Wall clock time and date at job start Mon Mar 30 2020 01:49:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53002 * 110.91818 * 2 1 4 4 C 1.55159 * 111.00125 * 123.89727 * 2 1 3 5 5 C 1.54325 * 102.94381 * 82.57378 * 4 2 1 6 6 N 1.47026 * 107.26644 * 22.19183 * 5 4 2 7 7 C 1.36935 * 125.64477 * 181.02318 * 6 5 4 8 8 H 1.08005 * 119.99877 * 180.02562 * 7 6 5 9 9 C 1.38811 * 120.00369 * 359.75402 * 7 6 5 10 10 N 1.31617 * 119.99773 * 359.97438 * 9 7 6 11 11 Si 1.86800 * 120.00451 * 180.02562 * 9 7 6 12 12 H 1.48497 * 109.47050 * 59.99408 * 11 9 7 13 13 H 1.48496 * 109.47289 * 179.97438 * 11 9 7 14 14 H 1.48508 * 109.46855 * 299.99389 * 11 9 7 15 15 C 1.47420 * 108.70732 * 1.28881 * 6 5 4 16 16 H 1.09005 * 109.47101 * 296.10250 * 1 2 3 17 17 H 1.08998 * 109.46927 * 56.09713 * 1 2 3 18 18 H 1.08994 * 109.47728 * 176.10133 * 1 2 3 19 19 H 1.08999 * 109.47151 * 183.89818 * 3 2 1 20 20 H 1.09001 * 109.46787 * 303.90028 * 3 2 1 21 21 H 1.09000 * 109.47168 * 63.90226 * 3 2 1 22 22 H 1.08995 * 110.72318 * 324.20877 * 4 2 1 23 23 H 1.09004 * 110.87132 * 201.00740 * 4 2 1 24 24 H 1.08999 * 109.88324 * 262.77933 * 5 4 2 25 25 H 1.08996 * 110.01583 * 141.67989 * 5 4 2 26 26 H 0.97004 * 120.00382 * 180.02562 * 10 9 7 27 27 H 1.08998 * 110.36863 * 94.48168 * 15 6 5 28 28 H 1.08994 * 110.36906 * 216.80715 * 15 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0762 1.4292 0.0000 4 6 2.0860 -0.8078 1.2023 5 6 2.0284 -2.2646 0.6963 6 7 2.0139 -2.2159 -0.7731 7 6 1.9460 -3.3000 -1.6069 8 1 1.9415 -3.1584 -2.6776 9 6 1.8888 -4.5814 -1.0761 10 7 1.9002 -4.7543 0.2286 11 14 1.7970 -6.0604 -2.2135 12 1 2.9969 -6.0875 -3.0879 13 1 1.7463 -7.3046 -1.4045 14 1 0.5752 -5.9647 -3.0522 15 6 2.0908 -0.8070 -1.2003 16 1 -0.3633 0.4522 0.9229 17 1 -0.3633 0.5732 -0.8529 18 1 -0.3634 -1.0252 -0.0699 19 1 3.1636 1.4025 -0.0699 20 1 1.6705 1.9732 -0.8530 21 1 1.7837 1.9300 0.9229 22 1 1.4523 -0.6791 2.0797 23 1 3.1129 -0.5169 1.4240 24 1 1.1217 -2.7479 1.0601 25 1 2.9047 -2.8140 1.0402 26 1 1.8605 -5.6497 0.5996 27 1 3.1253 -0.5267 -1.3987 28 1 1.4765 -0.6450 -2.0859 RHF calculation, no. of doubly occupied orbitals= 32 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000085697217.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:49:32 Heat of formation + Delta-G solvation = -8.888605 kcal Electronic energy + Delta-G solvation = -10191.326973 eV Core-core repulsion = 8434.667376 eV Total energy + Delta-G solvation = -1756.659597 eV No. of doubly occupied orbitals = 32 Molecular weight (most abundant/longest-lived isotopes) = 169.116 amu Computer time = 0.13 seconds Orbital eigenvalues (eV) -39.74464 -35.34981 -32.55044 -30.40031 -28.08244 -27.42740 -25.11730 -22.00274 -19.87156 -18.65461 -16.79325 -16.09630 -15.69383 -14.88330 -14.81003 -13.91943 -13.50124 -13.41453 -13.09345 -12.76970 -12.64321 -12.56625 -12.22612 -12.04993 -11.78853 -11.36557 -11.24324 -11.15774 -10.68153 -8.87163 -7.84121 -5.19502 1.43968 1.48211 1.54536 2.50020 3.33139 3.68859 3.85616 4.09693 4.12461 4.59321 4.66926 4.71374 4.88131 4.91881 4.98773 5.05858 5.18782 5.22962 5.31086 5.41141 5.47231 5.65297 5.71908 5.80680 6.21138 7.11205 7.79819 8.45759 9.26247 Molecular weight = 169.12amu Principal moments of inertia in cm(-1) A = 0.085848 B = 0.014092 C = 0.013360 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 326.078187 B = 1986.465265 C = 2095.368559 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.076 4.076 3 C -0.123 4.123 4 C -0.124 4.124 5 C 0.187 3.813 6 N -0.628 5.628 7 C -0.244 4.244 8 H 0.081 0.919 9 C -0.071 4.071 10 N -0.954 5.954 11 Si 0.981 