Wall clock time and date at job start Mon Mar 30 2020 01:49:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53002 * 110.91818 * 2 1 4 4 C 1.55159 * 111.00125 * 123.89727 * 2 1 3 5 5 C 1.54325 * 102.94381 * 82.57378 * 4 2 1 6 6 N 1.47026 * 107.26644 * 22.19183 * 5 4 2 7 7 C 1.36935 * 125.64477 * 181.02318 * 6 5 4 8 8 H 1.08005 * 119.99877 * 180.02562 * 7 6 5 9 9 C 1.38811 * 120.00369 * 359.75402 * 7 6 5 10 10 N 1.31617 * 119.99773 * 359.97438 * 9 7 6 11 11 Si 1.86800 * 120.00451 * 180.02562 * 9 7 6 12 12 H 1.48497 * 109.47050 * 59.99408 * 11 9 7 13 13 H 1.48496 * 109.47289 * 179.97438 * 11 9 7 14 14 H 1.48508 * 109.46855 * 299.99389 * 11 9 7 15 15 C 1.47420 * 108.70732 * 1.28881 * 6 5 4 16 16 H 1.09005 * 109.47101 * 296.10250 * 1 2 3 17 17 H 1.08998 * 109.46927 * 56.09713 * 1 2 3 18 18 H 1.08994 * 109.47728 * 176.10133 * 1 2 3 19 19 H 1.08999 * 109.47151 * 183.89818 * 3 2 1 20 20 H 1.09001 * 109.46787 * 303.90028 * 3 2 1 21 21 H 1.09000 * 109.47168 * 63.90226 * 3 2 1 22 22 H 1.08995 * 110.72318 * 324.20877 * 4 2 1 23 23 H 1.09004 * 110.87132 * 201.00740 * 4 2 1 24 24 H 1.08999 * 109.88324 * 262.77933 * 5 4 2 25 25 H 1.08996 * 110.01583 * 141.67989 * 5 4 2 26 26 H 0.97004 * 120.00382 * 180.02562 * 10 9 7 27 27 H 1.08998 * 110.36863 * 94.48168 * 15 6 5 28 28 H 1.08994 * 110.36906 * 216.80715 * 15 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0762 1.4292 0.0000 4 6 2.0860 -0.8078 1.2023 5 6 2.0284 -2.2646 0.6963 6 7 2.0139 -2.2159 -0.7731 7 6 1.9460 -3.3000 -1.6069 8 1 1.9415 -3.1584 -2.6776 9 6 1.8888 -4.5814 -1.0761 10 7 1.9002 -4.7543 0.2286 11 14 1.7970 -6.0604 -2.2135 12 1 2.9969 -6.0875 -3.0879 13 1 1.7463 -7.3046 -1.4045 14 1 0.5752 -5.9647 -3.0522 15 6 2.0908 -0.8070 -1.2003 16 1 -0.3633 0.4522 0.9229 17 1 -0.3633 0.5732 -0.8529 18 1 -0.3634 -1.0252 -0.0699 19 1 3.1636 1.4025 -0.0699 20 1 1.6705 1.9732 -0.8530 21 1 1.7837 1.9300 0.9229 22 1 1.4523 -0.6791 2.0797 23 1 3.1129 -0.5169 1.4240 24 1 1.1217 -2.7479 1.0601 25 1 2.9047 -2.8140 1.0402 26 1 1.8605 -5.6497 0.5996 27 1 3.1253 -0.5267 -1.3987 28 1 1.4765 -0.6450 -2.0859 RHF calculation, no. of doubly occupied orbitals= 32 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000085697217.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:49:32 Heat of formation + Delta-G solvation = 10.194714 kcal Electronic energy + Delta-G solvation = -10190.499458 eV Core-core repulsion = 8434.667376 eV Total energy + Delta-G solvation = -1755.832082 eV No. of doubly occupied orbitals = 32 Molecular weight (most abundant/longest-lived isotopes) = 169.116 amu Computer time = 0.10 seconds Orbital eigenvalues (eV) -38.03209 -33.40645 -30.57224 -28.56169 -26.77479 -25.50296 -23.26774 -20.00990 -18.27868 -16.59904 -14.75111 -14.29400 -13.86430 -13.41912 -13.14484 -12.19007 -11.88212 -11.74341 -11.26424 -11.20175 -10.88575 -10.73907 -10.65295 -10.08391 -9.77450 -9.72608 -9.54916 -9.48732 -8.50879 -6.72103 -5.62826 -2.95446 3.45018 3.48785 3.50390 4.57022 5.26000 5.45559 5.49658 5.62977 5.80535 6.05473 6.11724 6.18144 6.31587 6.37252 6.43317 6.49385 6.65768 6.79389 6.81254 6.96851 7.13313 7.65088 7.74994 7.92127 8.35682 9.31278 9.92105 10.60118 11.48845 Molecular weight = 169.12amu Principal moments of inertia in cm(-1) A = 0.085848 B = 0.014092 C = 0.013360 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 326.078187 B = 1986.465265 C = 2095.368559 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.085 4.085 3 C -0.131 4.131 4 C -0.136 4.136 5 C 0.179 3.821 6 N -0.606 5.606 7 C -0.225 4.225 8 H 0.076 0.924 9 C -0.011 4.011 10 N -0.923 5.923 11 Si 0.911 3.089 12 H -0.286 1.286 13 H -0.291 1.291 14 H -0.286 