Wall clock time and date at job start Mon Mar 30 2020 01:45:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86802 * 119.99929 * 2 1 4 4 H 1.48494 * 109.47123 * 89.99837 * 3 2 1 5 5 H 1.48505 * 109.46682 * 209.99938 * 3 2 1 6 6 H 1.48499 * 109.47036 * 329.99802 * 3 2 1 7 7 C 1.37879 * 120.00070 * 179.97438 * 2 1 3 8 8 H 1.07994 * 120.00059 * 186.44998 * 7 2 1 9 9 C 1.50699 * 119.99791 * 6.44445 * 7 2 1 10 10 H 1.09002 * 109.47316 * 34.61488 * 9 7 2 11 11 N 1.46903 * 109.46981 * 154.60767 * 9 7 2 12 12 C 1.53000 * 109.47596 * 274.61118 * 9 7 2 13 13 C 1.54270 * 110.02925 * 297.16894 * 12 9 7 14 14 C 1.54892 * 104.19570 * 217.10237 * 13 12 9 15 15 C 1.54890 * 102.74470 * 37.94277 * 14 13 12 16 16 C 1.53871 * 110.03661 * 180.02562 * 12 9 7 17 17 H 0.97008 * 120.00424 * 175.07545 * 1 2 3 18 18 H 1.00895 * 111.00241 * 293.16940 * 11 9 7 19 19 H 1.00903 * 110.99874 * 57.12313 * 11 9 7 20 20 H 1.09000 * 110.01591 * 58.60886 * 12 9 7 21 21 H 1.08997 * 110.48449 * 335.78405 * 13 12 9 22 22 H 1.09000 * 110.48679 * 98.42754 * 13 12 9 23 23 H 1.09001 * 110.75581 * 279.63076 * 14 13 12 24 24 H 1.08991 * 110.75893 * 156.25462 * 14 13 12 25 25 H 1.09007 * 110.48344 * 203.37786 * 15 14 13 26 26 H 1.08996 * 110.60032 * 80.79156 * 15 14 13 27 27 H 1.08995 * 110.03301 * 238.57235 * 16 12 9 28 28 H 1.09004 * 110.03049 * 359.94870 * 16 12 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4965 2.0465 1.4000 5 1 3.5467 1.4401 -0.7001 6 1 1.4465 2.6527 -0.7001 7 6 2.0045 -1.1941 0.0005 8 1 3.0793 -1.1970 0.1056 9 6 1.2581 -2.4951 -0.1454 10 1 0.4048 -2.3521 -0.8083 11 7 2.1535 -3.5123 -0.7125 12 6 0.7656 -2.9574 1.2274 13 6 1.9674 -3.2321 2.1549 14 6 1.5339 -4.4677 2.9824 15 6 0.7649 -5.3217 1.9439 16 6 0.0016 -4.2862 1.0934 17 1 -0.4851 -0.8370 -0.0721 18 1 2.4039 -3.2843 -1.6629 19 1 2.9761 -3.6296 -0.1400 20 1 0.1196 -2.1976 1.6673 21 1 2.8577 -3.4589 1.5685 22 1 2.1473 -2.3790 2.8091 23 1 0.8782 -4.1731 3.8018 24 1 2.4041 -5.0064 3.3571 25 1 0.0673 -5.9936 2.4441 26 1 1.4594 -5.8876 1.3230 27 1 -1.0153 -4.1718 1.4688 28 1 -0.0191 -4.6014 0.0501 RHF calculation, no. of doubly occupied orbitals= 32 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000084327450.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:45:05 Heat of formation + Delta-G solvation = -28.709014 kcal Electronic energy + Delta-G solvation = -10189.122704 eV Core-core repulsion = 8431.603630 eV Total energy + Delta-G solvation = -1757.519074 eV No. of doubly occupied orbitals = 32 Molecular weight (most abundant/longest-lived isotopes) = 169.116 amu Computer time = 0.10 seconds Orbital eigenvalues (eV) -37.86238 -33.93187 -31.41174 -27.95746 -27.65811 -24.82677 -21.84345 -19.94805 -18.27192 -16.83210 -15.37092 -14.50771 -14.26802 -13.77186 -12.74827 -12.69051 -12.37293 -11.68793 -10.89637 -10.81490 -10.41373 -10.32959 -10.17902 -10.13447 -9.94164 -9.62582 -9.41056 -8.98175 -8.31898 -7.34225 -6.32719 -4.09565 3.40673 3.43780 3.59252 4.51261 5.33378 5.42548 5.47230 5.54370 5.96980 6.19688 6.25730 6.34676 6.39101 6.47245 6.58703 6.73318 6.84240 6.94351 7.10102 7.27084 7.40784 7.52262 8.02930 8.25369 8.61012 8.66526 8.84209 9.65058 11.01086 Molecular weight = 169.12amu Principal moments of inertia in cm(-1) A = 0.068167 B = 0.014742 C = 0.014476 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 410.655871 B = 1898.831815 C = 1933.733235 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.910 5.910 2 C 0.023 3.977 3 Si 1.066 2.934 4 H -0.289 1.289 5 H -0.291 1.291 6 H -0.284 1.284 7 C -0.625 4.625 8 H 0.045 0.955 9 C 0.202 3.798 10 H 0.035 0.965 11 N -0.847 5.847 12 C -0.074 4.074 13 C -0.097 4.097 14 C -0.128 4.128 15 C -0.115 4.115 16 C -0.116 4.116 17 H 0.271 0.729 18 H 0.323 0.677 19 H 0.321 0.679 20 H 0.059 0.941 21 H 0.059 0.941 22 H 0.051 0.949 23 H 0.055 0.945 24 H 0.052 0.948 25 H 0.046 0.954 26 H 0.061 0.939 27 H 0.039 0.961 28 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.658 -5.877 2.787 7.027 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.546 5.546 2 C -0.182 4.182 3 Si 0.895 3.105 4 H -0.216 1.216 5 H -0.217 1.217 6 H -0.210 1.210 7 C -0.664 4.664 8 H 0.064 0.936 9 C 0.092 3.908 10 H 0.053 0.947 11 N -0.374 5.374 12 C -0.094 4.094 13 C -0.135 4.135 14 C -0.166 4.166 15 C -0.153 4.153 16 C -0.153 4.153 17 H 0.083 0.917 18 H 0.132 0.868 19 H 0.133 0.867 20 H 0.078 0.922 21 H 0.078 0.922 22 H 0.070 0.930 23 H 0.074 0.926 24 H 0.070 0.930 25 H 0.065 0.935 26 H 0.080 0.920 27 H 0.058 0.942 28 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 1.827 -4.740 2.960 5.879 hybrid contribution 0.904 -0.731 -0.054 1.163 sum 2.731 -5.471 2.906 6.770 Atomic orbital electron populations 1.70761 1.06804 1.31255 1.45755 1.25747 0.96512 1.02509 0.93441 0.83596 0.74728 0.75500 0.76720 1.21561 1.21681 1.21015 1.22677 0.94790 0.93283 1.55666 0.93620 1.19149 0.92651 0.87970 0.91016 0.94719 1.59344 1.21195 1.51133 1.05695 1.21837 0.95169 0.94441 0.97923 1.22134 0.98822 0.95555 0.96964 1.22545 0.98850 0.97484 0.97696 1.22246 0.98518 0.97384 0.97143 1.22164 0.97243 0.96011 0.99923 0.91708 0.86760 0.86731 0.92206 0.92217 0.92967 0.92622 0.92969 0.93513 0.92030 0.94212 0.91521 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -27.18 13.63 55.43 0.76 -26.42 15 2 C 0.02 0.66 5.45 -17.82 -0.10 0.56 15 3 Si 1.07 25.18 29.91 -169.99 -5.08 20.09 15 4 H -0.29 -6.64 7.11 56.52 0.40 -6.24 15 5 H -0.29 -6.58 7.11 56.52 0.40 -6.18 15 6 H -0.28 -6.72 7.11 56.52 0.40 -6.32 15 7 C -0.62 -17.05 7.98 -34.44 -0.27 -17.33 15 8 H 0.05 1.26 7.82 -52.49 -0.41 0.85 15 9 C 0.20 5.00 1.99 -68.86 -0.14 4.86 15 10 H 0.03 0.96 6.96 -51.93 -0.36 0.60 15 11 N -0.85 -18.08 8.50 -5.65 -0.05 -18.13 15 12 C -0.07 -1.68 2.70 -89.50 -0.24 -1.92 15 13 C -0.10 -1.98 5.66 -25.07 -0.14 -2.12 15 14 C -0.13 -2.19 6.91 -24.74 -0.17 -2.36 15 15 C -0.12 -1.96 6.83 -25.10 -0.17 -2.13 15 16 C -0.12 -2.29 6.19 -25.64 -0.16 -2.45 15 17 H 0.27 8.09 6.36 -40.82 -0.26 7.83 15 18 H 0.32 6.67 9.08 -39.29 -0.36 6.31 15 19 H 0.32 6.59 6.80 -39.29 -0.27 6.33 15 20 H 0.06 1.53 7.80 -51.93 -0.40 1.12 15 21 H 0.06 1.22 5.80 -51.93 -0.30 0.92 15 22 H 0.05 1.11 8.14 -51.93 -0.42 0.69 15 23 H 0.05 0.92 8.14 -51.93 -0.42 0.49 15 24 H 0.05 0.79 8.14 -51.93 -0.42 0.37 15 25 H 0.05 0.71 8.14 -51.93 -0.42 0.28 15 26 H 0.06 1.03 8.14 -51.93 -0.42 0.61 15 27 H 0.04 0.75 8.14 -51.93 -0.42 0.33 15 28 H 0.07 1.37 7.38 -51.93 -0.38 0.98 15 LS Contribution 223.90 15.07 3.37 3.37 Total: -1.00 -28.53 223.90 -6.47 -35.01 By element: Atomic # 1 Polarization: 13.05 SS G_CDS: -4.08 Total: 8.97 kcal Atomic # 6 Polarization: -21.50 SS G_CDS: -1.39 Total: -22.89 kcal Atomic # 7 Polarization: -45.26 SS G_CDS: 0.71 Total: -44.55 kcal Atomic # 14 Polarization: 25.18 SS G_CDS: -5.08 Total: 20.09 kcal Total LS contribution 3.37 Total: 3.37 kcal Total: -28.53 -6.47 -35.01 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000084327450.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.298 kcal (2) G-P(sol) polarization free energy of solvation -28.535 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.236 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.473 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.008 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.709 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.10 seconds