Wall clock time and date at job start Mon Mar 30 2020 01:46:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86798 * 120.00321 * 2 1 4 4 H 1.48498 * 109.47416 * 240.00244 * 3 2 1 5 5 H 1.48508 * 109.46609 * 0.02562 * 3 2 1 6 6 H 1.48503 * 109.46903 * 119.99829 * 3 2 1 7 7 C 1.37885 * 119.99913 * 180.02562 * 2 1 3 8 8 H 1.07991 * 119.99806 * 179.97438 * 7 2 1 9 9 C 1.50697 * 119.99686 * 359.72095 * 7 2 1 10 10 H 1.09000 * 109.03511 * 301.04289 * 9 7 2 11 11 C 1.54526 * 109.03756 * 182.16173 * 9 7 2 12 12 C 1.50544 * 108.86551 * 162.21153 * 11 9 7 13 13 C 1.53921 * 112.93624 * 91.75184 * 12 11 9 14 14 N 1.47936 * 113.33555 * 317.74714 * 13 12 11 15 15 C 1.44304 * 113.64378 * 318.14701 * 14 13 12 16 16 C 1.45881 * 109.04323 * 60.00641 * 9 7 2 17 17 H 0.97000 * 119.99651 * 359.97438 * 1 2 3 18 18 H 1.09004 * 109.57099 * 282.02162 * 11 9 7 19 19 H 1.08994 * 109.57514 * 42.39481 * 11 9 7 20 20 H 1.09000 * 108.78975 * 330.85758 * 12 11 9 21 21 H 1.09003 * 108.69636 * 212.57585 * 12 11 9 22 22 H 1.09006 * 108.70702 * 196.75376 * 13 12 11 23 23 H 1.09002 * 108.61465 * 78.67668 * 13 12 11 24 24 H 1.00903 * 111.00078 * 192.19442 * 14 13 12 25 25 H 1.09003 * 109.69488 * 335.69095 * 15 14 13 26 26 H 1.08997 * 109.72944 * 215.12275 * 15 14 13 27 27 H 1.09004 * 108.83970 * 302.87460 * 16 9 7 28 28 H 1.08994 * 108.84365 * 61.33029 * 16 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1030 1.6964 -1.2125 5 1 1.2842 2.7464 0.0006 6 1 3.1030 1.6963 1.2126 7 6 2.0046 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2510 -2.4991 0.0052 10 1 0.6168 -2.5395 0.8908 11 6 2.2633 -3.6655 0.0584 12 6 1.5456 -4.9132 0.4995 13 6 1.0083 -5.7445 -0.6792 14 7 0.3892 -4.9225 -1.7420 15 6 -0.4378 -3.8526 -1.2384 16 6 0.4110 -2.5690 -1.1854 17 1 -0.4850 0.8401 0.0004 18 1 2.6926 -3.8218 -0.9313 19 1 3.0554 -3.4294 0.7688 20 1 0.7098 -4.6299 1.1392 21 1 2.2363 -5.5280 1.0767 22 1 0.2643 -6.4461 -0.3017 23 1 1.8339 -6.3103 -1.1109 24 1 -0.1222 -5.4990 -2.3933 25 1 -0.7909 -4.1012 -0.2376 26 1 -1.2896 -3.7026 -1.9016 27 1 -0.2548 -1.7060 -1.1976 28 1 1.0486 -2.5335 -2.0687 RHF calculation, no. of doubly occupied orbitals= 32 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000084233162.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:46:43 Heat of formation + Delta-G solvation = -31.882601 kcal Electronic energy + Delta-G solvation = -10191.813774 eV Core-core repulsion = 8434.157083 eV Total energy + Delta-G solvation = -1757.656691 eV No. of doubly occupied orbitals = 32 Molecular weight (most abundant/longest-lived isotopes) = 169.116 amu Computer time = 0.10 seconds Orbital eigenvalues (eV) -39.54202 -35.64288 -33.47201 -32.45557 -27.95544 -26.02047 -24.65372 -20.89990 -20.60133 -18.53769 -17.40135 -16.52467 -15.83514 -15.20740 -14.71281 -14.46020 -13.85984 -13.53348 -12.97041 -12.84131 -12.64835 -12.27316 -12.07720 -11.82644 -11.47811 -11.19702 -10.77655 -10.64568 -10.32706 -9.06297 -8.03826 -6.20108 1.40986 1.42914 1.50477 2.44729 3.19289 3.47322 4.05688 4.25080 4.43784 4.47439 4.56307 4.84820 4.90744 4.96457 5.06934 5.15693 5.31500 5.43743 5.58997 5.63159 5.84610 6.08325 6.30188 6.42977 6.52839 6.78771 6.96098 7.47683 8.97606 Molecular weight = 169.12amu Principal moments of inertia in cm(-1) A = 0.081211 B = 0.014349 C = 0.013053 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 344.699868 B = 1950.832189 C = 2144.555085 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.918 5.918 2 C 0.008 3.992 3 Si 0.954 3.046 4 H -0.272 1.272 5 H -0.282 1.282 6 H -0.272 1.272 7 C -0.536 4.536 8 H 0.047 0.953 9 C 0.047 3.953 10 H -0.016 1.016 11 C -0.095 