Wall clock time and date at job start Mon Mar 30 2020 02:13:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46901 * 1 3 3 C 1.46900 * 111.00024 * 2 1 4 4 C 1.46900 * 111.00567 * 123.95966 * 2 1 3 5 5 C 1.52996 * 109.47510 * 164.02754 * 4 2 1 6 6 C 1.50696 * 115.55202 * 306.11908 * 5 4 2 7 7 H 1.07998 * 120.00236 * 145.31917 * 6 5 4 8 8 C 1.37875 * 119.99819 * 325.31871 * 6 5 4 9 9 N 1.31513 * 120.00043 * 352.16692 * 8 6 5 10 10 Si 1.86805 * 119.99862 * 172.16569 * 8 6 5 11 11 H 1.48500 * 109.46973 * 60.00147 * 10 8 6 12 12 H 1.48500 * 109.46999 * 179.97438 * 10 8 6 13 13 H 1.48499 * 109.47048 * 299.99983 * 10 8 6 14 14 C 1.52995 * 117.49707 * 160.44784 * 5 4 2 15 15 C 1.53004 * 117.49510 * 91.79033 * 5 4 2 16 16 H 1.08994 * 109.46564 * 296.04361 * 1 2 3 17 17 H 1.08994 * 109.47272 * 56.04559 * 1 2 3 18 18 H 1.09003 * 109.46902 * 176.04581 * 1 2 3 19 19 H 1.09002 * 109.46940 * 186.81984 * 3 2 1 20 20 H 1.09005 * 109.47025 * 306.81520 * 3 2 1 21 21 H 1.08998 * 109.47332 * 66.81657 * 3 2 1 22 22 H 1.09002 * 109.46897 * 44.02056 * 4 2 1 23 23 H 1.09001 * 109.46460 * 284.02851 * 4 2 1 24 24 H 0.97004 * 120.00179 * 185.03214 * 9 8 6 25 25 H 1.08999 * 117.50347 * 0.02562 * 14 5 4 26 26 H 1.09009 * 117.50172 * 145.02307 * 14 5 4 27 27 H 1.09005 * 117.49380 * 214.97964 * 15 5 4 28 28 H 1.08999 * 117.50526 * 359.97438 * 15 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 1.9956 -0.7661 1.1375 5 6 3.4730 -1.0836 0.8984 6 6 3.7875 -1.7703 -0.4056 7 1 4.7107 -1.5521 -0.9219 8 6 2.8968 -2.6772 -0.9395 9 7 1.8496 -3.0592 -0.2416 10 14 3.1774 -3.3633 -2.6542 11 1 4.4808 -4.0736 -2.6959 12 1 2.0862 -4.3121 -2.9923 13 1 3.1885 -2.2502 -3.6370 14 6 4.3214 -1.4565 2.1158 15 6 4.5053 -0.0941 1.4427 16 1 -0.3632 0.4512 0.9233 17 1 -0.3633 0.5739 -0.8524 18 1 -0.3633 -1.0253 -0.0709 19 1 3.0783 1.3449 -0.1220 20 1 1.5507 1.9313 -0.8228 21 1 1.7480 1.8556 0.9446 22 1 1.4359 -1.6958 1.2395 23 1 1.8932 -0.1784 2.0497 24 1 1.2630 -3.7507 -0.5862 25 1 3.8269 -1.4761 3.0870 26 1 5.1073 -2.1984 1.9734 27 1 5.4121 0.0599 0.8577 28 1 4.1319 0.7833 1.9708 RHF calculation, no. of doubly occupied orbitals= 32 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000083862259.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:13:08 Heat of formation + Delta-G solvation = 16.676595 kcal Electronic energy + Delta-G solvation = -10277.801001 eV Core-core repulsion = 8522.249995 eV Total energy + Delta-G solvation = -1755.551006 eV No. of doubly occupied orbitals = 32 Molecular weight (most abundant/longest-lived isotopes) = 169.116 amu Computer time = 0.13 seconds Orbital eigenvalues (eV) -39.16350 -36.36554 -33.99800 -28.27652 -28.21323 -27.18602 -22.90375 -22.82391 -20.72738 -18.03367 -16.62776 -15.86832 -15.74743 -15.64117 -14.90508 -14.33676 -13.32846 -13.15593 -12.96180 -12.78625 -12.54372 -12.37425 -12.29267 -12.18048 -11.82332 -11.12640 -10.87713 -10.46039 -9.88517 -8.73778 -7.86101 -5.96126 1.47265 1.50572 1.56045 2.53459 3.14228 3.50417 3.79823 4.36202 4.45942 4.56979 4.58885 4.70924 4.79076 4.85759 4.94811 4.99464 5.11407 5.17947 5.19845 5.44505 5.57104 5.68840 6.08718 6.47148 6.61935 6.73799 7.03252 7.65050 9.12420 Molecular weight = 169.12amu Principal moments of inertia in cm(-1) A = 0.038350 B = 0.023005 C = 0.017687 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 729.951544 B = 1216.809651 C = 1582.734551 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.040 3.960 2 N -0.536 5.536 3 C 0.034 3.966 4 C 0.115 3.885 5 C 0.036 3.964 6 C -0.493 4.493 7 H 0.039 0.961 8 C 0.050 3.950 9 N -0.893 5.893 10 Si 0.943 3.057 11 