14 15 17 H -0.27 -12.20 7.11 99.48 0.71 -11.49 15 18 H 0.04 1.56 6.57 -2.39 -0.02 1.54 15 19 H 0.05 1.75 8.14 -2.39 -0.02 1.73 15 20 H 0.05 2.22 6.01 -2.39 -0.01 2.20 15 21 H 0.08 2.28 8.14 -2.39 -0.02 2.26 15 22 H 0.04 1.53 8.14 -2.39 -0.02 1.51 15 23 H 0.07 2.33 6.58 -2.39 -0.02 2.31 15 24 H 0.08 2.16 8.14 -2.39 -0.02 2.14 15 25 H 0.00 -0.20 8.14 -2.39 -0.02 -0.22 15 26 H 0.07 2.48 8.14 -2.39 -0.02 2.46 15 27 H 0.34 18.87 6.65 -89.69 -0.60 18.28 15 28 H 0.26 14.58 8.31 -92.71 -0.77 13.81 15 Total: -1.00 -59.76 218.47 2.19 -57.57 By element: Atomic # 1 Polarization: 14.44 SS G_CDS: 0.53 Total: 14.98 kcal Atomic # 6 Polarization: -30.40 SS G_CDS: 2.24 Total: -28.16 kcal Atomic # 7 Polarization: -87.99 SS G_CDS: -2.62 Total: -90.61 kcal Atomic # 14 Polarization: 44.19 SS G_CDS: 2.03 Total: 46.22 kcal Total: -59.76 2.19 -57.57 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000072231594.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.257 kcal (2) G-P(sol) polarization free energy of solvation -59.757 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.500 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.185 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.572 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.315 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.10 seconds