Wall clock time and date at job start Mon Mar 30 2020 01:46:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86791 * 119.99991 * 2 1 4 4 H 1.48497 * 109.47600 * 239.99791 * 3 2 1 5 5 H 1.48505 * 109.47080 * 0.02562 * 3 2 1 6 6 H 1.48501 * 109.47359 * 119.99368 * 3 2 1 7 7 C 1.37880 * 119.99811 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99685 * 180.02562 * 7 2 1 9 9 C 1.50696 * 120.00358 * 0.02562 * 7 2 1 10 10 H 1.08999 * 109.69567 * 300.55580 * 9 7 2 11 11 C 1.53976 * 109.69519 * 179.97438 * 9 7 2 12 12 C 1.45882 * 112.66788 * 158.84469 * 11 9 7 13 13 C 1.54525 * 111.60738 * 61.53272 * 12 11 9 14 14 C 1.50591 * 108.84265 * 282.66725 * 13 12 11 15 15 C 1.53923 * 112.87497 * 91.84133 * 14 13 12 16 16 N 1.44310 * 109.72815 * 61.12223 * 9 7 2 17 17 H 0.97001 * 120.00094 * 0.02562 * 1 2 3 18 18 H 1.08998 * 108.84401 * 38.02354 * 11 9 7 19 19 H 1.08993 * 108.84595 * 279.66271 * 11 9 7 20 20 H 1.09002 * 109.04228 * 182.05999 * 12 11 9 21 21 H 1.09003 * 109.04174 * 301.00743 * 12 11 9 22 22 H 1.08998 * 109.57219 * 42.55409 * 13 12 11 23 23 H 1.08998 * 109.57244 * 162.92156 * 13 12 11 24 24 H 1.08999 * 108.82320 * 330.96934 * 14 13 12 25 25 H 1.08998 * 108.73038 * 212.64980 * 14 13 12 26 26 H 1.09002 * 108.71187 * 196.75594 * 15 14 13 27 27 H 1.08996 * 108.61180 * 78.67195 * 15 14 13 28 28 H 1.00900 * 111.00158 * 341.08248 * 16 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1029 1.6964 -1.2124 5 1 1.2841 2.7464 0.0006 6 1 3.1028 1.6965 1.2126 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2511 -2.4992 0.0005 10 1 0.6152 -2.5563 0.8840 11 6 2.2471 -3.6734 0.0005 12 6 1.6534 -4.9142 0.4864 13 6 0.4778 -5.3704 -0.4067 14 6 -0.7319 -4.5339 -0.0832 15 6 -0.8508 -3.2842 -0.9739 16 7 0.4398 -2.5933 -1.1892 17 1 -0.4850 0.8400 -0.0004 18 1 3.0945 -3.4162 0.6360 19 1 2.6069 -3.8299 -1.0163 20 1 2.4157 -5.6933 0.4961 21 1 1.2894 -4.7604 1.5022 22 1 0.7439 -5.2395 -1.4556 23 1 0.2575 -6.4200 -0.2124 24 1 -0.6728 -4.2182 0.9584 25 1 -1.6251 -5.1447 -0.2143 26 1 -1.5473 -2.5874 -0.5076 27 1 -1.2525 -3.5839 -1.9418 28 1 0.2986 -1.6842 -1.6035 RHF calculation, no. of doubly occupied orbitals= 32 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000077862708.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:46:01 Heat of formation + Delta-G solvation = -37.554961 kcal Electronic energy + Delta-G solvation = -10264.646511 eV Core-core repulsion = 8506.743848 eV Total energy + Delta-G solvation = -1757.902663 eV No. of doubly occupied orbitals = 32 Molecular weight (most abundant/longest-lived isotopes) = 169.116 amu Computer time = 0.11 seconds Orbital eigenvalues (eV) -39.43691 -35.26705 -33.58530 -32.59996 -27.92677 -26.05923 -24.56790 -21.06048 -20.46008 -18.69251 -16.91550 -16.12568 -16.00696 -15.16774 -14.65193 -14.48845 -14.10725 -13.34396 -13.22345 -12.78077 -12.70712 -12.40959 -12.02711 -11.48889 -11.40774 -11.13237 -11.03846 -10.83310 -10.74632 -8.68526 -8.17540 -6.32795 1.41028 1.42319 1.50399 2.40151 3.06899 3.94342 3.98619 4.22695 4.33631 4.50160 4.68230 4.77031 4.95838 5.09259 5.12714 5.18474 5.25982 5.41163 5.45936 5.58309 5.61953 5.65154 5.89182 6.13341 6.73000 7.10303 7.19045 7.37356 8.86492 Molecular weight = 169.12amu Principal moments of inertia in cm(-1) A = 0.074574 B = 0.015692 C = 0.013724 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 375.377721 B = 1783.977237 C = 2039.710316 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.921 5.921 2 C 0.015 3.985 3 Si 0.963 3.037 4 H -0.269 1.269 5 H -0.284 1.284 6 H -0.273 1.273 7 C -0.545 4.545 8 H 0.055 0.945 9 C 0.223 3.777 10 H -0.032 1.032 11 C -0.101 