Wall clock time and date at job start Mon Mar 30 2020 01:47:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86800 * 119.99931 * 2 1 4 4 H 1.48498 * 109.46691 * 180.02562 * 3 2 1 5 5 H 1.48500 * 109.46740 * 299.99561 * 3 2 1 6 6 H 1.48497 * 109.47025 * 59.99919 * 3 2 1 7 7 C 1.37876 * 119.99769 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99840 * 179.97438 * 7 2 1 9 9 C 1.50706 * 120.00344 * 359.97438 * 7 2 1 10 10 C 1.52999 * 109.46953 * 180.02562 * 9 7 2 11 11 C 1.53006 * 109.46623 * 179.97438 * 10 9 7 12 12 N 1.46902 * 109.46626 * 179.97438 * 11 10 9 13 13 C 1.47476 * 111.00115 * 74.03357 * 12 11 10 14 14 C 1.53510 * 87.93628 * 138.70040 * 13 12 11 15 15 C 1.47479 * 110.99664 * 170.00118 * 12 11 10 16 16 H 0.97000 * 120.00540 * 0.02562 * 1 2 3 17 17 H 1.09000 * 109.46974 * 59.99987 * 9 7 2 18 18 H 1.09001 * 109.46547 * 300.00078 * 9 7 2 19 19 H 1.09000 * 109.47486 * 60.00062 * 10 9 7 20 20 H 1.09001 * 109.47362 * 299.99339 * 10 9 7 21 21 H 1.08993 * 109.46955 * 300.00075 * 11 10 9 22 22 H 1.09000 * 109.47050 * 59.99904 * 11 10 9 23 23 H 1.08998 * 113.47495 * 253.46917 * 13 12 11 24 24 H 1.08998 * 113.47672 * 23.92839 * 13 12 11 25 25 H 1.09000 * 114.16725 * 220.33198 * 14 13 12 26 26 H 1.09000 * 114.34691 * 87.63298 * 14 13 12 27 27 H 1.09004 * 113.47955 * 336.06580 * 15 12 11 28 28 H 1.08997 * 113.47804 * 106.53006 * 15 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7091 1.3463 -0.0006 5 1 1.8904 2.3963 -1.2126 6 1 1.8903 2.3964 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2510 -2.4992 0.0017 10 6 2.2453 -3.6621 0.0027 11 6 1.4802 -4.9871 0.0046 12 7 2.4348 -6.1037 0.0050 13 6 3.0671 -6.2580 1.3283 14 6 2.9163 -7.7765 1.1617 15 6 1.7478 -7.3863 0.2457 16 1 -0.4851 0.8400 -0.0004 17 1 0.6240 -2.5576 -0.8880 18 1 0.6247 -2.5563 0.8920 19 1 2.8719 -3.6036 0.8927 20 1 2.8719 -3.6052 -0.8873 21 1 0.8539 -5.0438 0.8948 22 1 0.8532 -5.0459 -0.8851 23 1 4.1046 -5.9250 1.3553 24 1 2.4713 -5.8494 2.1445 25 1 2.6160 -8.2976 2.0708 26 1 3.7474 -8.2566 0.6449 27 1 0.7999 -7.2789 0.7730 28 1 1.6672 -8.0096 -0.6448 RHF calculation, no. of doubly occupied orbitals= 32 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000078738020.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:47:02 Heat of formation + Delta-G solvation = 16.798348 kcal Electronic energy + Delta-G solvation = -9519.797184 eV Core-core repulsion = 7764.251457 eV Total energy + Delta-G solvation = -1755.545727 eV No. of doubly occupied orbitals = 32 Molecular weight (most abundant/longest-lived isotopes) = 169.116 amu Computer time = 0.10 seconds Orbital eigenvalues (eV) -39.68284 -34.15134 -32.00856 -28.83212 -25.82857 -25.27414 -22.37133 -20.02817 -19.66955 -16.38949 -15.69463 -15.35292 -14.50081 -14.33028 -13.54871 -12.47877 -12.33749 -12.04839 -11.54481 -11.28692 -10.94246 -10.71063 -10.65918 -10.40829 -10.29841 -9.63941 -9.28490 -9.00137 -8.59709 -8.32323 -5.97307 -3.99254 3.33011 3.40146 3.45124 4.28769 4.49222 4.58886 5.00442 5.38458 5.43685 5.47892 5.65730 5.70166 5.82606 5.84265 5.94814 6.22481 6.31828 6.55282 6.75840 6.88107 7.19090 7.40933 7.71324 7.85955 8.03239 8.46901 9.08112 9.64682 11.14282 Molecular weight = 169.12amu Principal moments of inertia in cm(-1) A = 0.116189 B = 0.008532 C = 0.008176 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 240.929350 B = 3280.792017 C = 3423.962212 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.897 5.897 2 C 0.055 3.945 3 Si 0.892 3.108 4 H -0.273 1.273 5 H -0.284 1.284 6 H -0.284 1.284 7 C -0.517 4.517 8 H 0.055 0.945 9 C 0.021 3.979 10 C -0.103 4.103 11 C 0.020 3.980 12 N -0.475 5.475 13 C 0.000 4.000 14 C -0.149 