Wall clock time and date at job start Mon Mar 30 2020 01:46:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86799 * 120.00050 * 2 1 4 4 H 1.48498 * 109.47284 * 239.99927 * 3 2 1 5 5 H 1.48500 * 109.46953 * 359.97438 * 3 2 1 6 6 H 1.48494 * 109.47072 * 119.99591 * 3 2 1 7 7 C 1.37874 * 120.00026 * 179.97438 * 2 1 3 8 8 H 1.07994 * 120.00031 * 180.02562 * 7 2 1 9 9 C 1.50707 * 119.99874 * 0.02562 * 7 2 1 10 10 H 1.09000 * 108.75857 * 61.64522 * 9 7 2 11 11 C 1.50535 * 108.78873 * 179.97438 * 9 7 2 12 12 C 1.54515 * 108.85246 * 212.53910 * 11 9 7 13 13 C 1.45876 * 111.68108 * 282.73880 * 12 11 9 14 14 C 1.53985 * 112.65420 * 61.49612 * 13 12 11 15 15 N 1.44309 * 108.33075 * 278.62317 * 14 13 12 16 16 C 1.47945 * 113.65440 * 95.38597 * 15 14 13 17 17 H 0.97001 * 119.99599 * 0.02562 * 1 2 3 18 18 H 1.08998 * 109.57431 * 92.72796 * 11 9 7 19 19 H 1.08998 * 109.57543 * 332.34884 * 11 9 7 20 20 H 1.08999 * 109.04043 * 162.17420 * 12 11 9 21 21 H 1.08999 * 109.04187 * 43.30274 * 12 11 9 22 22 H 1.09004 * 108.85062 * 182.31737 * 13 12 11 23 23 H 1.08999 * 108.84534 * 300.68029 * 13 12 11 24 24 H 1.09003 * 109.69603 * 38.33166 * 14 13 12 25 25 H 1.08998 * 109.69222 * 158.91882 * 14 13 12 26 26 H 1.00906 * 110.99387 * 329.42858 * 15 14 13 27 27 H 1.08996 * 108.71505 * 197.14533 * 16 15 14 28 28 H 1.09003 * 108.71041 * 79.13065 * 16 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1030 1.6964 -1.2125 5 1 1.2842 2.7464 -0.0006 6 1 3.1028 1.6964 1.2125 7 6 2.0046 -1.1940 0.0005 8 1 3.0845 -1.1940 0.0010 9 6 1.2510 -2.4992 0.0005 10 1 0.6516 -2.5578 -0.9080 11 6 2.2428 -3.6316 0.0005 12 6 1.6443 -4.8194 -0.7860 13 6 0.6530 -5.5430 0.0024 14 6 -0.5483 -4.6639 0.3963 15 7 -0.1789 -3.8818 1.5514 16 6 0.3102 -2.5258 1.2184 17 1 -0.4849 0.8401 -0.0004 18 1 2.4466 -3.9386 1.0264 19 1 3.1677 -3.3070 -0.4761 20 1 2.4468 -5.5033 -1.0624 21 1 1.1714 -4.4431 -1.6931 22 1 0.2925 -6.3920 -0.5785 23 1 1.1286 -5.9162 0.9094 24 1 -0.8045 -4.0004 -0.4298 25 1 -1.4024 -5.2962 0.6387 26 1 0.4883 -4.3763 2.1245 27 1 0.8429 -2.1247 2.0806 28 1 -0.5475 -1.8856 1.0117 RHF calculation, no. of doubly occupied orbitals= 32 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000084233149.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:46:56 Heat of formation + Delta-G solvation = -35.531601 kcal Electronic energy + Delta-G solvation = -10245.390742 eV Core-core repulsion = 8487.575818 eV Total energy + Delta-G solvation = -1757.814924 eV No. of doubly occupied orbitals = 32 Molecular weight (most abundant/longest-lived isotopes) = 169.116 amu Computer time = 0.11 seconds Orbital eigenvalues (eV) -39.81910 -35.35848 -33.85873 -32.40825 -27.63434 -25.76098 -24.95318 -21.69095 -20.53075 -18.44553 -16.82206 -16.32136 -15.87744 -15.79564 -14.73756 -14.25534 -13.89010 -13.35438 -13.26922 -12.88880 -12.81438 -12.34859 -12.12541 -11.66961 -11.51598 -11.23656 -11.01951 -10.91593 -10.43727 -8.99481 -8.11236 -6.23164 1.40349 1.41470 1.49467 2.41760 3.14788 3.69932 3.91287 4.07309 4.34525 4.57209 4.63239 4.75723 4.82457 5.04429 5.09969 5.16941 5.32920 5.35041 5.44401 5.49261 5.62808 5.91557 6.05670 6.27062 6.48876 6.85050 6.93494 7.43664 8.93539 Molecular weight = 169.12amu Principal moments of inertia in cm(-1) A = 0.077066 B = 0.014992 C = 0.013519 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 363.237818 B = 1867.270118 C = 2070.633751 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.916 5.916 2 C 0.011 3.989 3 Si 0.955 3.045 4 H -0.272 1.272 5 H -0.284 1.284 6 H -0.270 1.270 7 C -0.541 4.541 8 H 0.052 0.948 9 C 0.021 3.979 10 H -0.011 1.011 