Wall clock time and date at job start Mon Mar 30 2020 02:09:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09002 * 110.77989 * 2 1 4 4 C 1.54330 * 110.72179 * 236.76444 * 2 1 3 5 5 N 1.47020 * 107.26889 * 219.43969 * 4 2 1 6 6 C 1.36936 * 125.64370 * 178.90053 * 5 4 2 7 7 H 1.08004 * 119.99868 * 180.02562 * 6 5 4 8 8 C 1.38816 * 120.00468 * 0.04430 * 6 5 4 9 9 N 1.31617 * 119.99720 * 0.02562 * 8 6 5 10 10 Si 1.86797 * 120.00345 * 179.97438 * 8 6 5 11 11 H 1.48499 * 109.47052 * 89.99947 * 10 8 6 12 12 H 1.48491 * 109.47287 * 210.00390 * 10 8 6 13 13 H 1.48502 * 109.46952 * 330.00365 * 10 8 6 14 14 C 1.47420 * 108.70808 * 358.94428 * 5 4 2 15 15 C 1.54909 * 104.83177 * 24.12282 * 14 5 4 16 16 H 1.09001 * 111.00421 * 81.06686 * 15 14 5 17 17 C 1.53003 * 111.03759 * 204.91055 * 15 14 5 18 18 H 1.08991 * 109.47275 * 296.75953 * 1 2 3 19 19 H 1.09004 * 109.47268 * 56.75965 * 1 2 3 20 20 H 1.09008 * 109.46766 * 176.75826 * 1 2 3 21 21 H 1.08996 * 109.87971 * 338.85805 * 4 2 1 22 22 H 1.09002 * 109.88084 * 100.02482 * 4 2 1 23 23 H 0.96998 * 120.00417 * 179.97438 * 9 8 6 24 24 H 1.09003 * 110.36227 * 265.28776 * 14 5 4 25 25 H 1.08990 * 110.46498 * 143.01271 * 14 5 4 26 26 H 1.09003 * 109.47251 * 172.22181 * 17 15 14 27 27 H 1.09003 * 109.46642 * 292.21456 * 17 15 14 28 28 H 1.08996 * 109.47558 * 52.20911 * 17 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9167 1.0191 0.0000 4 6 2.0760 -0.7911 -1.2073 5 7 3.2446 -1.5506 -0.7391 6 6 4.0035 -2.3978 -1.5016 7 1 4.8456 -2.9118 -1.0621 8 6 3.6908 -2.5958 -2.8395 9 7 2.6651 -1.9688 -3.3753 10 14 4.7265 -3.7510 -3.8797 11 1 4.1657 -5.1239 -3.8023 12 1 4.7150 -3.2905 -5.2914 13 1 6.1221 -3.7571 -3.3723 14 6 3.4633 -1.2498 0.6874 15 6 2.0790 -0.7955 1.2137 16 1 1.4452 -1.6536 1.4374 17 6 2.2269 0.1078 2.4398 18 1 -0.3633 0.4627 0.9175 19 1 -0.3634 0.5633 -0.8595 20 1 -0.3633 -1.0261 -0.0581 21 1 1.3130 -1.4758 -1.5776 22 1 2.3741 -0.1023 -1.9978 23 1 2.4467 -2.1068 -4.3102 24 1 4.1932 -0.4478 0.7984 25 1 3.7970 -2.1414 1.2181 26 1 1.2544 0.5227 2.7049 27 1 2.6134 -0.4750 3.2759 28 1 2.9183 0.9191 2.2121 RHF calculation, no. of doubly occupied orbitals= 32 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000085697465.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:09:31 Heat of formation + Delta-G solvation = -11.404662 kcal Electronic energy + Delta-G solvation = -10109.213276 eV Core-core repulsion = 8352.444575 eV Total energy + Delta-G solvation = -1756.768701 eV No. of doubly occupied orbitals = 32 Molecular weight (most abundant/longest-lived isotopes) = 169.116 amu Computer time = 0.12 seconds Orbital eigenvalues (eV) -39.57443 -35.20537 -32.53218 -31.78905 -27.93425 -26.72971 -24.49523 -21.64829 -20.69128 -18.83221 -16.94240 -16.11322 -15.63171 -14.79255 -14.53085 -14.15019 -13.67960 -13.34045 -13.04703 -12.90206 -12.77196 -12.48128 -12.33602 -11.90075 -11.80140 -11.40693 -11.24439 -11.01229 -10.70997 -8.89663 -7.85245 -5.21478 1.43735 1.46825 1.55557 2.49053 3.31834 3.71500 3.87787 4.07641 4.08534 4.59209 4.65951 4.71263 4.78881 4.87232 4.99609 5.09110 5.17503 5.23737 5.28348 5.42773 5.46836 5.60334 5.74426 5.82633 6.20045 7.09921 7.78188 8.44032 9.25085 Molecular weight = 169.12amu Principal moments of inertia in cm(-1) A = 0.077475 B = 0.014383 C = 0.012524 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 361.320548 B = 1946.295613 C = 2235.106219 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.109 4.109 3 H 0.073 0.927 4 C 0.190 3.810 5 N -0.634 5.634 6 C -0.246 4.246 7 H 0.082 0.918 8 C -0.071 4.071 9 N -0.953 5.953 10 Si 0.983 