H -0.279 1.279 12 H -0.285 1.285 13 H -0.279 1.279 14 C -0.210 4.210 15 C -0.195 4.195 16 H 0.018 0.982 17 H 0.069 0.931 18 H 0.050 0.950 19 H 0.057 0.943 20 H 0.068 0.932 21 H 0.016 0.984 22 H 0.089 0.911 23 H -0.009 1.009 24 H 0.255 0.745 25 H 0.074 0.926 26 H 0.069 0.931 27 H 0.073 0.927 28 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.580 5.032 0.809 5.336 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.108 4.108 2 N -0.259 5.259 3 C -0.114 4.114 4 C -0.013 4.013 5 C 0.035 3.965 6 C -0.531 4.531 7 H 0.058 0.942 8 C -0.151 4.151 9 N -0.530 5.530 10 Si 0.771 3.229 11 H -0.205 1.205 12 H -0.211 1.211 13 H -0.204 1.204 14 C -0.248 4.248 15 C -0.233 4.233 16 H 0.036 0.964 17 H 0.088 0.912 18 H 0.069 0.931 19 H 0.076 0.924 20 H 0.087 0.913 21 H 0.035 0.965 22 H 0.107 0.893 23 H 0.008 0.992 24 H 0.065 0.935 25 H 0.093 0.907 26 H 0.088 0.912 27 H 0.091 0.909 28 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -1.638 4.726 0.326 5.012 hybrid contribution 0.007 -0.125 -0.010 0.126 sum -1.631 4.600 0.316 4.891 Atomic orbital electron populations 1.22220 0.88020 1.01142 0.99467 1.61541 1.06821 1.12677 1.44875 1.22335 1.00896 0.88945 0.99211 1.21517 0.95836 0.96871 0.87027 1.19086 0.89068 0.96195 0.92147 1.20451 1.03532 1.24026 1.05048 0.94250 1.25296 0.94221 0.96263 0.99278 1.69896 1.15602 1.29130 1.38417 0.85878 0.77197 0.77780 0.82086 1.20512 1.21100 1.20430 1.22979 1.05648 0.97999 0.98180 1.22902 1.02721 0.92249 1.05404 0.96358 0.91208 0.93086 0.92382 0.91313 0.96523 0.89315 0.99158 0.93491 0.90709 0.91220 0.90855 0.90004 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 1.52 9.54 127.69 1.22 2.73 15 2 N -0.54 -23.83 4.52 -948.85 -4.29 -28.12 15 3 C 0.03 1.30 9.25 127.69 1.18 2.48 15 4 C 0.12 5.52 4.00 86.30 0.35 5.86 15 5 C 0.04 1.79 1.59 -52.93 -0.08 1.71 15 6 C -0.49 -27.35 8.74 25.60 0.22 -27.13 15 7 H 0.04 2.22 7.83 -2.91 -0.02 2.19 15 8 C 0.05 2.76 5.17 84.65 0.44 3.19 15 9 N -0.89 -49.49 10.62 21.45 0.23 -49.26 15 10 Si 0.94 44.22 29.55 68.60 2.03 46.25 15 11 H -0.28 -12.87 7.11 99.48 0.71 -12.16 15 12 H -0.29 -13.08 7.11 99.48 0.71 -12.37 15 13 H -0.28 -13.05 7.11 99.48 0.71 -12.34 15 14 C -0.21 -9.60 9.96 30.62 0.30 -9.29 15 15 C -0.20 -8.47 8.56 30.62 0.26 -8.21 15 16 H 0.02 0.62 8.14 -2.39 -0.02 0.61 15 17 H 0.07 2.32 8.09 -2.39 -0.02 2.30 15 18 H 0.05 2.10 8.09 -2.39 -0.02 2.08 15 19 H 0.06 2.32 6.57 -2.39 -0.02 2.31 15 20 H 0.07 2.26 8.07 -2.38 -0.02 2.24 15 21 H 0.02 0.57 8.06 -2.39 -0.02 0.55 15 22 H 0.09 4.73 5.80 -2.39 -0.01 4.71 15 23 H -0.01 -0.43 7.93 -2.39 -0.02 -0.45 15 24 H 0.26 13.68 8.32 -92.71 -0.77 12.91 15 25 H 0.07 3.18 8.14 -2.39 -0.02 3.16 15 26 H 0.07 3.24 8.14 -2.38 -0.02 3.22 15 27 H 0.07 3.14 8.14 -2.38 -0.02 3.12 15 28 H 0.08 3.20 8.14 -2.39 -0.02 3.18 15 Total: -1.00 -57.48 232.26 2.96 -54.53 By element: Atomic # 1 Polarization: 4.15 SS G_CDS: 1.10 Total: 5.25 kcal Atomic # 6 Polarization: -32.54 SS G_CDS: 3.89 Total: -28.65 kcal Atomic # 7 Polarization: -73.32 SS G_CDS: -4.06 Total: -77.38 kcal Atomic # 14 Polarization: 44.22 SS G_CDS: 2.03 Total: 46.25 kcal Total: -57.48 2.96 -54.53 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000083862259.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.203 kcal (2) G-P(sol) polarization free energy of solvation -57.484 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.720 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.957 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.527 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.677 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.13 seconds