Wall clock time and date at job start Mon Mar 30 2020 01:47:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86800 * 119.99931 * 2 1 4 4 H 1.48498 * 109.46691 * 180.02562 * 3 2 1 5 5 H 1.48500 * 109.46740 * 299.99561 * 3 2 1 6 6 H 1.48497 * 109.47025 * 59.99919 * 3 2 1 7 7 C 1.37876 * 119.99769 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99840 * 179.97438 * 7 2 1 9 9 C 1.50706 * 120.00344 * 359.97438 * 7 2 1 10 10 C 1.52999 * 109.46953 * 180.02562 * 9 7 2 11 11 C 1.53006 * 109.46623 * 179.97438 * 10 9 7 12 12 N 1.46902 * 109.46626 * 179.97438 * 11 10 9 13 13 C 1.47476 * 111.00115 * 74.03357 * 12 11 10 14 14 C 1.53510 * 87.93628 * 138.70040 * 13 12 11 15 15 C 1.47479 * 110.99664 * 170.00118 * 12 11 10 16 16 H 0.97000 * 120.00540 * 0.02562 * 1 2 3 17 17 H 1.09000 * 109.46974 * 59.99987 * 9 7 2 18 18 H 1.09001 * 109.46547 * 300.00078 * 9 7 2 19 19 H 1.09000 * 109.47486 * 60.00062 * 10 9 7 20 20 H 1.09001 * 109.47362 * 299.99339 * 10 9 7 21 21 H 1.08993 * 109.46955 * 300.00075 * 11 10 9 22 22 H 1.09000 * 109.47050 * 59.99904 * 11 10 9 23 23 H 1.08998 * 113.47495 * 253.46917 * 13 12 11 24 24 H 1.08998 * 113.47672 * 23.92839 * 13 12 11 25 25 H 1.09000 * 114.16725 * 220.33198 * 14 13 12 26 26 H 1.09000 * 114.34691 * 87.63298 * 14 13 12 27 27 H 1.09004 * 113.47955 * 336.06580 * 15 12 11 28 28 H 1.08997 * 113.47804 * 106.53006 * 15 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7091 1.3463 -0.0006 5 1 1.8904 2.3963 -1.2126 6 1 1.8903 2.3964 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2510 -2.4992 0.0017 10 6 2.2453 -3.6621 0.0027 11 6 1.4802 -4.9871 0.0046 12 7 2.4348 -6.1037 0.0050 13 6 3.0671 -6.2580 1.3283 14 6 2.9163 -7.7765 1.1617 15 6 1.7478 -7.3863 0.2457 16 1 -0.4851 0.8400 -0.0004 17 1 0.6240 -2.5576 -0.8880 18 1 0.6247 -2.5563 0.8920 19 1 2.8719 -3.6036 0.8927 20 1 2.8719 -3.6052 -0.8873 21 1 0.8539 -5.0438 0.8948 22 1 0.8532 -5.0459 -0.8851 23 1 4.1046 -5.9250 1.3553 24 1 2.4713 -5.8494 2.1445 25 1 2.6160 -8.2976 2.0708 26 1 3.7474 -8.2566 0.6449 27 1 0.7999 -7.2789 0.7730 28 1 1.6672 -8.0096 -0.6448 RHF calculation, no. of doubly occupied orbitals= 32 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000078738020.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:47:02 Heat of formation + Delta-G solvation = -4.607221 kcal Electronic energy + Delta-G solvation = -9520.725399 eV Core-core repulsion = 7764.251457 eV Total energy + Delta-G solvation = -1756.473942 eV No. of doubly occupied orbitals = 32 Molecular weight (most abundant/longest-lived isotopes) = 169.116 amu Computer time = 0.10 seconds Orbital eigenvalues (eV) -40.84810 -36.13075 -33.98990 -30.49988 -27.32895 -26.68396 -24.15378 -21.85935 -20.74579 -18.54468 -16.89853 -16.78386 -16.36649 -15.89337 -15.05370 -14.39324 -13.80551 -13.55150 -13.25907 -12.85924 -12.70302 -12.33062 -12.21781 -12.00079 -11.63835 -11.42205 -11.33206 -11.01941 -10.58588 -9.82956 -8.22646 -6.34252 1.38688 1.39336 1.53175 2.39507 3.10226 3.12837 3.57480 3.95236 4.08972 4.23464 4.43308 4.53556 4.65704 4.71541 4.81306 4.87410 4.97989 5.06892 5.16236 5.29198 5.42464 5.49066 5.69625 5.81554 6.10330 6.24544 6.82028 7.35226 8.89663 Molecular weight = 169.12amu Principal moments of inertia in cm(-1) A = 0.116189 B = 0.008532 C = 0.008176 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 240.929350 B = 3280.792017 C = 3423.962212 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.934 5.934 2 C -0.001 4.001 3 Si 0.968 3.032 4 H -0.263 1.263 5 H -0.276 1.276 6 H -0.276 1.276 7 C -0.545 4.545 8 H 0.058 0.942 9 C 0.025 3.975 10 C -0.088 4.088 11 C 0.031 