3.017 11 H -0.284 1.284 12 H -0.293 1.293 13 H -0.268 1.268 14 C 0.129 3.871 15 C -0.093 4.093 16 H 0.069 0.931 17 C -0.127 4.127 18 H 0.080 0.920 19 H 0.051 0.949 20 H 0.042 0.958 21 H 0.011 0.989 22 H -0.003 1.003 23 H 0.246 0.754 24 H 0.022 0.978 25 H 0.038 0.962 26 H 0.072 0.928 27 H 0.065 0.935 28 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.345 3.424 8.866 9.790 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.128 4.128 3 H 0.091 0.909 4 C 0.065 3.935 5 N -0.360 5.360 6 C -0.375 4.375 7 H 0.099 0.901 8 C -0.264 4.264 9 N -0.602 5.602 10 Si 0.811 3.189 11 H -0.211 1.211 12 H -0.219 1.219 13 H -0.193 1.193 14 C 0.004 3.996 15 C -0.112 4.112 16 H 0.087 0.913 17 C -0.184 4.184 18 H 0.099 0.901 19 H 0.070 0.930 20 H 0.061 0.939 21 H 0.029 0.971 22 H 0.015 0.985 23 H 0.056 0.944 24 H 0.040 0.960 25 H 0.057 0.943 26 H 0.091 0.909 27 H 0.084 0.916 28 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -2.317 3.354 8.672 9.582 hybrid contribution 0.545 -0.674 -1.126 1.421 sum -1.772 2.680 7.546 8.201 Atomic orbital electron populations 1.21611 0.93226 1.01241 1.02179 1.22431 0.96872 0.98466 0.95014 0.90883 1.20998 0.87969 0.91879 0.92625 1.44887 1.32731 1.51288 1.07117 1.19522 1.07999 1.17897 0.92121 0.90060 1.25743 1.00015 1.02410 0.98236 1.70222 1.30553 1.47034 1.12399 0.85012 0.78390 0.78048 0.77488 1.21088 1.21922 1.19284 1.21861 0.96237 0.97269 0.84188 1.22335 0.95534 0.98297 0.95047 0.91263 1.21627 1.02464 0.98699 0.95652 0.90141 0.92994 0.93928 0.97103 0.98497 0.94443 0.96016 0.94338 0.90885 0.91617 0.92707 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.96 9.16 71.98 0.66 -3.30 15 2 C -0.11 -4.16 3.02 -9.60 -0.03 -4.19 15 3 H 0.07 2.65 8.04 -2.39 -0.02 2.63 15 4 C 0.19 10.02 4.97 86.73 0.43 10.45 15 5 N -0.63 -34.91 3.39 -692.00 -2.35 -37.26 15 6 C -0.25 -14.60 10.28 84.03 0.86 -13.74 15 7 H 0.08 4.58 7.83 -2.91 -0.02 4.56 15 8 C -0.07 -4.26 5.49 84.86 0.47 -3.79 15 9 N -0.95 -59.93 10.31 21.65 0.22 -59.70 15 10 Si 0.98 47.37 29.55 68.60 2.03 49.39 15 11 H -0.28 -13.36 7.11 99.48 0.71 -12.65 15 12 H -0.29 -14.09 7.11 99.48 0.71 -13.38 15 13 H -0.27 -12.19 7.11 99.48 0.71 -11.48 15 14 C 0.13 5.60 6.70 86.86 0.58 6.18 15 15 C -0.09 -3.24 3.09 -9.40 -0.03 -3.27 15 16 H 0.07 2.45 8.05 -2.39 -0.02 2.43 15 17 C -0.13 -3.20 9.31 71.98 0.67 -2.53 15 18 H 0.08 1.97 8.14 -2.39 -0.02 1.95 15 19 H 0.05 1.61 8.14 -2.39 -0.02 1.59 15 20 H 0.04 1.42 8.06 -2.38 -0.02 1.41 15 21 H 0.01 0.63 7.01 -2.39 -0.02 0.61 15 22 H 0.00 -0.19 7.51 -2.39 -0.02 -0.21 15 23 H 0.25 14.97 8.31 -92.71 -0.77 14.20 15 24 H 0.02 0.93 7.99 -2.39 -0.02 0.91 15 25 H 0.04 1.61 8.14 -2.39 -0.02 1.60 15 26 H 0.07 1.54 8.14 -2.39 -0.02 1.52 15 27 H 0.06 1.46 8.14 -2.39 -0.02 1.44 15 28 H 0.05 1.37 8.07 -2.39 -0.02 1.35 15 Total: -1.00 -67.89 228.16 4.61 -63.27 By element: Atomic # 1 Polarization: -2.62 SS G_CDS: 1.10 Total: -1.52 kcal Atomic # 6 Polarization: -17.80 SS G_CDS: 3.61 Total: -14.19 kcal Atomic # 7 Polarization: -94.84 SS G_CDS: -2.13 Total: -96.96 kcal Atomic # 14 Polarization: 47.37 SS G_CDS: 2.03 Total: 49.39 kcal Total: -67.89 4.61 -63.27 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000085697465.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.869 kcal (2) G-P(sol) polarization free energy of solvation -67.889 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.020 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.615 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.274 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.405 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.12 seconds