3.019 12 H -0.277 1.277 13 H -0.293 1.293 14 H -0.276 1.276 15 C 0.136 3.864 16 H 0.069 0.931 17 H 0.064 0.936 18 H 0.025 0.975 19 H 0.054 0.946 20 H 0.066 0.934 21 H 0.071 0.929 22 H 0.077 0.923 23 H 0.067 0.933 24 H 0.007 0.993 25 H -0.001 1.001 26 H 0.246 0.754 27 H 0.020 0.980 28 H 0.038 0.962 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.078 9.980 -0.035 10.038 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C -0.077 4.077 3 C -0.180 4.180 4 C -0.163 4.163 5 C 0.062 3.938 6 N -0.354 5.354 7 C -0.373 4.373 8 H 0.098 0.902 9 C -0.263 4.263 10 N -0.603 5.603 11 Si 0.809 3.191 12 H -0.203 1.203 13 H -0.219 1.219 14 H -0.202 1.202 15 C 0.011 3.989 16 H 0.088 0.912 17 H 0.083 0.917 18 H 0.044 0.956 19 H 0.073 0.927 20 H 0.085 0.915 21 H 0.090 0.910 22 H 0.095 0.905 23 H 0.086 0.914 24 H 0.025 0.975 25 H 0.018 0.982 26 H 0.055 0.945 27 H 0.038 0.962 28 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges -1.089 9.768 -0.029 9.829 hybrid contribution 0.059 -1.362 -0.404 1.422 sum -1.030 8.406 -0.433 8.480 Atomic orbital electron populations 1.21584 0.93742 1.00413 1.02114 1.21782 0.96000 0.95574 0.94355 1.21646 1.00582 0.93051 1.02736 1.22856 1.00790 0.94846 0.97768 1.20864 0.97065 0.92707 0.83214 1.44796 1.86551 1.01524 1.02500 1.19463 1.42735 0.85412 0.89727 0.90151 1.25710 1.02769 1.00272 0.97593 1.70213 1.58350 1.20708 1.11011 0.85111 0.78272 0.78213 0.77494 1.20258 1.21930 1.20190 1.21909 0.96940 0.83834 0.96211 0.91180 0.91733 0.95610 0.92694 0.91539 0.90981 0.90487 0.91389 0.97505 0.98243 0.94480 0.96221 0.94404 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -3.96 8.59 71.98 0.62 -3.35 15 2 C -0.08 -2.62 0.96 -50.71 -0.05 -2.67 15 3 C -0.12 -3.09 8.68 71.98 0.62 -2.47 15 4 C -0.12 -4.78 5.91 31.78 0.19 -4.59 15 5 C 0.19 9.79 5.06 86.73 0.44 10.23 15 6 N -0.63 -34.12 3.38 -691.56 -2.34 -36.45 15 7 C -0.24 -14.38 10.28 84.03 0.86 -13.51 15 8 H 0.08 4.50 7.83 -2.91 -0.02 4.48 15 9 C -0.07 -4.21 5.49 84.86 0.47 -3.74 15 10 N -0.95 -59.83 10.31 21.65 0.22 -59.61 15 11 Si 0.98 47.29 29.55 68.60 2.03 49.31 15 12 H -0.28 -12.81 7.11 99.48 0.71 -12.10 15 13 H -0.29 -14.13 7.11 99.48 0.71 -13.43 15 14 H -0.28 -12.76 7.11 99.48 0.71 -12.05 15 15 C 0.14 5.84 6.17 86.93 0.54 6.38 15 16 H 0.07 1.92 8.14 -2.38 -0.02 1.90 15 17 H 0.06 1.84 8.14 -2.39 -0.02 1.82 15 18 H 0.02 1.02 7.91 -2.39 -0.02 1.00 15 19 H 0.05 1.37 8.07 -2.39 -0.02 1.35 15 20 H 0.07 1.48 8.14 -2.39 -0.02 1.46 15 21 H 0.07 1.54 8.14 -2.39 -0.02 1.52 15 22 H 0.08 2.64 8.04 -2.39 -0.02 2.62 15 23 H 0.07 2.42 8.04 -2.38 -0.02 2.40 15 24 H 0.01 0.39 7.40 -2.39 -0.02 0.38 15 25 H 0.00 -0.04 7.48 -2.39 -0.02 -0.06 15 26 H 0.25 14.98 8.31 -92.71 -0.77 14.20 15 27 H 0.02 0.84 7.99 -2.39 -0.02 0.82 15 28 H 0.04 1.59 8.06 -2.39 -0.02 1.57 15 Total: -1.00 -67.28 227.40 4.70 -62.58 By element: Atomic # 1 Polarization: -3.20 SS G_CDS: 1.10 Total: -2.10 kcal Atomic # 6 Polarization: -17.41 SS G_CDS: 3.69 Total: -13.73 kcal Atomic # 7 Polarization: -93.95 SS G_CDS: -2.11 Total: -96.06 kcal Atomic # 14 Polarization: 47.29 SS G_CDS: 2.03 Total: 49.31 kcal Total: -67.28 4.70 -62.58 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000085697217.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.688 kcal (2) G-P(sol) polarization free energy of solvation -67.276 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.588 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.700 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.576 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.889 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.13 seconds