1.286 15 C 0.145 3.855 16 H 0.043 0.957 17 H 0.044 0.956 18 H 0.065 0.935 19 H 0.051 0.949 20 H 0.048 0.952 21 H 0.048 0.952 22 H 0.056 0.944 23 H 0.054 0.946 24 H 0.043 0.957 25 H 0.039 0.961 26 H 0.251 0.749 27 H 0.016 0.984 28 H 0.035 0.965 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.909 8.311 0.458 8.373 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.086 4.086 3 C -0.188 4.188 4 C -0.174 4.174 5 C 0.054 3.946 6 N -0.332 5.332 7 C -0.354 4.354 8 H 0.094 0.906 9 C -0.207 4.207 10 N -0.571 5.571 11 Si 0.742 3.258 12 H -0.213 1.213 13 H -0.216 1.216 14 H -0.212 1.212 15 C 0.019 3.981 16 H 0.062 0.938 17 H 0.063 0.937 18 H 0.084 0.916 19 H 0.070 0.930 20 H 0.067 0.933 21 H 0.067 0.933 22 H 0.075 0.925 23 H 0.072 0.928 24 H 0.061 0.939 25 H 0.057 0.943 26 H 0.062 0.938 27 H 0.034 0.966 28 H 0.054 0.946 Dipole moment (debyes) X Y Z Total from point charges -0.923 8.059 0.482 8.126 hybrid contribution 0.003 -0.864 -0.541 1.019 sum -0.920 7.195 -0.059 7.254 Atomic orbital electron populations 1.21618 0.94461 1.02354 0.99831 1.21765 0.95449 0.93897 0.97516 1.21707 1.00483 0.95963 1.00683 1.22953 0.99205 0.98773 0.96487 1.21103 1.00687 0.89446 0.83342 1.44471 1.86728 0.99890 1.02087 1.19030 1.43220 0.84180 0.88967 0.90635 1.24797 1.02576 0.97318 0.96000 1.69972 1.57293 1.20646 1.09230 0.86206 0.77858 0.82295 0.79454 1.21262 1.21643 1.21244 1.21651 0.96469 0.85646 0.94379 0.93774 0.93653 0.91628 0.92967 0.93257 0.93288 0.92533 0.92770 0.93855 0.94296 0.93837 0.96635 0.94634 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.20 8.59 37.15 0.32 -1.88 15 2 C -0.09 -1.58 0.96 -152.24 -0.15 -1.72 15 3 C -0.13 -1.94 8.68 37.16 0.32 -1.62 15 4 C -0.14 -2.71 5.91 -24.89 -0.15 -2.86 15 5 C 0.18 4.56 5.06 -3.06 -0.02 4.55 15 6 N -0.61 -16.21 3.38 -169.94 -0.57 -16.78 15 7 C -0.23 -6.53 10.28 -15.06 -0.15 -6.68 15 8 H 0.08 2.10 7.83 -52.48 -0.41 1.69 15 9 C -0.01 -0.32 5.49 -17.43 -0.10 -0.42 15 10 N -0.92 -27.99 10.31 55.49 0.57 -27.42 15 11 Si 0.91 22.68 29.55 -169.99 -5.02 17.65 15 12 H -0.29 -7.01 7.11 56.52 0.40 -6.60 15 13 H -0.29 -7.26 7.11 56.52 0.40 -6.86 15 14 H -0.29 -6.99 7.11 56.52 0.40 -6.59 15 15 C 0.14 3.18 6.17 -2.41 -0.01 3.17 15 16 H 0.04 0.68 8.14 -51.93 -0.42 0.26 15 17 H 0.04 0.72 8.14 -51.93 -0.42 0.29 15 18 H 0.06 1.34 7.91 -51.93 -0.41 0.93 15 19 H 0.05 0.76 8.07 -51.93 -0.42 0.34 15 20 H 0.05 0.67 8.14 -51.93 -0.42 0.24 15 21 H 0.05 0.65 8.14 -51.93 -0.42 0.23 15 22 H 0.06 1.03 8.04 -51.93 -0.42 0.61 15 23 H 0.05 1.02 8.04 -51.93 -0.42 0.60 15 24 H 0.04 1.21 7.40 -51.93 -0.38 0.83 15 25 H 0.04 1.10 7.48 -51.93 -0.39 0.71 15 26 H 0.25 7.39 8.31 -40.82 -0.34 7.05 15 27 H 0.02 0.35 7.99 -51.93 -0.41 -0.07 15 28 H 0.04 0.77 8.06 -51.93 -0.42 0.35 15 LS Contribution 227.40 15.07 3.43 3.43 Total: -1.00 -30.51 227.40 -6.04 -36.55 By element: Atomic # 1 Polarization: -1.47 SS G_CDS: -4.51 Total: -5.98 kcal Atomic # 6 Polarization: -7.52 SS G_CDS: 0.07 Total: -7.45 kcal Atomic # 7 Polarization: -44.20 SS G_CDS: 0.00 Total: -44.20 kcal Atomic # 14 Polarization: 22.68 SS G_CDS: -5.02 Total: 17.65 kcal Total LS contribution 3.43 Total: 3.43 kcal Total: -30.51 -6.04 -36.55 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000085697217.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.745 kcal (2) G-P(sol) polarization free energy of solvation -30.511 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.234 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.040 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.550 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.195 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.11 seconds