4.149 15 C -0.006 4.006 16 H 0.259 0.741 17 H 0.016 0.984 18 H 0.013 0.987 19 H 0.045 0.955 20 H 0.054 0.946 21 H 0.036 0.964 22 H 0.071 0.929 23 H 0.081 0.919 24 H 0.068 0.932 25 H 0.070 0.930 26 H 0.089 0.911 27 H 0.065 0.935 28 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.510 -11.717 2.260 12.439 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.537 5.537 2 C -0.146 4.146 3 Si 0.720 3.280 4 H -0.197 1.197 5 H -0.210 1.210 6 H -0.210 1.210 7 C -0.556 4.556 8 H 0.074 0.926 9 C -0.017 4.017 10 C -0.141 4.141 11 C -0.108 4.108 12 N -0.198 5.198 13 C -0.130 4.130 14 C -0.187 4.187 15 C -0.135 4.135 16 H 0.069 0.931 17 H 0.034 0.966 18 H 0.032 0.968 19 H 0.064 0.936 20 H 0.073 0.927 21 H 0.054 0.946 22 H 0.089 0.911 23 H 0.099 0.901 24 H 0.086 0.914 25 H 0.088 0.912 26 H 0.107 0.893 27 H 0.083 0.917 28 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges 3.746 -11.460 1.638 12.167 hybrid contribution -0.255 1.014 0.691 1.254 sum 3.491 -10.445 2.329 11.257 Atomic orbital electron populations 1.69978 1.06071 1.26432 1.51198 1.25034 0.94849 0.99275 0.95396 0.86533 0.80159 0.83775 0.77541 1.19709 1.21009 1.21045 1.21300 0.93101 0.91041 1.50130 0.92626 1.19091 0.94038 0.91468 0.97080 1.21570 0.99082 0.92722 1.00734 1.22825 0.94723 0.92659 1.00594 1.68963 1.21412 1.01805 1.27575 1.23707 1.01549 0.95235 0.92465 1.23119 0.99178 0.96652 0.99728 1.23744 0.96566 0.93807 0.99417 0.93104 0.96578 0.96841 0.93601 0.92681 0.94602 0.91087 0.90061 0.91377 0.91158 0.89277 0.91672 0.90247 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.55 13.29 55.43 0.74 -26.82 15 2 C 0.06 1.62 5.46 -17.82 -0.10 1.53 15 3 Si 0.89 22.11 29.54 -169.99 -5.02 17.09 15 4 H -0.27 -6.61 7.11 56.52 0.40 -6.21 15 5 H -0.28 -6.95 7.11 56.52 0.40 -6.54 15 6 H -0.28 -6.94 7.11 56.52 0.40 -6.54 15 7 C -0.52 -15.16 9.11 -34.44 -0.31 -15.47 15 8 H 0.06 1.59 7.74 -52.49 -0.41 1.19 15 9 C 0.02 0.56 4.97 -27.88 -0.14 0.42 15 10 C -0.10 -2.28 5.26 -26.73 -0.14 -2.42 15 11 C 0.02 0.37 4.82 -3.82 -0.02 0.36 15 12 N -0.48 -7.80 6.41 -244.70 -1.57 -9.37 15 13 C 0.00 -0.01 7.00 -7.56 -0.05 -0.06 15 14 C -0.15 -1.70 8.47 -26.20 -0.22 -1.92 15 15 C -0.01 -0.08 7.70 -7.56 -0.06 -0.14 15 16 H 0.26 7.47 8.31 -40.82 -0.34 7.13 15 17 H 0.02 0.45 8.14 -51.93 -0.42 0.03 15 18 H 0.01 0.37 8.14 -51.93 -0.42 -0.05 15 19 H 0.05 1.00 7.67 -51.93 -0.40 0.60 15 20 H 0.05 1.24 8.14 -51.93 -0.42 0.82 15 21 H 0.04 0.65 7.56 -51.93 -0.39 0.26 15 22 H 0.07 1.33 8.14 -51.93 -0.42 0.91 15 23 H 0.08 1.13 8.14 -51.93 -0.42 0.71 15 24 H 0.07 0.97 7.70 -51.93 -0.40 0.57 15 25 H 0.07 0.67 8.14 -51.93 -0.42 0.25 15 26 H 0.09 0.95 8.14 -51.93 -0.42 0.52 15 27 H 0.07 0.82 7.77 -51.93 -0.40 0.41 15 28 H 0.08 0.96 8.14 -51.93 -0.42 0.53 15 LS Contribution 235.25 15.07 3.55 3.55 Total: -1.00 -30.79 235.25 -7.87 -38.66 By element: Atomic # 1 Polarization: -0.89 SS G_CDS: -4.52 Total: -5.40 kcal Atomic # 6 Polarization: -16.66 SS G_CDS: -1.04 Total: -17.70 kcal Atomic # 7 Polarization: -35.35 SS G_CDS: -0.83 Total: -36.19 kcal Atomic # 14 Polarization: 22.11 SS G_CDS: -5.02 Total: 17.09 kcal Total LS contribution 3.55 Total: 3.55 kcal Total: -30.79 -7.87 -38.66 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000078738020.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.457 kcal (2) G-P(sol) polarization free energy of solvation -30.790 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.667 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.868 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.659 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.798 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.10 seconds