11 C -0.102 4.102 12 C -0.115 4.115 13 C -0.139 4.139 14 C 0.068 3.932 15 N -0.705 5.705 16 C 0.089 3.911 17 H 0.261 0.739 18 H 0.051 0.949 19 H 0.045 0.955 20 H 0.072 0.928 21 H 0.041 0.959 22 H 0.080 0.920 23 H 0.069 0.931 24 H 0.039 0.961 25 H 0.080 0.920 26 H 0.337 0.663 27 H 0.028 0.972 28 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.932 -7.840 0.560 8.094 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.555 5.555 2 C -0.188 4.188 3 Si 0.781 3.219 4 H -0.198 1.198 5 H -0.209 1.209 6 H -0.195 1.195 7 C -0.579 4.579 8 H 0.070 0.930 9 C 0.000 4.000 10 H 0.007 0.993 11 C -0.139 4.139 12 C -0.152 4.152 13 C -0.178 4.178 14 C -0.062 4.062 15 N -0.335 5.335 16 C -0.040 4.040 17 H 0.070 0.930 18 H 0.069 0.931 19 H 0.064 0.936 20 H 0.090 0.910 21 H 0.060 0.940 22 H 0.098 0.902 23 H 0.088 0.912 24 H 0.057 0.943 25 H 0.098 0.902 26 H 0.155 0.845 27 H 0.047 0.953 28 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 1.132 -7.500 0.649 7.612 hybrid contribution 1.141 1.065 -0.493 1.637 sum 2.273 -6.435 0.156 6.826 Atomic orbital electron populations 1.70042 1.07161 1.27219 1.51092 1.25808 0.95722 1.02561 0.94674 0.85656 0.78406 0.79068 0.78811 1.19776 1.20914 1.19527 1.21692 0.92906 0.92266 1.51076 0.92990 1.18956 0.93402 0.93349 0.94248 0.99265 1.21413 0.98262 0.95245 0.99003 1.20590 0.98914 0.97164 0.98565 1.21103 0.96549 0.99032 1.01073 1.21711 0.97316 0.95072 0.92145 1.59767 1.47829 1.04580 1.21281 1.22177 0.97941 0.87726 0.96135 0.93017 0.93069 0.93634 0.90971 0.94048 0.90181 0.91205 0.94260 0.90165 0.84502 0.95303 0.92467 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -54.03 11.26 21.45 0.24 -53.79 15 2 C 0.01 0.64 5.28 84.65 0.45 1.09 15 3 Si 0.96 44.23 29.54 68.60 2.03 46.25 15 4 H -0.27 -12.29 7.11 99.48 0.71 -11.58 15 5 H -0.28 -12.89 7.11 99.48 0.71 -12.18 15 6 H -0.27 -12.12 7.11 99.48 0.71 -11.41 15 7 C -0.54 -30.39 8.32 25.60 0.21 -30.18 15 8 H 0.05 2.86 7.45 -2.91 -0.02 2.84 15 9 C 0.02 1.04 1.64 -12.03 -0.02 1.02 15 10 H -0.01 -0.61 6.66 -2.39 -0.02 -0.63 15 11 C -0.10 -4.21 5.11 30.31 0.15 -4.05 15 12 C -0.11 -3.89 5.34 28.93 0.15 -3.73 15 13 C -0.14 -4.09 5.29 28.74 0.15 -3.93 15 14 C 0.07 2.38 6.27 87.12 0.55 2.93 15 15 N -0.70 -28.05 6.55 -513.88 -3.36 -31.41 15 16 C 0.09 4.41 5.20 86.41 0.45 4.86 15 17 H 0.26 14.69 8.31 -92.71 -0.77 13.92 15 18 H 0.05 1.99 7.44 -2.39 -0.02 1.97 15 19 H 0.04 1.92 7.52 -2.39 -0.02 1.91 15 20 H 0.07 2.06 8.14 -2.39 -0.02 2.04 15 21 H 0.04 1.52 7.59 -2.39 -0.02 1.50 15 22 H 0.08 1.94 8.14 -2.38 -0.02 1.92 15 23 H 0.07 1.87 7.51 -2.39 -0.02 1.85 15 24 H 0.04 1.62 6.79 -2.39 -0.02 1.61 15 25 H 0.08 2.45 8.14 -2.39 -0.02 2.43 15 26 H 0.34 11.86 7.57 -89.69 -0.68 11.19 15 27 H 0.03 1.48 7.96 -2.39 -0.02 1.46 15 28 H 0.06 3.26 6.40 -2.39 -0.02 3.24 15 Total: -1.00 -60.31 216.74 1.45 -58.85 By element: Atomic # 1 Polarization: 11.63 SS G_CDS: 0.45 Total: 12.08 kcal Atomic # 6 Polarization: -34.09 SS G_CDS: 2.10 Total: -31.99 kcal Atomic # 7 Polarization: -82.08 SS G_CDS: -3.12 Total: -85.20 kcal Atomic # 14 Polarization: 44.23 SS G_CDS: 2.03 Total: 46.25 kcal Total: -60.31 1.45 -58.85 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000084233149.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.322 kcal (2) G-P(sol) polarization free energy of solvation -60.308 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.986 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.454 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.853 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.532 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.11 seconds