4.095 12 C -0.117 4.117 13 C 0.072 3.928 14 N -0.705 5.705 15 C 0.077 3.923 16 C -0.095 4.095 17 H 0.260 0.740 18 H 0.050 0.950 19 H 0.038 0.962 20 H 0.038 0.962 21 H 0.078 0.922 22 H 0.039 0.961 23 H 0.080 0.920 24 H 0.350 0.650 25 H 0.023 0.977 26 H 0.062 0.938 27 H 0.061 0.939 28 H 0.024 0.976 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.462 -8.372 -1.526 8.522 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.558 5.558 2 C -0.190 4.190 3 Si 0.779 3.221 4 H -0.197 1.197 5 H -0.207 1.207 6 H -0.197 1.197 7 C -0.574 4.574 8 H 0.066 0.934 9 C 0.029 3.971 10 H 0.002 0.998 11 C -0.133 4.133 12 C -0.155 4.155 13 C -0.056 4.056 14 N -0.338 5.338 15 C -0.052 4.052 16 C -0.134 4.134 17 H 0.069 0.931 18 H 0.069 0.931 19 H 0.056 0.944 20 H 0.057 0.943 21 H 0.097 0.903 22 H 0.057 0.943 23 H 0.099 0.901 24 H 0.169 0.831 25 H 0.041 0.959 26 H 0.081 0.919 27 H 0.079 0.921 28 H 0.043 0.957 Dipole moment (debyes) X Y Z Total from point charges 0.840 -7.859 -1.552 8.055 hybrid contribution -0.461 0.687 0.417 0.926 sum 0.379 -7.173 -1.135 7.272 Atomic orbital electron populations 1.69973 1.07092 1.27008 1.51760 1.25766 0.95766 1.02399 0.95026 0.85679 0.78456 0.79169 0.78755 1.19743 1.20747 1.19744 1.21715 0.92962 0.92641 1.50120 0.93433 1.17703 0.93219 0.92467 0.93748 0.99809 1.21228 0.97723 0.94698 0.99607 1.21402 0.99634 0.96900 0.97522 1.22181 0.98477 0.93697 0.91270 1.58989 1.39987 1.15055 1.19787 1.21526 0.94170 0.92167 0.97372 1.20427 0.98643 0.96492 0.97824 0.93085 0.93093 0.94361 0.94302 0.90299 0.94312 0.90129 0.83110 0.95883 0.91939 0.92088 0.95719 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -54.63 11.21 21.45 0.24 -54.39 15 2 C 0.01 0.47 5.28 84.66 0.45 0.92 15 3 Si 0.95 45.04 29.54 68.60 2.03 47.07 15 4 H -0.27 -12.53 7.11 99.48 0.71 -11.82 15 5 H -0.28 -12.95 7.11 99.48 0.71 -12.24 15 6 H -0.27 -12.49 7.11 99.48 0.71 -11.79 15 7 C -0.54 -31.12 8.43 25.60 0.22 -30.90 15 8 H 0.05 2.72 7.73 -2.92 -0.02 2.70 15 9 C 0.05 2.48 1.70 -13.20 -0.02 2.46 15 10 H -0.02 -0.94 7.59 -2.39 -0.02 -0.96 15 11 C -0.09 -4.15 4.92 30.32 0.15 -4.01 15 12 C -0.12 -4.11 5.28 30.11 0.16 -3.95 15 13 C 0.07 2.15 6.44 86.41 0.56 2.71 15 14 N -0.70 -23.52 6.17 -513.91 -3.17 -26.69 15 15 C 0.08 3.06 6.15 87.12 0.54 3.60 15 16 C -0.10 -4.77 4.46 28.74 0.13 -4.65 15 17 H 0.26 14.70 8.31 -92.71 -0.77 13.92 15 18 H 0.05 2.25 7.78 -2.38 -0.02 2.23 15 19 H 0.04 1.67 8.01 -2.39 -0.02 1.65 15 20 H 0.04 1.48 6.66 -2.39 -0.02 1.46 15 21 H 0.08 2.32 8.14 -2.39 -0.02 2.30 15 22 H 0.04 1.00 8.14 -2.38 -0.02 0.98 15 23 H 0.08 2.12 8.14 -2.39 -0.02 2.10 15 24 H 0.35 9.32 8.89 -89.69 -0.80 8.52 15 25 H 0.02 0.93 6.79 -2.39 -0.02 0.92 15 26 H 0.06 2.24 8.14 -2.39 -0.02 2.22 15 27 H 0.06 3.46 5.71 -2.38 -0.01 3.45 15 28 H 0.02 1.27 8.08 -2.39 -0.02 1.25 15 Total: -1.00 -62.56 219.01 1.60 -60.96 By element: Atomic # 1 Polarization: 6.55 SS G_CDS: 0.33 Total: 6.88 kcal Atomic # 6 Polarization: -35.99 SS G_CDS: 2.17 Total: -33.83 kcal Atomic # 7 Polarization: -78.16 SS G_CDS: -2.93 Total: -81.09 kcal Atomic # 14 Polarization: 45.04 SS G_CDS: 2.03 Total: 47.07 kcal Total: -62.56 1.60 -60.96 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000084233162.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.081 kcal (2) G-P(sol) polarization free energy of solvation -62.559 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.478 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.595 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.964 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.883 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.10 seconds