3.969 12 N -0.496 5.496 13 C -0.011 4.011 14 C -0.127 4.127 15 C -0.009 4.009 16 H 0.265 0.735 17 H -0.008 1.008 18 H -0.008 1.008 19 H 0.047 0.953 20 H 0.047 0.953 21 H 0.037 0.963 22 H 0.065 0.935 23 H 0.080 0.920 24 H 0.065 0.935 25 H 0.094 0.906 26 H 0.100 0.900 27 H 0.070 0.930 28 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.543 -12.231 2.623 13.309 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.574 5.574 2 C -0.199 4.199 3 Si 0.792 3.208 4 H -0.187 1.187 5 H -0.202 1.202 6 H -0.201 1.201 7 C -0.583 4.583 8 H 0.076 0.924 9 C -0.013 4.013 10 C -0.126 4.126 11 C -0.097 4.097 12 N -0.219 5.219 13 C -0.140 4.140 14 C -0.165 4.165 15 C -0.137 4.137 16 H 0.073 0.927 17 H 0.010 0.990 18 H 0.010 0.990 19 H 0.066 0.934 20 H 0.066 0.934 21 H 0.055 0.945 22 H 0.083 0.917 23 H 0.098 0.902 24 H 0.083 0.917 25 H 0.113 0.887 26 H 0.118 0.882 27 H 0.088 0.912 28 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges 4.786 -11.995 2.003 13.069 hybrid contribution -0.598 1.137 0.578 1.409 sum 4.188 -10.858 2.581 11.920 Atomic orbital electron populations 1.70102 1.07828 1.27820 1.51656 1.26010 0.95820 1.03461 0.94560 0.85352 0.78991 0.78496 0.77932 1.18673 1.20197 1.20106 1.21706 0.93476 0.92411 1.50668 0.92414 1.18989 0.94373 0.93121 0.94782 1.21315 0.97962 0.92975 1.00368 1.22572 0.94670 0.92069 1.00390 1.68950 1.21510 1.02180 1.29240 1.23830 1.01174 0.97728 0.91237 1.23070 0.98494 0.94635 1.00284 1.23864 0.97361 0.91981 1.00542 0.92665 0.99001 0.98980 0.93413 0.93374 0.94506 0.91683 0.90173 0.91687 0.88706 0.88159 0.91172 0.89139 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -58.03 13.29 21.45 0.28 -57.75 15 2 C 0.00 -0.05 5.46 84.65 0.46 0.41 15 3 Si 0.97 45.23 29.54 68.60 2.03 47.26 15 4 H -0.26 -11.76 7.11 99.48 0.71 -11.05 15 5 H -0.28 -12.52 7.11 99.48 0.71 -11.81 15 6 H -0.28 -12.43 7.11 99.48 0.71 -11.72 15 7 C -0.54 -32.30 9.11 25.60 0.23 -32.07 15 8 H 0.06 3.31 7.74 -2.91 -0.02 3.29 15 9 C 0.02 1.38 4.97 29.85 0.15 1.53 15 10 C -0.09 -3.94 5.26 30.60 0.16 -3.78 15 11 C 0.03 1.17 4.82 86.31 0.42 1.59 15 12 N -0.50 -15.66 6.41 -928.09 -5.95 -21.61 15 13 C -0.01 -0.29 7.00 83.57 0.58 0.30 15 14 C -0.13 -2.50 8.47 30.94 0.26 -2.24 15 15 C -0.01 -0.21 7.70 83.57 0.64 0.43 15 16 H 0.26 15.30 8.31 -92.71 -0.77 14.53 15 17 H -0.01 -0.50 8.14 -2.39 -0.02 -0.52 15 18 H -0.01 -0.48 8.14 -2.39 -0.02 -0.50 15 19 H 0.05 2.08 7.67 -2.39 -0.02 2.06 15 20 H 0.05 2.19 8.14 -2.39 -0.02 2.17 15 21 H 0.04 1.34 7.56 -2.39 -0.02 1.33 15 22 H 0.06 2.46 8.14 -2.39 -0.02 2.44 15 23 H 0.08 2.12 8.14 -2.39 -0.02 2.10 15 24 H 0.06 1.77 7.70 -2.39 -0.02 1.75 15 25 H 0.09 1.45 8.14 -2.39 -0.02 1.43 15 26 H 0.10 1.78 8.14 -2.39 -0.02 1.76 15 27 H 0.07 1.61 7.77 -2.38 -0.02 1.59 15 28 H 0.09 1.95 8.14 -2.39 -0.02 1.93 15 Total: -1.00 -65.51 235.25 0.37 -65.14 By element: Atomic # 1 Polarization: -0.31 SS G_CDS: 1.10 Total: 0.79 kcal Atomic # 6 Polarization: -36.74 SS G_CDS: 2.91 Total: -33.83 kcal Atomic # 7 Polarization: -73.69 SS G_CDS: -5.67 Total: -79.36 kcal Atomic # 14 Polarization: 45.23 SS G_CDS: 2.03 Total: 47.26 kcal Total: -65.51 0.37 -65.14 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000078738020.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.532 kcal (2) G-P(sol) polarization free energy of solvation -65.508 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.976 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.368 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.139 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.607 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.10 seconds