Wall clock time and date at job start Mon Mar 30 2020 01:45:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86800 * 119.99771 * 2 1 4 4 H 1.48503 * 109.46845 * 90.00345 * 3 2 1 5 5 H 1.48503 * 109.47399 * 209.99834 * 3 2 1 6 6 H 1.48498 * 109.47295 * 330.00441 * 3 2 1 7 7 C 1.37880 * 120.00210 * 180.02562 * 2 1 3 8 8 H 1.07995 * 119.99685 * 180.02562 * 7 2 1 9 9 C 1.50696 * 119.99983 * 359.97438 * 7 2 1 10 10 H 1.09010 * 109.46864 * 60.00292 * 9 7 2 11 11 N 1.46898 * 109.47310 * 300.00486 * 9 7 2 12 12 C 1.52998 * 109.47188 * 180.02562 * 9 7 2 13 13 C 1.54263 * 110.03143 * 297.16920 * 12 9 7 14 14 C 1.54889 * 104.19403 * 217.10135 * 13 12 9 15 15 C 1.54887 * 102.74917 * 37.94675 * 14 13 12 16 16 C 1.53872 * 110.03145 * 180.02562 * 12 9 7 17 17 H 0.97000 * 119.99462 * 179.97438 * 1 2 3 18 18 H 1.00899 * 111.00188 * 176.04029 * 11 9 7 19 19 H 1.00896 * 111.00080 * 300.00219 * 11 9 7 20 20 H 1.08995 * 110.01331 * 58.61131 * 12 9 7 21 21 H 1.08993 * 110.48954 * 335.78090 * 13 12 9 22 22 H 1.09000 * 110.48398 * 98.42858 * 13 12 9 23 23 H 1.08996 * 110.76139 * 279.63166 * 14 13 12 24 24 H 1.09005 * 110.91105 * 156.33115 * 14 13 12 25 25 H 1.08997 * 110.49277 * 203.37868 * 15 14 13 26 26 H 1.09005 * 110.59982 * 80.79009 * 15 14 13 27 27 H 1.09004 * 110.02968 * 238.57304 * 16 12 9 28 28 H 1.09005 * 110.03655 * 359.97438 * 16 12 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0464 1.4001 5 1 3.5467 1.4403 -0.7000 6 1 1.4465 2.6527 -0.6999 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1939 -0.0001 9 6 1.2512 -2.4991 -0.0005 10 1 0.6242 -2.5567 -0.8904 11 7 0.4070 -2.5772 1.1991 12 6 2.2454 -3.6620 -0.0005 13 6 3.0918 -3.6336 -1.2899 14 6 3.2765 -5.1272 -1.6560 15 6 1.9025 -5.7413 -1.2900 16 6 1.4892 -5.0021 -0.0012 17 1 -0.4849 -0.8401 -0.0004 18 1 -0.1570 -3.4138 1.1906 19 1 0.9652 -2.5259 2.0380 20 1 2.8933 -3.5989 0.8737 21 1 2.5601 -3.1092 -2.0838 22 1 4.0577 -3.1647 -1.1019 23 1 4.0711 -5.5757 -1.0599 24 1 3.4809 -5.2446 -2.7203 25 1 2.0002 -6.8105 -1.1021 26 1 1.1774 -5.5591 -2.0833 27 1 1.7704 -5.5899 0.8726 28 1 0.4138 -4.8240 -0.0010 RHF calculation, no. of doubly occupied orbitals= 32 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000084327452.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:45:06 Heat of formation + Delta-G solvation = -48.285935 kcal Electronic energy + Delta-G solvation = -10083.543076 eV Core-core repulsion = 8325.175083 eV Total energy + Delta-G solvation = -1758.367993 eV No. of doubly occupied orbitals = 32 Molecular weight (most abundant/longest-lived isotopes) = 169.116 amu Computer time = 0.11 seconds Orbital eigenvalues (eV) -39.58235 -35.93815 -33.16246 -29.96802 -29.08301 -26.87917 -23.47343 -21.45167 -20.43891 -18.94004 -16.74592 -16.24187 -16.04863 -15.51942 -15.04719 -14.22738 -13.88603 -13.69172 -12.69608 -12.42912 -12.11317 -12.04702 -11.93855 -11.90314 -11.79956 -11.49789 -11.23967 -10.51556 -10.39582 -9.15508 -8.32460 -6.18431 1.54553 1.63565 1.80116 2.65069 3.35534 3.77187 3.82164 3.91086 4.28018 4.52534 4.56025 4.69120 4.79119 4.85450 4.85852 4.96581 5.08670 5.21639 5.39007 5.41802 5.46250 5.61982 6.03819 6.30883 6.76702 6.83413 7.13802 7.73833 9.01953 Molecular weight = 169.12amu Principal moments of inertia in cm(-1) A = 0.067722 B = 0.014528 C = 0.012770 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 413.353426 B = 1926.895864 C = 2192.123094 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.926 5.926 2 C -0.020 4.020 3 Si 1.111 2.889 4 H -0.279 1.279 5 H -0.276 1.276 6 H -0.287 1.287 7 C -0.616 4.616 8 H 0.038 0.962 9 C 0.214 3.786 10 H -0.008 1.008 11 N -0.844 5.844 12 C -0.109 4.109 13 C -0.104 4.104 14 C -0.118 4.118 15 C -0.117 4.117 16 C -0.121 4.121 17 H 0.276 0.724 18 H 0.316 0.684 19 H 0.326 0.674 20 H 0.046 0.954 21 H 0.042 0.958 22 H 0.049 0.951 23 H 0.074 0.926 24 H 0.074 0.926 25 H 0.084 0.916 26 H 0.057 0.943 27 H 0.067 0.933 28 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.374 -9.381 -1.216 10.879 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.562 5.562 2 C -0.222 4.222 3 Si 0.934 3.066 4 H -0.205 1.205 5 H -0.201 1.201 6 H -0.213 1.213 7 C -0.655 4.655 8 H 0.056 0.944 9 C 0.105 3.895 10 H 0.010 0.990 11 N -0.373 5.373 12 C -0.130 4.130 13 C -0.142 4.142 14 C -0.155 4.155 15 C -0.155 4.155 16 C -0.158 4.158 17 H 0.087 0.913 18 H 0.128 0.872 19 H 0.138 0.862 20 H 0.064 0.936 21 H 0.061 0.939 22 H 0.068 0.932 23 H 0.093 0.907 24 H 0.093 0.907 25 H 0.102 0.898 26 H 0.076 0.924 27 H 0.086 0.914 28 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 4.814 -7.082 -1.484 8.690 hybrid contribution 0.481 -2.271 0.312 2.342 sum 5.295 -9.352 -1.172 10.811 Atomic orbital electron populations 1.70644 1.07826 1.31950 1.45815 1.26985 0.96797 1.05707 0.92720 0.83026 0.74142 0.72166 0.77217 1.20477 1.20104 1.21270 1.22174 0.93248 0.93011 1.57066 0.94377 1.19075 0.89214 0.92961 0.88220 0.99029 1.59197 1.29431 1.43495 1.05209 1.22390 0.97485 0.95577 0.97542 1.22162 0.98532 0.96781 0.96748 1.22513 0.97475 0.94151 1.01378 1.22311 0.96809 0.99788 0.96581 1.22225 0.99322 0.95413 0.98880 0.91258 0.87175 0.86197 0.93581 0.93924 0.93208 0.90730 0.90694 0.89751 0.92412 0.91388 0.93064 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -58.41 13.51 21.45 0.29 -58.12 15 2 C -0.02 -1.15 5.39 84.65 0.46 -0.69 15 3 Si 1.11 52.13 29.90 68.60 2.05 54.18 15 4 H -0.28 -12.47 7.11 99.48 0.71 -11.76 15 5 H -0.28 -12.07 7.11 99.48 0.71 -11.36 15 6 H -0.29 -13.39 7.11 99.48 0.71 -12.68 15 7 C -0.62 -35.15 8.21 25.60 0.21 -34.94 15 8 H 0.04 2.17 7.56 -2.91 -0.02 2.15 15 9 C 0.21 10.83 1.57 44.17 0.07 10.90 15 10 H -0.01 -0.46 7.98 -2.38 -0.02 -0.48 15 11 N -0.84 -40.08 7.73 -171.80 -1.33 -41.41 15 12 C -0.11 -4.44 2.62 -10.07 -0.03 -4.46 15 13 C -0.10 -3.94 5.63 31.67 0.18 -3.77 15 14 C -0.12 -3.33 6.91 31.88 0.22 -3.11 15 15 C -0.12 -3.24 6.83 31.65 0.22 -3.02 15 16 C -0.12 -3.93 6.05 31.30 0.19 -3.74 15 17 H 0.28 17.64 6.39 -92.71 -0.59 17.05 15 18 H 0.32 13.02 7.41 -89.69 -0.66 12.35 15 19 H 0.33 15.01 8.99 -89.70 -0.81 14.20 15 20 H 0.05 1.93 8.14 -2.39 -0.02 1.91 15 21 H 0.04 1.80 7.84 -2.39 -0.02 1.78 15 22 H 0.05 1.90 8.14 -2.39 -0.02 1.88 15 23 H 0.07 1.88 8.14 -2.39 -0.02 1.86 15 24 H 0.07 1.87 8.14 -2.38 -0.02 1.85 15 25 H 0.08 1.86 8.14 -2.39 -0.02 1.84 15 26 H 0.06 1.63 8.14 -2.38 -0.02 1.61 15 27 H 0.07 1.96 8.14 -2.38 -0.02 1.94 15 28 H 0.05 1.75 6.46 -2.38 -0.02 1.73 15 Total: -1.00 -64.68 225.28 2.37 -62.31 By element: Atomic # 1 Polarization: 26.04 SS G_CDS: -0.15 Total: 25.88 kcal Atomic # 6 Polarization: -44.35 SS G_CDS: 1.51 Total: -42.84 kcal Atomic # 7 Polarization: -98.50 SS G_CDS: -1.04 Total: -99.53 kcal Atomic # 14 Polarization: 52.13 SS G_CDS: 2.05 Total: 54.18 kcal Total: -64.68 2.37 -62.31 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000084327452.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.025 kcal (2) G-P(sol) polarization free energy of solvation -64.683 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.658 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.372 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.311 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.286 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.11 seconds