4.101 12 C -0.109 4.109 13 C -0.100 4.100 14 C -0.111 4.111 15 C 0.066 3.934 16 N -0.685 5.685 17 H 0.264 0.736 18 H 0.037 0.963 19 H 0.049 0.951 20 H 0.070 0.930 21 H 0.041 0.959 22 H 0.062 0.938 23 H 0.079 0.921 24 H 0.034 0.966 25 H 0.080 0.920 26 H -0.005 1.005 27 H 0.062 0.938 28 H 0.337 0.663 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.247 -6.654 -0.710 6.696 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.561 5.561 2 C -0.184 4.184 3 Si 0.788 3.212 4 H -0.194 1.194 5 H -0.209 1.209 6 H -0.199 1.199 7 C -0.584 4.584 8 H 0.073 0.927 9 C 0.114 3.886 10 H -0.015 1.015 11 C -0.139 4.139 12 C -0.147 4.147 13 C -0.138 4.138 14 C -0.149 4.149 15 C -0.063 4.063 16 N -0.317 5.317 17 H 0.073 0.927 18 H 0.056 0.944 19 H 0.068 0.932 20 H 0.089 0.911 21 H 0.060 0.940 22 H 0.080 0.920 23 H 0.098 0.902 24 H 0.053 0.947 25 H 0.098 0.902 26 H 0.013 0.987 27 H 0.081 0.919 28 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges 0.396 -7.114 -0.889 7.180 hybrid contribution -0.279 1.928 0.632 2.048 sum 0.117 -5.187 -0.257 5.194 Atomic orbital electron populations 1.69998 1.07161 1.27763 1.51190 1.25832 0.95778 1.02680 0.94123 0.85541 0.78292 0.78524 0.78845 1.19417 1.20934 1.19856 1.21823 0.93523 0.92119 1.50906 0.92709 1.18575 0.90491 0.92144 0.87414 1.01451 1.20457 0.98130 0.95439 0.99902 1.20576 0.98433 0.97190 0.98467 1.21236 0.94008 0.98454 1.00076 1.21335 0.99606 0.95725 0.98230 1.22102 0.91292 0.94692 0.98260 1.59840 1.16180 1.25681 1.29992 0.92735 0.94383 0.93241 0.91140 0.94000 0.91964 0.90245 0.94688 0.90165 0.98694 0.91927 0.84427 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -53.18 12.11 21.45 0.26 -52.92 15 2 C 0.02 0.85 5.05 84.66 0.43 1.28 15 3 Si 0.96 43.85 29.54 68.60 2.03 45.88 15 4 H -0.27 -11.91 7.11 99.48 0.71 -11.20 15 5 H -0.28 -12.65 7.11 99.48 0.71 -11.95 15 6 H -0.27 -12.19 7.11 99.48 0.71 -11.48 15 7 C -0.55 -30.75 8.50 25.60 0.22 -30.53 15 8 H 0.05 3.04 7.69 -2.91 -0.02 3.02 15 9 C 0.22 11.62 1.99 44.98 0.09 11.71 15 10 H -0.03 -1.87 6.79 -2.39 -0.02 -1.89 15 11 C -0.10 -4.41 4.77 28.74 0.14 -4.28 15 12 C -0.11 -3.91 5.35 28.93 0.15 -3.75 15 13 C -0.10 -3.28 5.63 30.33 0.17 -3.11 15 14 C -0.11 -4.02 5.28 30.13 0.16 -3.86 15 15 C 0.07 2.84 6.44 86.41 0.56 3.40 15 16 N -0.68 -33.90 5.94 -495.14 -2.94 -36.84 15 17 H 0.26 14.53 8.31 -92.71 -0.77 13.76 15 18 H 0.04 1.65 7.88 -2.39 -0.02 1.64 15 19 H 0.05 2.16 8.08 -2.39 -0.02 2.14 15 20 H 0.07 2.12 8.14 -2.39 -0.02 2.10 15 21 H 0.04 1.54 7.59 -2.39 -0.02 1.52 15 22 H 0.06 2.15 7.78 -2.39 -0.02 2.13 15 23 H 0.08 2.07 8.14 -2.39 -0.02 2.05 15 24 H 0.03 1.38 6.66 -2.39 -0.02 1.37 15 25 H 0.08 2.37 8.14 -2.39 -0.02 2.35 15 26 H -0.01 -0.26 8.14 -2.39 -0.02 -0.28 15 27 H 0.06 2.40 8.14 -2.39 -0.02 2.38 15 28 H 0.34 18.40 6.78 -89.69 -0.61 17.79 15 Total: -1.00 -59.35 220.18 1.77 -57.58 By element: Atomic # 1 Polarization: 14.93 SS G_CDS: 0.52 Total: 15.44 kcal Atomic # 6 Polarization: -31.05 SS G_CDS: 1.91 Total: -29.14 kcal Atomic # 7 Polarization: -87.08 SS G_CDS: -2.68 Total: -89.77 kcal Atomic # 14 Polarization: 43.85 SS G_CDS: 2.03 Total: 45.88 kcal Total: -59.35 1.77 -57.58 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000077862708.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.025 kcal (2) G-P(sol) polarization free energy of solvation -59.352 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.327 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.772 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.580 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.555 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.11 seconds